Wall clock time and date at job start Tue Mar 31 2020 15:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41314 * 126.15014 * 2 1 4 4 C 1.47673 * 125.95259 * 359.97438 * 3 2 1 5 5 O 1.21582 * 119.99712 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00055 * 179.97438 * 4 3 2 7 7 C 1.39015 * 119.99988 * 175.27280 * 6 4 3 8 8 C 1.38679 * 120.28446 * 34.26341 * 7 6 4 9 9 C 1.38207 * 120.03325 * 179.97438 * 8 7 6 10 10 C 1.38887 * 120.61487 * 0.04134 * 9 8 7 11 11 C 1.36454 * 120.58414 * 359.97438 * 10 9 8 12 12 C 1.40739 * 119.94833 * 359.72083 * 11 10 9 13 13 C 1.41053 * 120.30780 * 180.27583 * 12 11 10 14 14 H 1.08002 * 120.00002 * 148.81557 * 13 12 11 15 15 C 1.39962 * 119.99703 * 328.82419 * 13 12 11 16 16 N 1.30852 * 119.99594 * 167.55553 * 15 13 12 17 17 Si 1.86800 * 120.00250 * 347.55018 * 15 13 12 18 18 H 1.48504 * 109.46857 * 92.50909 * 17 15 13 19 19 H 1.48494 * 109.47306 * 212.50773 * 17 15 13 20 20 H 1.48501 * 109.47246 * 332.51215 * 17 15 13 21 21 N 1.32136 * 108.09078 * 179.97438 * 3 2 1 22 22 N 1.39401 * 108.10985 * 359.94714 * 21 3 2 23 23 C 1.34851 * 126.14622 * 180.02562 * 2 1 3 24 24 O 1.36037 * 128.63246 * 0.21870 * 23 2 1 25 25 C 1.43518 * 114.97086 * 164.28781 * 24 23 2 26 26 C 1.53218 * 109.28502 * 47.21900 * 25 24 23 27 27 C 1.46726 * 128.21298 * 180.17441 * 22 21 3 28 28 H 1.09001 * 109.47136 * 90.02068 * 1 2 3 29 29 H 1.08997 * 109.47259 * 210.02462 * 1 2 3 30 30 H 1.09001 * 109.47168 * 330.02844 * 1 2 3 31 31 H 0.97002 * 120.00133 * 355.28023 * 6 4 3 32 32 H 1.07999 * 119.98566 * 359.97368 * 8 7 6 33 33 H 1.07996 * 119.69309 * 180.02562 * 9 8 7 34 34 H 1.07997 * 119.70417 * 179.97438 * 10 9 8 35 35 H 1.08003 * 120.02574 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99553 * 179.97438 * 16 15 13 37 37 H 1.08995 * 109.50110 * 167.16561 * 25 24 23 38 38 H 1.09004 * 109.50257 * 287.24226 * 25 24 23 39 39 H 1.09004 * 109.50292 * 175.45784 * 26 25 24 40 40 H 1.08997 * 109.50076 * 55.35004 * 26 25 24 41 41 H 1.08996 * 109.76500 * 282.58942 * 27 22 21 42 42 H 1.09000 * 109.75715 * 43.36049 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3406 1.1411 0.0000 4 6 1.8868 2.5463 -0.0005 5 8 0.6979 2.8012 -0.0006 6 7 2.7904 3.5463 0.0000 7 6 2.3662 4.8664 -0.0997 8 6 1.1706 5.2626 0.4806 9 6 0.7542 6.5765 0.3787 10 6 1.5228 7.5112 -0.3028 11 6 2.7033 7.1488 -0.8834 12 6 3.1535 5.8187 -0.7891 13 6 4.3754 5.4371 -1.3815 14 1 4.9674 4.6496 -0.9390 15 6 4.8207 6.0792 -2.5427 16 7 6.0501 5.9056 -2.9557 17 14 3.6601 7.1840 -3.5028 18 1 3.8087 8.5850 -3.0334 19 1 3.9884 7.1091 -4.9490 20 1 2.2604 6.7362 -3.2891 21 7 3.5968 0.7314 0.0006 22 7 3.5981 -0.6626 0.0022 23 6 2.3024 -1.0889 -0.0005 24 8 1.9452 -2.4016 -0.0051 25 6 2.9957 -3.3141 -0.3567 26 6 4.2596 -2.9593 0.4334 27 6 4.7517 -1.5692 0.0068 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 3.7367 3.3449 0.0699 32 1 0.5645 4.5440 1.0123 33 1 -0.1777 6.8791 0.8330 34 1 1.1832 8.5340 -0.3737 35 1 3.2940 7.8832 -1.4108 36 1 6.3587 6.3503 -3.7607 37 1 2.6894 -4.3319 -0.1155 38 1 3.2006 -3.2391 -1.4247 39 1 5.0351 -3.6980 0.2303 40 1 4.0325 -2.9532 1.4995 41 1 5.1828 -1.6223 -0.9929 42 1 5.5001 -1.2096 0.7130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583450188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:51 Heat of formation + Delta-G solvation = 12.511546 kcal Electronic energy + Delta-G solvation = -27388.819356 eV Core-core repulsion = 23527.987172 eV Total energy + Delta-G solvation = -3860.832184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.00051 -41.24694 -39.66302 -38.91712 -35.94239 -35.64847 -35.49790 -32.56579 -32.30973 -32.22093 -30.34515 -27.79603 -27.42118 -26.80469 -25.28679 -23.85135 -23.00741 -21.93901 -21.01616 -20.76994 -19.37318 -19.19432 -18.48670 -17.77419 -17.27398 -16.99802 -16.56031 -16.52551 -16.07172 -15.83987 -15.76604 -15.50075 -15.27887 -14.98252 -14.74093 -14.25130 -14.09343 -13.95401 -13.83898 -13.48858 -13.43240 -13.11044 -12.87816 -12.72396 -12.60702 -12.31292 -12.21679 -12.08715 -11.81744 -11.79576 -11.69001 -11.23500 -11.10773 -10.64630 -10.26943 -9.48691 -9.34138 -8.92052 -8.87374 -6.44882 0.08257 0.70927 0.83037 1.01651 1.09028 1.26324 1.40007 1.49222 1.83238 2.12302 2.25404 2.39181 2.65854 3.02081 3.45633 3.52142 3.55744 3.90860 3.96986 3.99365 4.27959 4.31272 4.34055 4.44330 4.47534 4.50394 4.61999 4.66636 4.81433 4.88564 4.89437 4.90090 4.95062 5.02617 5.18718 5.22469 5.32211 5.44017 5.59964 5.68575 5.90317 5.99955 6.08545 6.18045 6.21115 6.36882 6.54532 6.76490 6.79720 7.16969 8.19662 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003605 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.064090 B = 7765.351663 C = 8988.108435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.218 4.218 3 C 0.035 3.965 4 C 0.587 3.413 5 O -0.540 6.540 6 N -0.626 5.626 7 C 0.021 3.979 8 C -0.089 4.089 9 C -0.212 4.212 10 C -0.089 4.089 11 C -0.237 4.237 12 C 0.065 3.935 13 C -0.473 4.473 14 H 0.065 0.935 15 C 0.050 3.950 16 N -0.849 5.849 17 Si 0.961 3.039 18 H -0.252 1.252 19 H -0.283 1.283 20 H -0.259 1.259 21 N -0.263 5.263 22 N -0.384 5.384 23 C 0.268 3.732 24 O -0.291 6.291 25 C 0.035 3.965 26 C -0.161 4.161 27 C 0.109 3.891 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.411 0.589 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.292 0.708 37 H 0.155 0.845 38 H 0.079 0.921 39 H 0.153 0.847 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.694 -18.727 4.461 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.231 4.231 3 C -0.131 4.131 4 C 0.373 3.627 5 O -0.416 6.416 6 N -0.267 5.267 7 C -0.073 4.073 8 C -0.109 4.109 9 C -0.232 4.232 10 C -0.107 4.107 11 C -0.257 4.257 12 C 0.061 3.939 13 C -0.503 4.503 14 H 0.083 0.917 15 C -0.164 4.164 16 N -0.476 5.476 17 Si 0.786 3.214 18 H -0.177 1.177 19 H -0.211 1.211 20 H -0.183 1.183 21 N -0.095 5.095 22 N -0.182 5.182 23 C 0.101 3.899 24 O -0.199 6.199 25 C -0.039 4.039 26 C -0.199 4.199 27 C -0.009 4.009 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.248 0.752 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.172 0.828 38 H 0.097 0.903 39 H 0.171 0.829 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.192 -18.474 4.329 19.101 hybrid contribution 0.188 0.148 -0.591 0.638 sum -2.004 -18.327 3.738 18.811 Atomic orbital electron populations 1.20028 0.87048 1.02785 1.02073 1.19063 0.98123 0.87545 1.18332 1.21680 0.91448 0.94059 1.05883 1.17155 0.85511 0.82906 0.77161 1.90681 1.16357 1.83516 1.51055 1.42756 1.10497 1.04219 1.69275 1.17861 0.97922 0.83064 1.08431 1.21039 0.95309 0.96573 0.97961 1.20802 1.02208 0.92715 1.07426 1.20779 0.93784 0.99611 0.96517 1.20824 1.00625 0.94982 1.09264 1.17710 0.92748 0.91712 0.91755 1.19201 1.03155 1.18439 1.09457 0.91731 1.26663 0.96062 0.95807 0.97842 1.69681 1.16804 1.38308 1.22805 0.85575 0.80215 0.79373 0.76276 1.17707 1.21053 1.18271 1.77578 1.18815 0.89182 1.23875 1.49591 1.06350 1.04023 1.58282 1.19047 0.84421 0.86074 1.00360 1.86654 1.38041 1.09668 1.85490 1.23607 0.86254 0.93744 1.00268 1.22672 1.00124 0.95126 1.02000 1.22565 0.85482 0.87291 1.05608 0.92071 0.90351 0.91610 0.75240 0.86087 0.84959 0.84951 0.87673 0.89724 0.82769 0.90251 0.82908 0.89462 0.87658 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.86 9.83 71.23 0.70 -1.16 16 2 C -0.22 -7.38 6.14 -19.89 -0.12 -7.50 16 3 C 0.03 1.36 7.10 42.35 0.30 1.66 16 4 C 0.59 25.81 7.67 86.74 0.67 26.48 16 5 O -0.54 -24.98 12.24 -3.98 -0.05 -25.03 16 6 N -0.63 -28.87 5.02 -305.01 -1.53 -30.40 16 7 C 0.02 1.06 6.34 38.91 0.25 1.30 16 8 C -0.09 -4.05 8.69 22.37 0.19 -3.86 16 9 C -0.21 -8.74 10.04 22.42 0.23 -8.52 16 10 C -0.09 -3.69 9.97 22.01 0.22 -3.47 16 11 C -0.24 -11.35 6.95 22.46 0.16 -11.19 16 12 C 0.06 3.36 5.15 -21.18 -0.11 3.25 16 13 C -0.47 -26.22 9.13 23.38 0.21 -26.01 16 14 H 0.06 3.76 7.08 -2.91 -0.02 3.74 16 15 C 0.05 2.71 5.47 85.26 0.47 3.18 16 16 N -0.85 -46.41 13.93 21.83 0.30 -46.10 16 17 Si 0.96 43.75 24.41 68.60 1.67 45.42 16 18 H -0.25 -10.61 6.66 99.48 0.66 -9.95 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.26 -12.36 6.69 99.48 0.67 -11.69 16 21 N -0.26 -9.50 12.33 -48.16 -0.59 -10.09 16 22 N -0.38 -10.49 4.08 -457.17 -1.87 -12.35 16 23 C 0.27 7.52 7.48 83.20 0.62 8.14 16 24 O -0.29 -6.10 10.65 -93.98 -1.00 -7.10 16 25 C 0.04 0.34 7.00 72.06 0.50 0.85 16 26 C -0.16 -1.17 6.16 30.84 0.19 -0.98 16 27 C 0.11 1.65 7.41 86.51 0.64 2.30 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 2.20 6.52 -2.39 -0.02 2.19 16 31 H 0.41 18.65 7.28 -92.71 -0.67 17.97 16 32 H 0.12 5.44 6.15 -2.91 -0.02 5.43 16 33 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 34 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.11 4.93 4.42 -2.91 -0.01 4.91 16 36 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 37 H 0.15 0.45 8.14 -2.39 -0.02 0.44 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -71.58 344.61 2.37 -69.20 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.32 Total: 31.99 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 5.11 Total: -15.54 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -3.69 Total: -98.95 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -1.05 Total: -32.13 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.67 Total: 45.42 kcal Total: -71.58 2.37 -69.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583450188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.713 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds