Wall clock time and date at job start Tue Mar 31 2020 16:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47399 * 2 1 4 4 C 1.36369 * 120.87695 * 95.53017 * 3 2 1 5 5 C 1.41253 * 117.91031 * 180.02562 * 4 3 2 6 6 O 1.22040 * 120.24650 * 179.97438 * 5 4 3 7 7 N 1.34624 * 119.50876 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.10570 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46955 * 89.99751 * 8 7 5 10 10 O 1.21295 * 120.00642 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99742 * 180.02562 * 9 8 7 12 12 C 1.37101 * 120.00042 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99912 * 0.02562 * 12 11 9 14 14 C 1.38955 * 120.00445 * 179.97438 * 12 11 9 15 15 N 1.31409 * 119.99456 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00135 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46949 * 90.00436 * 16 14 12 18 18 H 1.48504 * 109.46951 * 210.00127 * 16 14 12 19 19 H 1.48495 * 109.47505 * 330.00256 * 16 14 12 20 20 N 1.28375 * 121.78555 * 0.25420 * 7 5 4 21 21 C 1.31223 * 122.29783 * 359.47775 * 20 7 5 22 22 C 1.48352 * 119.87334 * 180.28857 * 21 20 7 23 23 C 1.39364 * 120.12032 * 127.68845 * 22 21 20 24 24 C 1.38014 * 119.87372 * 179.71734 * 23 22 21 25 25 C 1.38323 * 120.12362 * 0.55918 * 24 23 22 26 26 C 1.38322 * 120.24733 * 359.71939 * 25 24 23 27 27 C 1.38011 * 120.12655 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47197 * 299.99984 * 1 2 3 29 29 H 1.09002 * 109.46689 * 59.99779 * 1 2 3 30 30 H 1.08997 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47018 * 239.99358 * 2 1 3 32 32 H 1.09002 * 109.46689 * 120.00221 * 2 1 3 33 33 H 1.07998 * 121.03979 * 0.04804 * 4 3 2 34 34 H 1.09005 * 109.47034 * 330.00076 * 8 7 5 35 35 H 1.08997 * 109.47119 * 209.99876 * 8 7 5 36 36 H 0.97000 * 120.00403 * 359.72282 * 11 9 8 37 37 H 0.97000 * 119.99972 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.06013 * 359.97438 * 23 22 21 39 39 H 1.08000 * 119.93501 * 180.29540 * 24 23 22 40 40 H 1.07995 * 119.87880 * 179.73703 * 25 24 23 41 41 H 1.08006 * 119.94077 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.06423 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3721 2.0430 1.1650 5 6 2.8352 3.3754 1.0923 6 8 3.1503 3.9730 2.1086 7 7 2.9253 3.9816 -0.1064 8 6 3.4062 5.3640 -0.1715 9 6 4.9047 5.3675 -0.3314 10 8 5.5114 4.3186 -0.3861 11 7 5.5709 6.5362 -0.4136 12 6 6.9342 6.5395 -0.5585 13 1 7.4743 5.6055 -0.6072 14 6 7.6210 7.7444 -0.6438 15 7 6.9638 8.8808 -0.5850 16 14 9.4784 7.7487 -0.8419 17 1 9.8221 7.7361 -2.2866 18 1 10.0408 8.9693 -0.2100 19 1 10.0490 6.5445 -0.1868 20 7 2.5963 3.3830 -1.1933 21 6 2.1626 2.1446 -1.2082 22 6 1.8032 1.5029 -2.4965 23 6 2.3517 0.2687 -2.8401 24 6 2.0093 -0.3264 -4.0373 25 6 1.1326 0.3052 -4.9008 26 6 0.5897 1.5330 -4.5676 27 6 0.9209 2.1350 -3.3706 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.2899 1.5328 2.1133 34 1 3.1376 5.8858 0.7471 35 1 2.9488 5.8681 -1.0228 36 1 5.0854 7.3750 -0.3739 37 1 7.4431 9.7220 -0.6450 38 1 3.0401 -0.2231 -2.1688 39 1 2.4301 -1.2851 -4.3023 40 1 0.8707 -0.1621 -5.8385 41 1 -0.0941 2.0220 -5.2457 42 1 0.4960 3.0935 -3.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592354280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:33 Heat of formation + Delta-G solvation = 17.207696 kcal Electronic energy + Delta-G solvation = -27159.989223 eV Core-core repulsion = 23299.360679 eV Total energy + Delta-G solvation = -3860.628544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.91881 -39.41655 -38.14144 -37.43737 -36.12424 -34.03834 -32.85496 -31.70376 -31.28453 -31.03690 -30.00589 -27.94231 -25.34909 -24.78021 -24.22409 -22.54950 -21.97272 -21.53401 -19.74264 -18.39649 -18.19021 -17.49570 -16.82570 -16.52144 -15.89891 -15.39428 -15.32274 -14.87913 -14.54751 -14.38091 -14.11744 -14.03227 -13.91345 -13.63584 -13.53118 -13.36749 -12.97169 -12.79510 -12.69953 -12.28533 -11.94106 -11.77014 -11.60619 -11.53397 -11.43801 -11.26061 -11.07631 -10.73209 -10.42548 -10.28727 -10.12562 -9.59287 -9.53083 -9.07970 -9.03314 -8.65060 -8.06060 -8.01416 -6.47892 -3.89179 0.66565 0.96902 1.25920 1.87805 2.41202 3.14536 3.24422 3.30841 3.48624 3.69777 3.75365 4.06477 4.13806 4.40262 4.59619 4.63419 4.78163 4.82242 4.85613 4.96694 5.06012 5.08337 5.17217 5.28606 5.32949 5.40684 5.50325 5.54311 5.64603 5.67881 5.75177 5.76993 5.85898 5.93214 5.96300 6.05883 6.10348 6.21664 6.33809 6.36736 6.41232 6.79387 7.49961 7.85346 7.95735 8.37604 8.49865 9.09006 9.41115 9.90781 10.69267 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.003214 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.148255 B = 8709.587218 C = 9769.288113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.022 4.022 4 C -0.193 4.193 5 C 0.486 3.514 6 O -0.529 6.529 7 N -0.312 5.312 8 C 0.097 3.903 9 C 0.430 3.570 10 O -0.585 6.585 11 N -0.550 5.550 12 C -0.301 4.301 13 H 0.104 0.896 14 C 0.026 3.974 15 N -0.897 5.897 16 Si 0.933 3.067 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.269 1.269 20 N -0.184 5.184 21 C 0.080 3.920 22 C -0.012 4.012 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.089 4.089 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.160 0.840 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.395 0.605 37 H 0.274 0.726 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.955 -16.395 -5.607 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.027 4.027 4 C -0.223 4.223 5 C 0.285 3.715 6 O -0.406 6.406 7 N -0.131 5.131 8 C -0.027 4.027 9 C 0.214 3.786 10 O -0.470 6.470 11 N -0.186 5.186 12 C -0.430 4.430 13 H 0.122 0.878 14 C -0.177 4.177 15 N -0.537 5.537 16 Si 0.759 3.241 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 N -0.008 5.008 21 C -0.089 4.089 22 C -0.014 4.014 23 C -0.118 4.118 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.108 4.108 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.178 0.822 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.228 0.772 37 H 0.083 0.917 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.050 -15.706 -5.511 23.122 hybrid contribution 0.689 0.198 0.541 0.898 sum -15.361 -15.508 -4.970 22.386 Atomic orbital electron populations 1.21693 0.93743 1.02195 1.02516 1.20862 0.97025 0.91207 1.04420 1.20967 0.92594 0.97161 0.92008 1.22463 1.05323 0.94503 0.99986 1.17950 0.81081 0.88774 0.83739 1.90972 1.50600 1.66352 1.32726 1.46136 1.49745 1.14109 1.03105 1.21788 0.96403 0.78444 1.06038 1.19688 0.87654 0.85481 0.85766 1.90558 1.68657 1.31432 1.56340 1.41723 1.07955 1.06204 1.62681 1.19711 0.81540 0.94565 1.47192 0.87841 1.25293 1.00887 0.94559 0.96942 1.69607 1.36917 0.97643 1.49578 0.85815 0.81794 0.77929 0.78525 1.20262 1.20760 1.19343 1.70973 1.05230 1.10469 1.14127 1.19910 1.05622 0.89880 0.93496 1.17970 0.97813 0.94252 0.91381 1.21182 0.99099 0.94582 0.96977 1.21040 0.98435 1.00233 0.94039 1.21217 0.97268 0.95498 0.99404 1.21088 1.00405 0.95698 0.96624 1.21220 0.96804 0.99310 0.93506 0.92427 0.92141 0.91833 0.88997 0.90033 0.82216 0.86064 0.86637 0.77160 0.91656 0.85410 0.85702 0.86039 0.85785 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.90 37.16 0.37 -0.72 16 2 C -0.10 -0.86 5.62 -27.88 -0.16 -1.02 16 3 C -0.02 -0.28 5.15 -104.08 -0.54 -0.82 16 4 C -0.19 -2.92 9.78 -39.11 -0.38 -3.30 16 5 C 0.49 9.51 7.46 -15.18 -0.11 9.40 16 6 O -0.53 -11.98 16.62 4.88 0.08 -11.90 16 7 N -0.31 -6.01 2.71 -64.50 -0.17 -6.18 16 8 C 0.10 1.89 6.04 -5.19 -0.03 1.86 16 9 C 0.43 10.76 7.85 -10.99 -0.09 10.67 16 10 O -0.59 -16.94 16.01 5.54 0.09 -16.85 16 11 N -0.55 -14.31 5.29 -10.96 -0.06 -14.37 16 12 C -0.30 -8.57 9.68 -14.93 -0.14 -8.71 16 13 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 14 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 15 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 16 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 20 N -0.18 -3.24 10.79 33.47 0.36 -2.87 16 21 C 0.08 1.17 6.36 -82.75 -0.53 0.64 16 22 C -0.01 -0.15 5.08 -104.90 -0.53 -0.68 16 23 C -0.10 -1.02 7.80 -39.24 -0.31 -1.33 16 24 C -0.12 -1.02 10.03 -39.63 -0.40 -1.42 16 25 C -0.12 -0.94 10.04 -39.52 -0.40 -1.34 16 26 C -0.12 -1.07 10.03 -39.63 -0.40 -1.46 16 27 C -0.09 -0.96 9.73 -39.25 -0.38 -1.34 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.49 8.02 -51.93 -0.42 0.08 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.73 4.49 -51.93 -0.23 0.50 16 32 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 33 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.12 2.20 7.36 -51.93 -0.38 1.82 16 35 H 0.12 1.85 8.13 -51.93 -0.42 1.43 16 36 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 38 H 0.13 1.20 6.83 -52.49 -0.36 0.84 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -35.84 364.22 -7.65 -43.50 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.02 Total: 9.60 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -4.12 Total: 1.02 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.85 Total: -47.14 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: 0.17 Total: -28.75 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.84 -7.65 -43.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592354280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.706 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds