Wall clock time and date at job start Tue Mar 31 2020 14:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38767 * 120.00972 * 2 1 4 4 C 1.38643 * 118.02063 * 179.97438 * 3 2 1 5 5 C 1.39285 * 117.92026 * 0.02562 * 4 3 2 6 6 O 1.35677 * 120.14300 * 180.02562 * 5 4 3 7 7 C 1.35951 * 118.00215 * 175.06022 * 6 5 4 8 8 C 1.38750 * 119.99021 * 245.72599 * 7 6 5 9 9 C 1.38069 * 120.01479 * 179.97438 * 8 7 6 10 10 C 1.38856 * 119.99131 * 0.02562 * 9 8 7 11 11 N 1.40085 * 120.01461 * 179.97438 * 10 9 8 12 12 C 1.34780 * 120.00262 * 214.65796 * 11 10 9 13 13 O 1.21299 * 119.99627 * 5.56391 * 12 11 10 14 14 C 1.50692 * 120.00440 * 185.56189 * 12 11 10 15 15 C 1.53003 * 109.47294 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47060 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00066 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00468 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46787 * 60.00157 * 20 18 16 22 22 H 1.48493 * 109.47441 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46957 * 300.00482 * 20 18 16 24 24 C 1.38854 * 119.96800 * 0.02562 * 10 9 8 25 25 C 1.38079 * 119.99090 * 359.97438 * 24 10 9 26 26 N 1.32366 * 119.71793 * 0.27622 * 5 4 3 27 27 N 1.28343 * 122.09752 * 359.42373 * 26 5 4 28 28 H 1.09003 * 109.46794 * 90.00001 * 1 2 3 29 29 H 1.08998 * 109.47036 * 209.99400 * 1 2 3 30 30 H 1.08998 * 109.47040 * 330.00192 * 1 2 3 31 31 H 1.07992 * 120.99116 * 359.97438 * 3 2 1 32 32 H 1.08001 * 121.03900 * 180.02562 * 4 3 2 33 33 H 1.07997 * 119.98763 * 359.70387 * 8 7 6 34 34 H 1.08005 * 120.00607 * 180.02562 * 9 8 7 35 35 H 0.96995 * 120.00100 * 34.66896 * 11 10 9 36 36 H 1.09009 * 109.46909 * 300.00132 * 14 12 11 37 37 H 1.08993 * 109.47334 * 60.00267 * 14 12 11 38 38 H 1.08999 * 109.46686 * 299.99413 * 15 14 12 39 39 H 1.08993 * 109.47230 * 59.99570 * 15 14 12 40 40 H 0.97001 * 119.99998 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.00495 * 179.97438 * 24 10 9 42 42 H 1.07997 * 119.99333 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2016 0.0000 4 6 3.5866 1.1535 0.0005 5 6 4.1957 -0.0991 0.0005 6 8 5.5488 -0.1987 0.0016 7 6 6.0975 -1.4383 0.1048 8 6 6.8354 -1.7786 1.2295 9 6 7.3924 -3.0376 1.3351 10 6 7.2144 -3.9631 0.3154 11 7 7.7798 -5.2404 0.4219 12 6 8.2379 -5.8685 -0.6791 13 8 8.2538 -5.2898 -1.7450 14 6 8.7305 -7.2896 -0.5859 15 6 9.1918 -7.7612 -1.9664 16 6 9.6849 -9.1821 -1.8730 17 1 9.6712 -9.6972 -0.9238 18 6 10.1537 -9.8246 -2.9992 19 7 10.1709 -9.1972 -4.1550 20 14 10.7657 -11.5857 -2.8834 21 1 9.6666 -12.4610 -2.4024 22 1 11.2121 -12.0438 -4.2235 23 1 11.9041 -11.6526 -1.9322 24 6 6.4767 -3.6216 -0.8103 25 6 5.9202 -2.3623 -0.9149 26 7 3.4488 -1.1919 -0.0056 27 7 2.1664 -1.1415 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6775 2.1462 -0.0004 32 1 4.1753 2.0590 0.0010 33 1 6.9778 -1.0571 2.0203 34 1 7.9665 -3.3025 2.2108 35 1 7.8414 -5.6728 1.2879 36 1 9.5659 -7.3395 0.1126 37 1 7.9233 -7.9315 -0.2333 38 1 8.3566 -7.7113 -2.6651 39 1 9.9990 -7.1192 -2.3186 40 1 10.5010 -9.6490 -4.9473 41 1 6.3383 -4.3409 -1.6040 42 1 5.3467 -2.0965 -1.7906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589703588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:32 Heat of formation + Delta-G solvation = 15.352111 kcal Electronic energy + Delta-G solvation = -25598.612412 eV Core-core repulsion = 21737.903404 eV Total energy + Delta-G solvation = -3860.709008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76565 -40.44199 -39.55124 -37.62062 -34.37682 -34.11623 -33.52140 -32.99258 -31.18667 -31.03205 -29.07248 -28.19809 -25.92123 -25.04476 -23.53420 -23.17483 -22.62477 -21.35628 -19.75896 -19.40828 -18.07409 -17.61728 -17.03208 -16.45767 -16.11434 -15.93855 -15.66552 -15.26058 -14.84171 -14.69576 -14.50675 -14.29063 -13.81017 -13.63999 -13.53895 -13.39538 -13.07401 -12.86950 -12.72312 -12.50264 -12.20174 -12.13923 -11.68404 -11.27204 -11.16983 -10.93175 -10.68058 -10.64532 -10.22297 -10.00948 -9.91989 -9.73881 -9.37854 -9.29522 -9.12418 -8.96751 -8.34565 -7.97381 -5.98138 -4.03046 0.35708 0.55872 1.00388 1.32502 2.55602 3.04154 3.14750 3.29390 3.33687 3.38771 3.40686 3.68298 3.80215 3.95368 4.15311 4.40102 4.45793 4.59208 4.78702 4.83055 4.93066 5.07659 5.11906 5.22282 5.25513 5.33757 5.36821 5.44471 5.56398 5.60828 5.74218 5.89753 5.94582 6.12085 6.13492 6.30630 6.35217 6.45351 6.80822 6.82970 7.19997 7.63454 7.70827 7.80581 8.03111 8.33401 8.34230 8.55548 9.04610 9.60714 11.12682 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024614 B = 0.001937 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.305170 B =14452.569638 C =14977.110987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.034 3.966 3 C -0.086 4.086 4 C -0.128 4.128 5 C 0.252 3.748 6 O -0.236 6.236 7 C 0.050 3.950 8 C -0.093 4.093 9 C -0.142 4.142 10 C 0.169 3.831 11 N -0.687 5.687 12 C 0.509 3.491 13 O -0.511 6.511 14 C -0.129 4.129 15 C 0.036 3.964 16 C -0.529 4.529 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.108 4.108 25 C -0.084 4.084 26 N -0.278 5.278 27 N -0.205 5.205 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.410 0.590 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.143 0.857 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.776 23.388 13.824 31.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.115 4.115 4 C -0.158 4.158 5 C 0.068 3.932 6 O -0.138 6.138 7 C 0.008 3.992 8 C -0.112 4.112 9 C -0.162 4.162 10 C 0.074 3.926 11 N -0.333 5.333 12 C 0.299 3.701 13 O -0.384 6.384 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.568 4.568 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.128 4.128 25 C -0.103 4.103 26 N -0.133 5.133 27 N -0.049 5.049 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.161 0.839 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.459 22.237 12.789 30.479 hybrid contribution 0.541 0.364 0.391 0.760 sum -15.919 22.601 13.180 30.625 Atomic orbital electron populations 1.20619 0.87141 1.04027 1.03646 1.22869 0.99338 0.90332 0.98721 1.22188 0.93196 1.00161 0.95940 1.21562 0.95028 0.97224 1.01983 1.21745 0.85794 0.92251 0.93372 1.84649 1.14618 1.28696 1.85881 1.18477 1.00643 0.84355 0.95747 1.20701 0.98950 0.96022 0.95554 1.20697 1.03148 0.92133 1.00271 1.17928 0.93338 0.85891 0.95472 1.44043 1.61168 1.15862 1.12259 1.21884 0.75624 0.89856 0.82720 1.90703 1.52441 1.67014 1.28212 1.21921 1.01328 0.88652 1.04972 1.18920 0.97300 0.95534 0.88365 1.21156 1.42724 0.98123 0.94748 0.92572 1.25028 0.95824 0.98097 0.95421 1.69987 1.46313 1.37105 0.99338 0.86631 0.79191 0.84844 0.77140 1.20224 1.21276 1.20236 1.21073 0.96117 0.96923 0.98677 1.21102 0.98584 0.92816 0.97817 1.73236 1.00141 1.25203 1.14694 1.72834 0.99863 1.24748 1.07475 0.89919 0.89923 0.90330 0.82520 0.82415 0.85087 0.84828 0.75402 0.89816 0.89649 0.95699 0.95704 0.92841 0.83948 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.45 10.19 36.01 0.37 -0.08 16 2 C 0.03 0.28 6.87 -82.40 -0.57 -0.29 16 3 C -0.09 -0.53 9.87 -39.24 -0.39 -0.91 16 4 C -0.13 -0.99 10.16 -39.04 -0.40 -1.39 16 5 C 0.25 2.91 7.42 -16.93 -0.13 2.79 16 6 O -0.24 -2.93 10.00 -3.09 -0.03 -2.96 16 7 C 0.05 0.68 5.51 -39.20 -0.22 0.46 16 8 C -0.09 -1.10 9.98 -39.45 -0.39 -1.49 16 9 C -0.14 -1.68 9.96 -39.41 -0.39 -2.08 16 10 C 0.17 2.47 6.26 -83.63 -0.52 1.95 16 11 N -0.69 -9.81 5.34 -9.83 -0.05 -9.86 16 12 C 0.51 9.56 7.55 -10.99 -0.08 9.48 16 13 O -0.51 -11.69 13.77 5.54 0.08 -11.62 16 14 C -0.13 -2.52 5.64 -27.89 -0.16 -2.68 16 15 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 16 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 17 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 C -0.11 -1.73 8.65 -39.41 -0.34 -2.07 16 25 C -0.08 -1.23 8.86 -39.45 -0.35 -1.58 16 26 N -0.28 -3.74 9.79 30.51 0.30 -3.44 16 27 N -0.20 -2.51 11.42 33.61 0.38 -2.12 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 31 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 32 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.41 4.29 8.82 -40.82 -0.36 3.93 16 36 H 0.08 1.47 8.14 -51.92 -0.42 1.04 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.14 2.55 6.52 -52.48 -0.34 2.21 16 42 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -36.32 368.75 -7.46 -43.78 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.31 Total: 1.29 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -4.09 Total: -10.63 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 1.37 Total: -41.99 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.05 Total: -14.58 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.32 -7.46 -43.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.131 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds