Wall clock time and date at job start Tue Mar 31 2020 15:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41314 * 126.15014 * 2 1 4 4 C 1.47673 * 125.95259 * 359.97438 * 3 2 1 5 5 O 1.21582 * 119.99712 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00055 * 179.97438 * 4 3 2 7 7 C 1.39015 * 119.99988 * 175.27280 * 6 4 3 8 8 C 1.38679 * 120.28446 * 34.26341 * 7 6 4 9 9 C 1.38207 * 120.03325 * 179.97438 * 8 7 6 10 10 C 1.38887 * 120.61487 * 0.04134 * 9 8 7 11 11 C 1.36454 * 120.58414 * 359.97438 * 10 9 8 12 12 C 1.40739 * 119.94833 * 359.72083 * 11 10 9 13 13 C 1.41053 * 120.30780 * 180.27583 * 12 11 10 14 14 H 1.08002 * 120.00002 * 148.81557 * 13 12 11 15 15 C 1.39962 * 119.99703 * 328.82419 * 13 12 11 16 16 N 1.30852 * 119.99594 * 167.55553 * 15 13 12 17 17 Si 1.86800 * 120.00250 * 347.55018 * 15 13 12 18 18 H 1.48504 * 109.46857 * 92.50909 * 17 15 13 19 19 H 1.48494 * 109.47306 * 212.50773 * 17 15 13 20 20 H 1.48501 * 109.47246 * 332.51215 * 17 15 13 21 21 N 1.32136 * 108.09078 * 179.97438 * 3 2 1 22 22 N 1.39401 * 108.10985 * 359.94714 * 21 3 2 23 23 C 1.34851 * 126.14622 * 180.02562 * 2 1 3 24 24 O 1.36037 * 128.63246 * 0.21870 * 23 2 1 25 25 C 1.43518 * 114.97086 * 164.28781 * 24 23 2 26 26 C 1.53218 * 109.28502 * 47.21900 * 25 24 23 27 27 C 1.46726 * 128.21298 * 180.17441 * 22 21 3 28 28 H 1.09001 * 109.47136 * 90.02068 * 1 2 3 29 29 H 1.08997 * 109.47259 * 210.02462 * 1 2 3 30 30 H 1.09001 * 109.47168 * 330.02844 * 1 2 3 31 31 H 0.97002 * 120.00133 * 355.28023 * 6 4 3 32 32 H 1.07999 * 119.98566 * 359.97368 * 8 7 6 33 33 H 1.07996 * 119.69309 * 180.02562 * 9 8 7 34 34 H 1.07997 * 119.70417 * 179.97438 * 10 9 8 35 35 H 1.08003 * 120.02574 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99553 * 179.97438 * 16 15 13 37 37 H 1.08995 * 109.50110 * 167.16561 * 25 24 23 38 38 H 1.09004 * 109.50257 * 287.24226 * 25 24 23 39 39 H 1.09004 * 109.50292 * 175.45784 * 26 25 24 40 40 H 1.08997 * 109.50076 * 55.35004 * 26 25 24 41 41 H 1.08996 * 109.76500 * 282.58942 * 27 22 21 42 42 H 1.09000 * 109.75715 * 43.36049 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3406 1.1411 0.0000 4 6 1.8868 2.5463 -0.0005 5 8 0.6979 2.8012 -0.0006 6 7 2.7904 3.5463 0.0000 7 6 2.3662 4.8664 -0.0997 8 6 1.1706 5.2626 0.4806 9 6 0.7542 6.5765 0.3787 10 6 1.5228 7.5112 -0.3028 11 6 2.7033 7.1488 -0.8834 12 6 3.1535 5.8187 -0.7891 13 6 4.3754 5.4371 -1.3815 14 1 4.9674 4.6496 -0.9390 15 6 4.8207 6.0792 -2.5427 16 7 6.0501 5.9056 -2.9557 17 14 3.6601 7.1840 -3.5028 18 1 3.8087 8.5850 -3.0334 19 1 3.9884 7.1091 -4.9490 20 1 2.2604 6.7362 -3.2891 21 7 3.5968 0.7314 0.0006 22 7 3.5981 -0.6626 0.0022 23 6 2.3024 -1.0889 -0.0005 24 8 1.9452 -2.4016 -0.0051 25 6 2.9957 -3.3141 -0.3567 26 6 4.2596 -2.9593 0.4334 27 6 4.7517 -1.5692 0.0068 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 3.7367 3.3449 0.0699 32 1 0.5645 4.5440 1.0123 33 1 -0.1777 6.8791 0.8330 34 1 1.1832 8.5340 -0.3737 35 1 3.2940 7.8832 -1.4108 36 1 6.3587 6.3503 -3.7607 37 1 2.6894 -4.3319 -0.1155 38 1 3.2006 -3.2391 -1.4247 39 1 5.0351 -3.6980 0.2303 40 1 4.0325 -2.9532 1.4995 41 1 5.1828 -1.6223 -0.9929 42 1 5.5001 -1.2096 0.7130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583450188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:52 Heat of formation + Delta-G solvation = 34.286370 kcal Electronic energy + Delta-G solvation = -27387.875128 eV Core-core repulsion = 23527.987172 eV Total energy + Delta-G solvation = -3859.887957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87971 -39.64243 -38.51372 -37.24951 -35.06926 -33.93473 -33.58496 -31.51010 -31.08666 -30.41052 -28.68398 -26.83104 -26.20985 -25.11644 -24.01604 -22.36465 -21.55351 -20.34137 -19.96605 -19.39698 -17.99570 -17.41388 -16.82877 -16.76671 -16.04204 -15.73149 -15.31778 -15.14496 -15.02012 -14.61298 -14.21079 -14.04442 -13.72502 -13.39100 -13.18208 -13.02141 -12.76525 -12.55571 -12.42404 -12.07128 -11.97401 -11.78161 -11.63987 -11.56893 -11.46941 -11.07510 -10.84723 -10.61768 -10.41150 -9.99025 -9.80592 -9.42154 -9.34457 -9.12290 -8.87311 -8.17262 -7.60689 -7.10290 -6.93464 -4.46407 1.46355 2.05855 2.14912 2.60882 2.73008 2.81252 3.12527 3.22910 3.35537 3.72736 3.83562 3.93923 4.00554 4.04940 4.42527 4.46867 4.56884 4.77472 4.85276 4.98939 5.10299 5.21886 5.33061 5.37099 5.50561 5.66105 5.87178 6.06071 6.10123 6.13826 6.19141 6.37951 6.38781 6.62215 6.67400 6.77303 7.00783 7.15490 7.19503 7.33965 7.49255 7.51775 7.73958 7.84666 8.01246 8.27786 8.31049 8.59814 8.74383 8.90018 10.08639 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003605 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.064090 B = 7765.351663 C = 8988.108435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.192 4.192 3 C 0.061 3.939 4 C 0.586 3.414 5 O -0.522 6.522 6 N -0.620 5.620 7 C 0.028 3.972 8 C -0.074 4.074 9 C -0.227 4.227 10 C -0.085 4.085 11 C -0.227 4.227 12 C 0.087 3.913 13 C -0.447 4.447 14 H 0.090 0.910 15 C 0.085 3.915 16 N -0.813 5.813 17 Si 0.913 3.087 18 H -0.270 1.270 19 H -0.294 1.294 20 H -0.242 1.242 21 N -0.239 5.239 22 N -0.396 5.396 23 C 0.252 3.748 24 O -0.285 6.285 25 C 0.049 3.951 26 C -0.174 4.174 27 C 0.129 3.871 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.411 0.589 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.285 0.715 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -17.280 4.240 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.204 4.204 3 C -0.107 4.107 4 C 0.370 3.630 5 O -0.397 6.397 6 N -0.262 5.262 7 C -0.065 4.065 8 C -0.095 4.095 9 C -0.247 4.247 10 C -0.104 4.104 11 C -0.246 4.246 12 C 0.082 3.918 13 C -0.476 4.476 14 H 0.107 0.893 15 C -0.133 4.133 16 N -0.437 5.437 17 Si 0.740 3.260 18 H -0.197 1.197 19 H -0.221 1.221 20 H -0.165 1.165 21 N -0.068 5.068 22 N -0.193 5.193 23 C 0.087 3.913 24 O -0.192 6.192 25 C -0.026 4.026 26 C -0.213 4.213 27 C 0.008 3.992 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.248 0.752 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.332 -17.009 4.100 17.547 hybrid contribution -0.044 -0.072 -0.650 0.656 sum -1.376 -17.080 3.450 17.480 Atomic orbital electron populations 1.20095 0.87741 1.02726 1.02101 1.18851 0.97281 0.87335 1.16889 1.22031 0.90323 0.94983 1.03325 1.16820 0.85895 0.82009 0.78294 1.90722 1.15773 1.82816 1.50361 1.42705 1.10270 1.04429 1.68757 1.17569 0.97666 0.82273 1.09033 1.20827 0.95543 0.95535 0.97556 1.20329 1.01484 0.93601 1.09310 1.20387 0.94773 0.97637 0.97602 1.20624 0.99602 0.95508 1.08908 1.17542 0.92660 0.90594 0.90958 1.19233 1.02219 1.17917 1.08215 0.89256 1.26080 0.95012 0.94747 0.97491 1.69657 1.15753 1.36574 1.21729 0.86307 0.82991 0.79910 0.76779 1.19656 1.22146 1.16507 1.77680 1.19188 0.86742 1.23210 1.49154 1.04844 1.04896 1.60372 1.19131 0.84731 0.85016 1.02415 1.86626 1.35856 1.10922 1.85815 1.23086 0.86683 0.93378 0.99485 1.22634 0.99554 0.96558 1.02526 1.21942 0.86530 0.86520 1.04193 0.92034 0.92485 0.89735 0.75216 0.86375 0.88441 0.88770 0.87870 0.90483 0.86367 0.90968 0.87203 0.89264 0.89107 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 9.83 36.00 0.35 -0.68 16 2 C -0.19 -3.20 6.14 -104.66 -0.64 -3.84 16 3 C 0.06 1.14 7.10 -82.71 -0.59 0.56 16 4 C 0.59 12.31 7.67 -12.41 -0.10 12.22 16 5 O -0.52 -11.67 12.24 5.29 0.06 -11.60 16 6 N -0.62 -13.59 5.02 -10.38 -0.05 -13.64 16 7 C 0.03 0.68 6.34 -83.20 -0.53 0.15 16 8 C -0.07 -1.71 8.69 -39.43 -0.34 -2.06 16 9 C -0.23 -4.96 10.04 -39.35 -0.39 -5.35 16 10 C -0.09 -1.89 9.97 -39.98 -0.40 -2.28 16 11 C -0.23 -5.50 6.95 -39.28 -0.27 -5.77 16 12 C 0.09 2.20 5.15 -106.65 -0.55 1.65 16 13 C -0.45 -11.84 9.13 -37.87 -0.35 -12.19 16 14 H 0.09 2.42 7.08 -52.49 -0.37 2.05 16 15 C 0.08 2.22 5.47 -17.32 -0.09 2.13 16 16 N -0.81 -21.51 13.93 55.55 0.77 -20.73 16 17 Si 0.91 21.17 24.41 -169.99 -4.15 17.02 16 18 H -0.27 -6.02 6.66 56.52 0.38 -5.64 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.24 -5.85 6.69 56.52 0.38 -5.48 16 21 N -0.24 -4.18 12.33 33.43 0.41 -3.77 16 22 N -0.40 -5.54 4.08 -60.93 -0.25 -5.78 16 23 C 0.25 3.65 7.48 -16.72 -0.13 3.53 16 24 O -0.28 -3.32 10.65 -19.86 -0.21 -3.53 16 25 C 0.05 0.33 7.00 37.27 0.26 0.59 16 26 C -0.17 -0.96 6.16 -26.35 -0.16 -1.13 16 27 C 0.13 1.11 7.41 -3.65 -0.03 1.09 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.37 6.52 -51.93 -0.34 1.03 16 31 H 0.41 8.67 7.28 -40.82 -0.30 8.37 16 32 H 0.12 2.65 6.15 -52.49 -0.32 2.33 16 33 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.10 2.47 4.42 -52.48 -0.23 2.24 16 36 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 37 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -31.60 344.61 -7.14 -38.74 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.97 Total: 9.49 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -3.95 Total: -11.38 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.89 Total: -43.93 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.15 Total: -15.13 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.15 Total: 17.02 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.60 -7.14 -38.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583450188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.026 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds