Wall clock time and date at job start Tue Mar 31 2020 16:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47399 * 2 1 4 4 C 1.36369 * 120.87695 * 95.53017 * 3 2 1 5 5 C 1.41253 * 117.91031 * 180.02562 * 4 3 2 6 6 O 1.22040 * 120.24650 * 179.97438 * 5 4 3 7 7 N 1.34624 * 119.50876 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.10570 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46955 * 89.99751 * 8 7 5 10 10 O 1.21295 * 120.00642 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99742 * 180.02562 * 9 8 7 12 12 C 1.37101 * 120.00042 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99912 * 0.02562 * 12 11 9 14 14 C 1.38955 * 120.00445 * 179.97438 * 12 11 9 15 15 N 1.31409 * 119.99456 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00135 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46949 * 90.00436 * 16 14 12 18 18 H 1.48504 * 109.46951 * 210.00127 * 16 14 12 19 19 H 1.48495 * 109.47505 * 330.00256 * 16 14 12 20 20 N 1.28375 * 121.78555 * 0.25420 * 7 5 4 21 21 C 1.31223 * 122.29783 * 359.47775 * 20 7 5 22 22 C 1.48352 * 119.87334 * 180.28857 * 21 20 7 23 23 C 1.39364 * 120.12032 * 127.68845 * 22 21 20 24 24 C 1.38014 * 119.87372 * 179.71734 * 23 22 21 25 25 C 1.38323 * 120.12362 * 0.55918 * 24 23 22 26 26 C 1.38322 * 120.24733 * 359.71939 * 25 24 23 27 27 C 1.38011 * 120.12655 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47197 * 299.99984 * 1 2 3 29 29 H 1.09002 * 109.46689 * 59.99779 * 1 2 3 30 30 H 1.08997 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47018 * 239.99358 * 2 1 3 32 32 H 1.09002 * 109.46689 * 120.00221 * 2 1 3 33 33 H 1.07998 * 121.03979 * 0.04804 * 4 3 2 34 34 H 1.09005 * 109.47034 * 330.00076 * 8 7 5 35 35 H 1.08997 * 109.47119 * 209.99876 * 8 7 5 36 36 H 0.97000 * 120.00403 * 359.72282 * 11 9 8 37 37 H 0.97000 * 119.99972 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.06013 * 359.97438 * 23 22 21 39 39 H 1.08000 * 119.93501 * 180.29540 * 24 23 22 40 40 H 1.07995 * 119.87880 * 179.73703 * 25 24 23 41 41 H 1.08006 * 119.94077 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.06423 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3721 2.0430 1.1650 5 6 2.8352 3.3754 1.0923 6 8 3.1503 3.9730 2.1086 7 7 2.9253 3.9816 -0.1064 8 6 3.4062 5.3640 -0.1715 9 6 4.9047 5.3675 -0.3314 10 8 5.5114 4.3186 -0.3861 11 7 5.5709 6.5362 -0.4136 12 6 6.9342 6.5395 -0.5585 13 1 7.4743 5.6055 -0.6072 14 6 7.6210 7.7444 -0.6438 15 7 6.9638 8.8808 -0.5850 16 14 9.4784 7.7487 -0.8419 17 1 9.8221 7.7361 -2.2866 18 1 10.0408 8.9693 -0.2100 19 1 10.0490 6.5445 -0.1868 20 7 2.5963 3.3830 -1.1933 21 6 2.1626 2.1446 -1.2082 22 6 1.8032 1.5029 -2.4965 23 6 2.3517 0.2687 -2.8401 24 6 2.0093 -0.3264 -4.0373 25 6 1.1326 0.3052 -4.9008 26 6 0.5897 1.5330 -4.5676 27 6 0.9209 2.1350 -3.3706 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.2899 1.5328 2.1133 34 1 3.1376 5.8858 0.7471 35 1 2.9488 5.8681 -1.0228 36 1 5.0854 7.3750 -0.3739 37 1 7.4431 9.7220 -0.6450 38 1 3.0401 -0.2231 -2.1688 39 1 2.4301 -1.2851 -4.3023 40 1 0.8707 -0.1621 -5.8385 41 1 -0.0941 2.0220 -5.2457 42 1 0.4960 3.0935 -3.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592354280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:32 Heat of formation + Delta-G solvation = -6.485435 kcal Electronic energy + Delta-G solvation = -27161.016635 eV Core-core repulsion = 23299.360679 eV Total energy + Delta-G solvation = -3861.655955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.23854 -40.45300 -39.93921 -38.78620 -37.25483 -36.11507 -33.99889 -33.44576 -32.62973 -31.77004 -31.10414 -29.36384 -26.98602 -25.93079 -25.60910 -23.31154 -22.88761 -22.55147 -21.58349 -20.20910 -19.59562 -18.73970 -18.49039 -17.72454 -17.04810 -16.94426 -16.52535 -16.28097 -15.99960 -15.71166 -15.67357 -15.24786 -14.91204 -14.83061 -14.58427 -14.36932 -14.23360 -14.05122 -13.62905 -13.55318 -13.47371 -13.39891 -12.93859 -12.72975 -12.54241 -12.45449 -12.23463 -12.17259 -12.01611 -11.64302 -11.60938 -11.26643 -10.87391 -10.59412 -10.16603 -9.99092 -9.77831 -9.31051 -8.56905 -6.07688 -0.53562 0.04689 0.54016 0.73329 1.06369 1.30805 1.37362 1.50763 1.81659 2.18548 2.28930 2.82270 2.97613 3.00272 3.09014 3.41572 3.52699 3.64531 4.03031 4.04082 4.10868 4.14673 4.16167 4.27015 4.33951 4.40894 4.44209 4.59980 4.60236 4.66010 4.72708 4.85737 5.00379 5.07625 5.10768 5.17610 5.23587 5.30651 5.39519 5.59265 5.61212 5.65535 5.83263 6.09580 6.40212 6.46416 6.97018 7.07313 7.33668 7.87918 8.59958 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.003214 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.148255 B = 8709.587218 C = 9769.288113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.005 4.005 4 C -0.207 4.207 5 C 0.468 3.532 6 O -0.580 6.580 7 N -0.325 5.325 8 C 0.108 3.892 9 C 0.426 3.574 10 O -0.630 6.630 11 N -0.554 5.554 12 C -0.341 4.341 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.912 5.912 16 Si 0.997 3.003 17 H -0.266 1.266 18 H -0.266 1.266 19 H -0.276 1.276 20 N -0.224 5.224 21 C 0.099 3.901 22 C -0.041 4.041 23 C -0.106 4.106 24 C -0.117 4.117 25 C -0.108 4.108 26 C -0.122 4.122 27 C -0.101 4.101 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.184 0.816 34 H 0.130 0.870 35 H 0.148 0.852 36 H 0.401 0.599 37 H 0.282 0.718 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.971 -18.534 -7.510 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.010 4.010 4 C -0.236 4.236 5 C 0.269 3.731 6 O -0.462 6.462 7 N -0.143 5.143 8 C -0.016 4.016 9 C 0.212 3.788 10 O -0.518 6.518 11 N -0.190 5.190 12 C -0.470 4.470 13 H 0.095 0.905 14 C -0.207 4.207 15 N -0.552 5.552 16 Si 0.820 3.180 17 H -0.191 1.191 18 H -0.190 1.190 19 H -0.200 1.200 20 N -0.046 5.046 21 C -0.072 4.072 22 C -0.043 4.043 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.140 4.140 27 C -0.120 4.120 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.201 0.799 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.105 -17.821 -7.445 25.799 hybrid contribution 0.892 0.711 0.960 1.490 sum -16.213 -17.110 -6.485 24.448 Atomic orbital electron populations 1.21684 0.92352 1.03648 1.02063 1.21036 0.97952 0.88181 1.06054 1.21443 0.90157 0.98937 0.90490 1.22639 1.06129 0.92826 1.01996 1.18669 0.80959 0.90192 0.83299 1.90920 1.53563 1.67675 1.34076 1.46036 1.50587 1.14079 1.03557 1.21646 0.92254 0.79921 1.07781 1.20598 0.89943 0.84392 0.83880 1.90505 1.70441 1.32887 1.57958 1.41754 1.07532 1.06873 1.62886 1.19656 0.82857 0.94309 1.50167 0.90513 1.26113 1.05289 0.93720 0.95620 1.69659 1.38658 0.98116 1.48726 0.84880 0.76118 0.78066 0.78964 1.19071 1.19011 1.20045 1.71019 1.07823 1.12292 1.13470 1.20682 1.02053 0.88905 0.95512 1.18046 0.99873 0.95429 0.90946 1.21331 0.99173 0.93907 0.98085 1.21386 0.97945 1.01124 0.93037 1.21637 0.95937 0.94866 1.00214 1.21379 1.00520 0.96109 0.95993 1.21301 0.97082 0.99357 0.94283 0.92697 0.92854 0.89394 0.87642 0.88091 0.79916 0.85191 0.83476 0.76448 0.90826 0.84846 0.82943 0.83060 0.83631 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.90 71.98 0.71 -1.04 16 2 C -0.10 -1.44 5.62 29.85 0.17 -1.27 16 3 C 0.00 -0.11 5.15 -19.51 -0.10 -0.21 16 4 C -0.21 -6.34 9.78 22.57 0.22 -6.12 16 5 C 0.47 19.22 7.46 85.01 0.63 19.86 16 6 O -0.58 -27.91 16.62 -5.45 -0.09 -28.00 16 7 N -0.33 -13.11 2.71 -476.14 -1.29 -14.40 16 8 C 0.11 4.40 6.04 85.63 0.52 4.92 16 9 C 0.43 22.41 7.85 87.66 0.69 23.10 16 10 O -0.63 -38.53 16.01 -3.08 -0.05 -38.58 16 11 N -0.55 -30.15 5.29 -306.98 -1.62 -31.77 16 12 C -0.34 -20.18 9.68 84.04 0.81 -19.37 16 13 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 14 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 15 N -0.91 -49.78 13.05 21.66 0.28 -49.50 16 16 Si 1.00 43.79 29.55 68.60 2.03 45.81 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 N -0.22 -8.12 10.79 -48.02 -0.52 -8.64 16 21 C 0.10 2.87 6.36 42.72 0.27 3.14 16 22 C -0.04 -0.94 5.08 -20.04 -0.10 -1.04 16 23 C -0.11 -1.93 7.80 22.49 0.18 -1.76 16 24 C -0.12 -1.58 10.03 22.24 0.22 -1.35 16 25 C -0.11 -1.35 10.04 22.31 0.22 -1.13 16 26 C -0.12 -1.84 10.03 22.24 0.22 -1.62 16 27 C -0.10 -2.07 9.73 22.49 0.22 -1.85 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.75 8.02 -2.39 -0.02 0.73 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 1.37 4.49 -2.39 -0.01 1.36 16 32 H 0.10 1.20 8.06 -2.39 -0.02 1.19 16 33 H 0.18 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.13 4.99 7.36 -2.38 -0.02 4.98 16 35 H 0.15 4.88 8.13 -2.39 -0.02 4.86 16 36 H 0.40 20.30 7.90 -92.71 -0.73 19.57 16 37 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.13 2.21 6.83 -2.91 -0.02 2.19 16 39 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -82.18 364.22 4.43 -77.75 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.34 Total: 32.94 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 5.35 Total: 14.38 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -3.15 Total: -104.31 kcal Atomic # 8 Polarization: -66.44 SS G_CDS: -0.14 Total: -66.58 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -82.18 4.43 -77.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592354280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.267 kcal (2) G-P(sol) polarization free energy of solvation -82.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds