Wall clock time and date at job start Tue Mar 31 2020 14:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38767 * 120.00972 * 2 1 4 4 C 1.38643 * 118.02063 * 179.97438 * 3 2 1 5 5 C 1.39285 * 117.92026 * 0.02562 * 4 3 2 6 6 O 1.35677 * 120.14300 * 180.02562 * 5 4 3 7 7 C 1.35951 * 118.00215 * 175.06022 * 6 5 4 8 8 C 1.38750 * 119.99021 * 245.72599 * 7 6 5 9 9 C 1.38069 * 120.01479 * 179.97438 * 8 7 6 10 10 C 1.38856 * 119.99131 * 0.02562 * 9 8 7 11 11 N 1.40085 * 120.01461 * 179.97438 * 10 9 8 12 12 C 1.34780 * 120.00262 * 214.65796 * 11 10 9 13 13 O 1.21299 * 119.99627 * 5.56391 * 12 11 10 14 14 C 1.50692 * 120.00440 * 185.56189 * 12 11 10 15 15 C 1.53003 * 109.47294 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47060 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00066 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00468 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46787 * 60.00157 * 20 18 16 22 22 H 1.48493 * 109.47441 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46957 * 300.00482 * 20 18 16 24 24 C 1.38854 * 119.96800 * 0.02562 * 10 9 8 25 25 C 1.38079 * 119.99090 * 359.97438 * 24 10 9 26 26 N 1.32366 * 119.71793 * 0.27622 * 5 4 3 27 27 N 1.28343 * 122.09752 * 359.42373 * 26 5 4 28 28 H 1.09003 * 109.46794 * 90.00001 * 1 2 3 29 29 H 1.08998 * 109.47036 * 209.99400 * 1 2 3 30 30 H 1.08998 * 109.47040 * 330.00192 * 1 2 3 31 31 H 1.07992 * 120.99116 * 359.97438 * 3 2 1 32 32 H 1.08001 * 121.03900 * 180.02562 * 4 3 2 33 33 H 1.07997 * 119.98763 * 359.70387 * 8 7 6 34 34 H 1.08005 * 120.00607 * 180.02562 * 9 8 7 35 35 H 0.96995 * 120.00100 * 34.66896 * 11 10 9 36 36 H 1.09009 * 109.46909 * 300.00132 * 14 12 11 37 37 H 1.08993 * 109.47334 * 60.00267 * 14 12 11 38 38 H 1.08999 * 109.46686 * 299.99413 * 15 14 12 39 39 H 1.08993 * 109.47230 * 59.99570 * 15 14 12 40 40 H 0.97001 * 119.99998 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.00495 * 179.97438 * 24 10 9 42 42 H 1.07997 * 119.99333 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2016 0.0000 4 6 3.5866 1.1535 0.0005 5 6 4.1957 -0.0991 0.0005 6 8 5.5488 -0.1987 0.0016 7 6 6.0975 -1.4383 0.1048 8 6 6.8354 -1.7786 1.2295 9 6 7.3924 -3.0376 1.3351 10 6 7.2144 -3.9631 0.3154 11 7 7.7798 -5.2404 0.4219 12 6 8.2379 -5.8685 -0.6791 13 8 8.2538 -5.2898 -1.7450 14 6 8.7305 -7.2896 -0.5859 15 6 9.1918 -7.7612 -1.9664 16 6 9.6849 -9.1821 -1.8730 17 1 9.6712 -9.6972 -0.9238 18 6 10.1537 -9.8246 -2.9992 19 7 10.1709 -9.1972 -4.1550 20 14 10.7657 -11.5857 -2.8834 21 1 9.6666 -12.4610 -2.4024 22 1 11.2121 -12.0438 -4.2235 23 1 11.9041 -11.6526 -1.9322 24 6 6.4767 -3.6216 -0.8103 25 6 5.9202 -2.3623 -0.9149 26 7 3.4488 -1.1919 -0.0056 27 7 2.1664 -1.1415 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6775 2.1462 -0.0004 32 1 4.1753 2.0590 0.0010 33 1 6.9778 -1.0571 2.0203 34 1 7.9665 -3.3025 2.2108 35 1 7.8414 -5.6728 1.2879 36 1 9.5659 -7.3395 0.1126 37 1 7.9233 -7.9315 -0.2333 38 1 8.3566 -7.7113 -2.6651 39 1 9.9990 -7.1192 -2.3186 40 1 10.5010 -9.6490 -4.9473 41 1 6.3383 -4.3409 -1.6040 42 1 5.3467 -2.0965 -1.7906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589703588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:31 Heat of formation + Delta-G solvation = -10.992474 kcal Electronic energy + Delta-G solvation = -25599.754799 eV Core-core repulsion = 21737.903404 eV Total energy + Delta-G solvation = -3861.851395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.54473 -41.60331 -40.64344 -38.78435 -35.69748 -35.54369 -34.74788 -33.71496 -33.04310 -32.14959 -30.22528 -28.85903 -27.70766 -25.96342 -24.47298 -24.29811 -23.74533 -22.82499 -21.25105 -20.31909 -19.01468 -18.75742 -18.67031 -17.76028 -17.20824 -16.95512 -16.62486 -16.48521 -16.41846 -15.95467 -15.52353 -15.25812 -14.96817 -14.65801 -14.64226 -14.32001 -14.15621 -14.11197 -13.86380 -13.64378 -13.29906 -13.23303 -13.14183 -12.78273 -12.52365 -12.41414 -12.24042 -11.92667 -11.66594 -11.43940 -11.33751 -11.23713 -10.84598 -10.63191 -10.56253 -10.17682 -10.06562 -9.11062 -8.18551 -6.32734 -0.25361 -0.19196 0.01338 0.26561 1.42094 1.46594 1.48883 1.54274 1.81147 2.02933 2.43038 2.43488 2.73160 3.00919 3.14601 3.32311 3.64153 3.70208 3.81252 3.89644 3.95966 4.06010 4.19577 4.31654 4.38378 4.48894 4.52962 4.54261 4.61895 4.76937 4.80280 4.90940 5.01020 5.04125 5.10315 5.21479 5.26442 5.30934 5.35743 5.48906 5.60854 5.71157 5.84119 6.15759 6.22140 6.43063 6.85358 7.17034 7.37592 7.62341 8.93854 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024614 B = 0.001937 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.305170 B =14452.569638 C =14977.110987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.034 3.966 3 C -0.070 4.070 4 C -0.124 4.124 5 C 0.226 3.774 6 O -0.241 6.241 7 C 0.052 3.948 8 C -0.090 4.090 9 C -0.121 4.121 10 C 0.146 3.854 11 N -0.662 5.662 12 C 0.512 3.488 13 O -0.564 6.564 14 C -0.116 4.116 15 C 0.040 3.960 16 C -0.543 4.543 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.289 1.289 23 H -0.261 1.261 24 C -0.130 4.130 25 C -0.099 4.099 26 N -0.321 5.321 27 N -0.255 5.255 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.208 0.792 32 H 0.190 0.810 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.432 0.568 36 H 0.114 0.886 37 H 0.111 0.889 38 H -0.018 1.018 39 H -0.016 1.016 40 H 0.262 0.738 41 H 0.109 0.891 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.483 24.891 17.342 35.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.098 4.098 4 C -0.152 4.152 5 C 0.042 3.958 6 O -0.144 6.144 7 C 0.010 3.990 8 C -0.108 4.108 9 C -0.141 4.141 10 C 0.051 3.949 11 N -0.309 5.309 12 C 0.302 3.698 13 O -0.441 6.441 14 C -0.156 4.156 15 C 0.003 3.997 16 C -0.581 4.581 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.215 1.215 23 H -0.186 1.186 24 C -0.151 4.151 25 C -0.118 4.118 26 N -0.174 5.174 27 N -0.098 5.098 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.225 0.775 32 H 0.207 0.793 33 H 0.184 0.816 34 H 0.192 0.808 35 H 0.272 0.728 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.000 1.000 39 H 0.002 0.998 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.198 23.731 16.387 33.577 hybrid contribution 0.573 0.109 -0.702 0.913 sum -16.625 23.839 15.685 33.026 Atomic orbital electron populations 1.20778 0.84670 1.05274 1.04603 1.23563 1.01009 0.90266 0.96539 1.22756 0.92498 1.01264 0.93237 1.22023 0.96023 0.96657 1.00525 1.22089 0.85174 0.93605 0.94981 1.84609 1.15555 1.27730 1.86515 1.18659 1.00318 0.84425 0.95624 1.21122 0.97558 0.96631 0.95530 1.21072 1.01820 0.91141 1.00104 1.18066 0.94230 0.86482 0.96111 1.43583 1.59691 1.15760 1.11913 1.21672 0.75451 0.89648 0.82998 1.90699 1.54925 1.68030 1.30493 1.21676 1.03215 0.89489 1.01180 1.18710 0.94438 0.95057 0.91534 1.21684 1.42014 0.98733 0.95675 0.90330 1.26159 0.96031 1.03465 0.94929 1.70179 1.47742 1.39490 1.00391 0.85358 0.79162 0.78386 0.77243 1.18726 1.21494 1.18562 1.20914 0.98105 0.97056 0.98984 1.21030 0.99174 0.93072 0.98510 1.73079 1.01073 1.26859 1.16378 1.72737 0.99637 1.27301 1.10086 0.88936 0.90891 0.86873 0.77479 0.79296 0.81646 0.80808 0.72819 0.86793 0.87131 0.99977 0.99758 0.92896 0.87262 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.19 71.24 0.73 0.05 16 2 C 0.03 0.51 6.87 42.69 0.29 0.80 16 3 C -0.07 -0.62 9.87 22.49 0.22 -0.39 16 4 C -0.12 -1.62 10.16 22.62 0.23 -1.39 16 5 C 0.23 5.20 7.42 84.86 0.63 5.83 16 6 O -0.24 -5.96 10.00 -33.96 -0.34 -6.30 16 7 C 0.05 1.43 5.51 22.51 0.12 1.55 16 8 C -0.09 -1.95 9.98 22.35 0.22 -1.72 16 9 C -0.12 -2.61 9.96 22.38 0.22 -2.39 16 10 C 0.15 4.28 6.26 38.12 0.24 4.52 16 11 N -0.66 -18.55 5.34 -303.40 -1.62 -20.18 16 12 C 0.51 19.85 7.55 87.65 0.66 20.52 16 13 O -0.56 -27.88 13.77 -3.09 -0.04 -27.93 16 14 C -0.12 -4.54 5.64 29.85 0.17 -4.37 16 15 C 0.04 2.24 4.26 29.85 0.13 2.36 16 16 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 17 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 18 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 19 N -0.94 -59.99 13.29 21.45 0.28 -59.70 16 20 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 C -0.13 -4.54 8.65 22.38 0.19 -4.35 16 25 C -0.10 -3.15 8.86 22.35 0.20 -2.95 16 26 N -0.32 -9.01 9.79 -170.20 -1.67 -10.68 16 27 N -0.25 -6.40 11.42 -47.58 -0.54 -6.95 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 0.03 8.09 -2.39 -0.02 0.01 16 31 H 0.21 -0.33 8.06 -2.91 -0.02 -0.36 16 32 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.43 8.01 8.82 -92.71 -0.82 7.20 16 36 H 0.11 3.78 8.14 -2.38 -0.02 3.76 16 37 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 38 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 39 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 40 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 41 H 0.11 4.47 6.52 -2.91 -0.02 4.45 16 42 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -88.25 368.75 3.29 -84.96 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.24 Total: 12.83 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.95 Total: -12.53 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -3.55 Total: -97.50 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.38 Total: -34.22 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -88.25 3.29 -84.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.968 kcal (2) G-P(sol) polarization free energy of solvation -88.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds