Wall clock time and date at job start Tue Mar 31 2020 16:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99551 * 2 1 4 4 C 1.53008 * 109.46657 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47169 * 64.99852 * 4 3 2 6 6 C 1.46499 * 119.99752 * 278.04315 * 5 4 3 7 7 C 1.50699 * 109.47422 * 270.00164 * 6 5 4 8 8 H 1.08000 * 119.99931 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99961 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99912 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99827 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46954 * 90.00208 * 11 9 7 13 13 H 1.48501 * 109.46938 * 210.00306 * 11 9 7 14 14 H 1.48501 * 109.47066 * 329.99995 * 11 9 7 15 15 C 1.34771 * 119.99989 * 98.05288 * 5 4 3 16 16 O 1.21551 * 119.99967 * 186.16399 * 15 5 4 17 17 C 1.47852 * 120.00222 * 6.16055 * 15 5 4 18 18 C 1.39570 * 120.14579 * 150.64867 * 17 15 5 19 19 C 1.37959 * 119.85124 * 180.02562 * 18 17 15 20 20 C 1.38361 * 120.14705 * 0.02562 * 19 18 17 21 21 C 1.50695 * 119.85234 * 179.97438 * 20 19 18 22 22 C 1.52992 * 109.47455 * 89.99944 * 21 20 19 23 23 F 1.39908 * 109.47181 * 329.99725 * 21 20 19 24 24 F 1.39898 * 109.47064 * 209.99961 * 21 20 19 25 25 C 1.38351 * 120.28931 * 0.23151 * 20 19 18 26 26 C 1.37955 * 120.14863 * 359.48888 * 25 20 19 27 27 H 1.08997 * 109.47397 * 300.00284 * 1 2 3 28 28 H 1.09000 * 109.47572 * 59.99966 * 1 2 3 29 29 H 1.08999 * 109.46874 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47234 * 59.99917 * 3 2 1 31 31 H 1.09000 * 109.47228 * 299.99717 * 3 2 1 32 32 H 1.08997 * 109.46790 * 304.99761 * 4 3 2 33 33 H 1.08998 * 109.46897 * 185.00095 * 4 3 2 34 34 H 1.08997 * 109.47382 * 30.00814 * 6 5 4 35 35 H 1.09000 * 109.46612 * 150.00503 * 6 5 4 36 36 H 0.97001 * 119.99879 * 179.97438 * 10 9 7 37 37 H 1.08004 * 120.07413 * 359.97438 * 18 17 15 38 38 H 1.08001 * 119.92372 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47114 * 59.99586 * 22 21 20 40 40 H 1.09002 * 109.47242 * 299.99703 * 22 21 20 41 41 H 1.08997 * 109.47294 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.92905 * 179.74655 * 25 20 19 43 43 H 1.08006 * 120.07910 * 180.25019 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 3.9372 -0.8925 -1.4015 7 6 5.2478 -1.4790 -0.9440 8 1 6.0310 -0.8313 -0.5785 9 6 5.4468 -2.8425 -0.9910 10 7 4.4929 -3.6312 -1.4356 11 14 7.0711 -3.5695 -0.4233 12 1 6.9941 -3.8810 1.0266 13 1 7.3486 -4.8149 -1.1831 14 1 8.1620 -2.5906 -0.6621 15 6 4.4161 1.3341 -2.2676 16 8 4.6751 0.8314 -3.3435 17 6 4.5843 2.7900 -2.0722 18 6 5.5501 3.4877 -2.7991 19 6 5.7022 4.8461 -2.6117 20 6 4.9003 5.5165 -1.7051 21 6 5.0725 7.0002 -1.5052 22 6 4.1649 7.7547 -2.4786 23 9 6.4057 7.3512 -1.7433 24 9 4.7292 7.3366 -0.1914 25 6 3.9447 4.8298 -0.9775 26 6 3.7784 3.4724 -1.1596 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.1266 -1.2983 -0.7963 35 1 3.7713 -1.1464 -2.4484 36 1 4.6330 -4.5905 -1.4690 37 1 6.1775 2.9654 -3.5062 38 1 6.4488 5.3872 -3.1739 39 1 3.1262 7.4812 -2.2931 40 1 4.4323 7.4927 -3.5022 41 1 4.2891 8.8279 -2.3336 42 1 3.3247 5.3582 -0.2684 43 1 3.0293 2.9382 -0.5939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590033246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:54 Heat of formation + Delta-G solvation = -143.811523 kcal Electronic energy + Delta-G solvation = -28355.608077 eV Core-core repulsion = 24037.308030 eV Total energy + Delta-G solvation = -4318.300047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.03231 -48.04997 -41.67503 -39.51178 -38.84561 -36.74155 -35.05179 -33.97316 -32.44443 -31.19867 -30.74244 -29.03942 -27.20402 -26.12350 -24.62659 -24.01077 -23.77685 -22.44179 -20.67379 -18.90236 -18.68751 -18.58868 -18.27516 -17.59128 -17.28572 -17.11553 -16.79210 -16.44159 -16.16632 -15.77812 -15.70125 -15.31728 -14.96048 -14.89548 -14.70308 -14.46481 -14.29900 -14.17094 -14.06920 -13.54224 -13.42677 -13.38110 -13.15889 -13.10239 -13.03355 -12.84391 -12.76033 -12.56130 -12.23135 -12.07652 -12.02463 -11.81541 -11.69852 -10.79765 -10.64479 -10.52872 -10.13769 -10.02085 -9.48162 -8.20789 -6.35657 -0.37395 0.21008 1.35298 1.38476 1.48592 1.73044 2.16772 2.40722 2.58500 2.63519 2.87889 3.08208 3.09499 3.37715 3.47872 3.70761 3.81967 3.87913 4.06018 4.18124 4.22006 4.31070 4.32119 4.41019 4.51408 4.53186 4.60298 4.65130 4.71749 4.87942 4.88701 4.90675 5.01879 5.05740 5.14734 5.22330 5.28644 5.33168 5.52757 5.66150 5.83727 6.07906 6.32816 6.67412 6.74097 7.21716 7.37865 8.86579 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.003506 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.329192 B = 7983.778697 C = 9227.600456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.038 3.962 4 C 0.071 3.929 5 N -0.583 5.583 6 C 0.267 3.733 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.009 3.991 10 N -0.926 5.926 11 Si 0.968 3.032 12 H -0.263 1.263 13 H -0.279 1.279 14 H -0.273 1.273 15 C 0.532 3.468 16 O -0.593 6.593 17 C -0.119 4.119 18 C -0.080 4.080 19 C -0.086 4.086 20 C -0.141 4.141 21 C 0.335 3.665 22 C -0.186 4.186 23 F -0.204 7.204 24 F -0.199 7.199 25 C -0.082 4.082 26 C -0.117 4.117 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.042 0.958 35 H -0.010 1.010 36 H 0.267 0.733 37 H 0.124 0.876 38 H 0.155 0.845 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.170 0.830 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 24.778 4.147 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.039 4.039 4 C -0.051 4.051 5 N -0.311 5.311 6 C 0.146 3.854 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.190 4.190 10 N -0.565 5.565 11 Si 0.792 3.208 12 H -0.188 1.188 13 H -0.205 1.205 14 H -0.198 1.198 15 C 0.322 3.678 16 O -0.475 6.475 17 C -0.123 4.123 18 C -0.099 4.099 19 C -0.104 4.104 20 C -0.142 4.142 21 C 0.299 3.701 22 C -0.243 4.243 23 F -0.185 7.185 24 F -0.180 7.180 25 C -0.100 4.100 26 C -0.134 4.134 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.159 0.841 34 H 0.060 0.940 35 H 0.008 0.992 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.172 0.828 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.188 0.812 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.969 24.147 3.618 25.136 hybrid contribution 0.830 -1.068 -0.058 1.354 sum -5.139 23.079 3.560 23.911 Atomic orbital electron populations 1.22884 0.79893 1.03145 1.01020 1.88083 1.21279 1.28330 1.95527 1.23227 0.92777 0.85515 1.02341 1.22766 0.94061 1.01603 0.86695 1.48042 1.60910 1.08088 1.14079 1.18798 0.96474 0.74772 0.95337 1.21739 1.00872 0.92628 1.43429 0.93088 1.25848 1.00736 0.97301 0.95147 1.70072 1.34764 1.04621 1.47062 0.85417 0.78920 0.77642 0.78824 1.18804 1.20455 1.19808 1.19006 0.77437 0.87535 0.83859 1.90704 1.53382 1.76024 1.27431 1.20129 1.00120 0.91840 1.00163 1.21225 0.96597 0.94476 0.97576 1.20998 0.98754 0.92966 0.97668 1.20630 0.99289 0.94487 0.99760 1.19714 0.78890 0.91208 0.80273 1.22818 1.00449 1.01911 0.99138 1.93017 1.37945 1.93193 1.94360 1.93017 1.92009 1.93491 1.39472 1.21190 0.97260 0.93053 0.98460 1.22377 0.99808 0.95046 0.96181 0.91496 0.93691 0.90229 0.87746 0.92437 0.90415 0.84120 0.93992 0.99156 0.92451 0.85758 0.82778 0.87602 0.88284 0.88397 0.81248 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.41 -14.10 8.83 -148.98 -1.32 -15.42 16 3 C 0.04 1.00 5.04 71.98 0.36 1.36 16 4 C 0.07 2.27 5.34 86.38 0.46 2.73 16 5 N -0.58 -26.20 2.46 -829.57 -2.04 -28.24 16 6 C 0.27 15.21 5.04 85.63 0.43 15.64 16 7 C -0.55 -33.01 9.39 25.60 0.24 -32.77 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.52 5.46 84.66 0.46 0.98 16 10 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 11 Si 0.97 46.30 29.54 68.60 2.03 48.33 16 12 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 15 C 0.53 23.95 7.47 86.79 0.65 24.60 16 16 O -0.59 -32.69 16.25 -3.88 -0.06 -32.75 16 17 C -0.12 -3.88 5.59 -20.09 -0.11 -3.99 16 18 C -0.08 -2.34 9.60 22.53 0.22 -2.12 16 19 C -0.09 -1.87 9.38 22.23 0.21 -1.66 16 20 C -0.14 -2.62 5.00 -19.81 -0.10 -2.72 16 21 C 0.34 5.27 2.32 29.84 0.07 5.34 16 22 C -0.19 -1.70 9.37 71.98 0.67 -1.03 16 23 F -0.20 -3.91 16.20 44.97 0.73 -3.18 16 24 F -0.20 -3.44 16.19 44.97 0.73 -2.71 16 25 C -0.08 -1.43 9.38 22.23 0.21 -1.22 16 26 C -0.12 -2.68 7.49 22.53 0.17 -2.51 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.40 7.24 -2.39 -0.02 1.38 16 32 H 0.08 2.71 8.13 -2.39 -0.02 2.69 16 33 H 0.14 3.54 4.05 -2.46 -0.01 3.53 16 34 H 0.04 2.47 6.41 -2.39 -0.02 2.45 16 35 H -0.01 -0.64 7.35 -2.39 -0.02 -0.66 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.12 3.96 7.92 -2.91 -0.02 3.94 16 38 H 0.15 2.69 7.59 -2.91 -0.02 2.66 16 39 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.17 1.84 7.58 -2.91 -0.02 1.82 16 43 H 0.17 3.43 2.58 -2.91 -0.01 3.42 16 Total: -1.00 -82.24 362.89 6.57 -75.67 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.04 Total: 11.34 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.19 Total: 4.53 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.76 Total: -85.80 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.38 Total: -48.17 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 1.46 Total: -5.89 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -82.24 6.57 -75.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590033246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.142 kcal (2) G-P(sol) polarization free energy of solvation -82.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds