Wall clock time and date at job start Tue Mar 31 2020 16:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99551 * 2 1 4 4 C 1.53008 * 109.46657 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47169 * 64.99852 * 4 3 2 6 6 C 1.46499 * 119.99752 * 278.04315 * 5 4 3 7 7 C 1.50699 * 109.47422 * 270.00164 * 6 5 4 8 8 H 1.08000 * 119.99931 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99961 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99912 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99827 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46954 * 90.00208 * 11 9 7 13 13 H 1.48501 * 109.46938 * 210.00306 * 11 9 7 14 14 H 1.48501 * 109.47066 * 329.99995 * 11 9 7 15 15 C 1.34771 * 119.99989 * 98.05288 * 5 4 3 16 16 O 1.21551 * 119.99967 * 186.16399 * 15 5 4 17 17 C 1.47852 * 120.00222 * 6.16055 * 15 5 4 18 18 C 1.39570 * 120.14579 * 150.64867 * 17 15 5 19 19 C 1.37959 * 119.85124 * 180.02562 * 18 17 15 20 20 C 1.38361 * 120.14705 * 0.02562 * 19 18 17 21 21 C 1.50695 * 119.85234 * 179.97438 * 20 19 18 22 22 C 1.52992 * 109.47455 * 89.99944 * 21 20 19 23 23 F 1.39908 * 109.47181 * 329.99725 * 21 20 19 24 24 F 1.39898 * 109.47064 * 209.99961 * 21 20 19 25 25 C 1.38351 * 120.28931 * 0.23151 * 20 19 18 26 26 C 1.37955 * 120.14863 * 359.48888 * 25 20 19 27 27 H 1.08997 * 109.47397 * 300.00284 * 1 2 3 28 28 H 1.09000 * 109.47572 * 59.99966 * 1 2 3 29 29 H 1.08999 * 109.46874 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47234 * 59.99917 * 3 2 1 31 31 H 1.09000 * 109.47228 * 299.99717 * 3 2 1 32 32 H 1.08997 * 109.46790 * 304.99761 * 4 3 2 33 33 H 1.08998 * 109.46897 * 185.00095 * 4 3 2 34 34 H 1.08997 * 109.47382 * 30.00814 * 6 5 4 35 35 H 1.09000 * 109.46612 * 150.00503 * 6 5 4 36 36 H 0.97001 * 119.99879 * 179.97438 * 10 9 7 37 37 H 1.08004 * 120.07413 * 359.97438 * 18 17 15 38 38 H 1.08001 * 119.92372 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47114 * 59.99586 * 22 21 20 40 40 H 1.09002 * 109.47242 * 299.99703 * 22 21 20 41 41 H 1.08997 * 109.47294 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.92905 * 179.74655 * 25 20 19 43 43 H 1.08006 * 120.07910 * 180.25019 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 3.9372 -0.8925 -1.4015 7 6 5.2478 -1.4790 -0.9440 8 1 6.0310 -0.8313 -0.5785 9 6 5.4468 -2.8425 -0.9910 10 7 4.4929 -3.6312 -1.4356 11 14 7.0711 -3.5695 -0.4233 12 1 6.9941 -3.8810 1.0266 13 1 7.3486 -4.8149 -1.1831 14 1 8.1620 -2.5906 -0.6621 15 6 4.4161 1.3341 -2.2676 16 8 4.6751 0.8314 -3.3435 17 6 4.5843 2.7900 -2.0722 18 6 5.5501 3.4877 -2.7991 19 6 5.7022 4.8461 -2.6117 20 6 4.9003 5.5165 -1.7051 21 6 5.0725 7.0002 -1.5052 22 6 4.1649 7.7547 -2.4786 23 9 6.4057 7.3512 -1.7433 24 9 4.7292 7.3366 -0.1914 25 6 3.9447 4.8298 -0.9775 26 6 3.7784 3.4724 -1.1596 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.1266 -1.2983 -0.7963 35 1 3.7713 -1.1464 -2.4484 36 1 4.6330 -4.5905 -1.4690 37 1 6.1775 2.9654 -3.5062 38 1 6.4488 5.3872 -3.1739 39 1 3.1262 7.4812 -2.2931 40 1 4.4323 7.4927 -3.5022 41 1 4.2891 8.8279 -2.3336 42 1 3.3247 5.3582 -0.2684 43 1 3.0293 2.9382 -0.5939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590033246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:55 Heat of formation + Delta-G solvation = -121.688217 kcal Electronic energy + Delta-G solvation = -28354.648739 eV Core-core repulsion = 24037.308030 eV Total energy + Delta-G solvation = -4317.340709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.25185 -47.26064 -40.33445 -38.25958 -37.52704 -35.12059 -33.39745 -32.56880 -31.24335 -30.10694 -29.58811 -27.21029 -26.10467 -24.83473 -23.10705 -22.77699 -22.57455 -21.37776 -19.23225 -17.93930 -17.69540 -17.06341 -16.58254 -16.48122 -16.37367 -15.65440 -15.45833 -14.92151 -14.66532 -14.62798 -14.44814 -14.11793 -13.88964 -13.71243 -13.68775 -13.44167 -13.36255 -12.92297 -12.86198 -12.63403 -12.40065 -12.19735 -11.88912 -11.80073 -11.75488 -11.28236 -11.17854 -10.99843 -10.89715 -10.71672 -10.40385 -10.12921 -9.60971 -9.45808 -9.17167 -9.08462 -8.89726 -8.35987 -7.68226 -5.98092 -4.02404 0.72145 1.19804 3.07362 3.33581 3.37916 3.39797 3.43810 3.68833 3.82257 3.94056 3.95463 4.14599 4.39484 4.48732 4.69151 4.77534 4.83999 5.08679 5.12166 5.17797 5.23219 5.32758 5.36594 5.39859 5.44663 5.46566 5.49168 5.53808 5.55191 5.61522 5.83447 5.86151 6.05814 6.17241 6.21121 6.30815 6.66492 7.22378 7.36701 7.51130 7.62043 7.99397 8.30165 8.38235 8.87133 9.05168 9.61320 11.09944 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.003506 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.329192 B = 7983.778697 C = 9227.600456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.038 3.962 4 C 0.077 3.923 5 N -0.576 5.576 6 C 0.246 3.754 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.540 3.460 16 O -0.533 6.533 17 C -0.095 4.095 18 C -0.067 4.067 19 C -0.093 4.093 20 C -0.149 4.149 21 C 0.337 3.663 22 C -0.188 4.188 23 F -0.195 7.195 24 F -0.196 7.196 25 C -0.096 4.096 26 C -0.125 4.125 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 21.588 2.197 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.040 4.040 4 C -0.047 4.047 5 N -0.306 5.306 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.327 3.673 16 O -0.411 6.411 17 C -0.098 4.098 18 C -0.086 4.086 19 C -0.111 4.111 20 C -0.150 4.150 21 C 0.301 3.699 22 C -0.246 4.246 23 F -0.176 7.176 24 F -0.177 7.177 25 C -0.114 4.114 26 C -0.143 4.143 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.152 0.848 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.694 20.914 1.625 21.736 hybrid contribution 0.789 -0.177 0.552 0.979 sum -4.905 20.737 2.176 21.420 Atomic orbital electron populations 1.22731 0.81940 1.02803 0.99142 1.88155 1.18818 1.26210 1.95107 1.23131 0.95060 0.86091 0.99709 1.22359 0.91671 1.00792 0.89834 1.48102 1.60654 1.09913 1.11939 1.19453 0.97604 0.71176 0.99053 1.21458 1.00201 0.92010 1.43086 0.92621 1.24901 0.96830 0.96917 0.95311 1.69945 1.32602 1.04187 1.46353 0.86533 0.83948 0.78629 0.78507 1.20665 1.21129 1.19966 1.18171 0.78979 0.85242 0.84951 1.90759 1.50890 1.74263 1.25161 1.20527 0.97207 0.95153 0.96913 1.21271 0.96575 0.93204 0.97529 1.20873 0.98390 0.94370 0.97511 1.20323 1.00286 0.93384 1.00991 1.19472 0.78683 0.91996 0.79731 1.22761 1.00546 1.01455 0.99803 1.93026 1.37057 1.93234 1.94309 1.93018 1.92034 1.93578 1.39022 1.20857 0.97622 0.94138 0.98784 1.22344 1.00511 0.94163 0.97264 0.94613 0.94510 0.89590 0.92614 0.93255 0.89001 0.87374 0.92716 0.94036 0.92817 0.84124 0.84768 0.89030 0.88991 0.89795 0.84817 0.82367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -6.23 8.83 -35.23 -0.31 -6.54 16 3 C 0.04 0.53 5.04 37.16 0.19 0.71 16 4 C 0.08 1.26 5.34 -4.04 -0.02 1.24 16 5 N -0.58 -12.36 2.46 -176.17 -0.43 -12.80 16 6 C 0.25 6.54 5.04 -5.19 -0.03 6.52 16 7 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 11 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.54 11.50 7.47 -12.33 -0.09 11.41 16 16 O -0.53 -13.55 16.25 5.32 0.09 -13.47 16 17 C -0.09 -1.53 5.59 -104.97 -0.59 -2.12 16 18 C -0.07 -0.97 9.60 -39.19 -0.38 -1.35 16 19 C -0.09 -1.10 9.38 -39.64 -0.37 -1.47 16 20 C -0.15 -1.65 5.00 -104.54 -0.52 -2.17 16 21 C 0.34 3.30 2.32 -27.89 -0.06 3.23 16 22 C -0.19 -1.25 9.37 37.15 0.35 -0.90 16 23 F -0.20 -2.17 16.20 2.25 0.04 -2.14 16 24 F -0.20 -2.10 16.19 2.25 0.04 -2.06 16 25 C -0.10 -1.04 9.38 -39.64 -0.37 -1.41 16 26 C -0.13 -1.59 7.49 -39.18 -0.29 -1.88 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.65 7.24 -51.93 -0.38 0.27 16 32 H 0.09 1.59 8.13 -51.93 -0.42 1.17 16 33 H 0.11 1.46 4.05 -52.01 -0.21 1.25 16 34 H 0.05 1.50 6.41 -51.93 -0.33 1.17 16 35 H 0.04 1.26 7.35 -51.93 -0.38 0.87 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.14 2.09 7.92 -52.48 -0.42 1.67 16 38 H 0.13 1.32 7.59 -52.49 -0.40 0.92 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.13 1.12 7.58 -52.49 -0.40 0.73 16 43 H 0.16 1.82 2.58 -52.48 -0.14 1.68 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -34.85 362.89 -6.48 -41.32 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.57 Total: -0.27 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.50 Total: -0.51 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.30 Total: -38.93 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.22 Total: -20.00 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.07 Total: -4.20 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.85 -6.48 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590033246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.365 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds