Wall clock time and date at job start Tue Mar 31 2020 16:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.30501 * 125.64898 * 269.69158 * 3 2 1 5 5 C 1.34125 * 109.25535 * 179.89273 * 4 3 2 6 6 S 1.76204 * 125.98928 * 180.11612 * 5 4 3 7 7 O 1.42098 * 106.39928 * 83.83915 * 6 5 4 8 8 O 1.42102 * 106.40159 * 216.76106 * 6 5 4 9 9 N 1.65603 * 107.21785 * 330.30268 * 6 5 4 10 10 C 1.46489 * 119.99987 * 64.99861 * 9 6 5 11 11 H 1.09003 * 109.47568 * 335.00173 * 10 9 6 12 12 C 1.53007 * 109.47148 * 95.00156 * 10 9 6 13 13 C 1.50700 * 109.47171 * 215.00076 * 10 9 6 14 14 H 1.08003 * 120.00116 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00363 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00382 * 179.97438 * 15 13 10 17 17 Si 1.86809 * 119.99715 * 359.97438 * 15 13 10 18 18 H 1.48499 * 109.46919 * 90.00160 * 17 15 13 19 19 H 1.48505 * 109.46779 * 210.00145 * 17 15 13 20 20 H 1.48496 * 109.47229 * 330.00113 * 17 15 13 21 21 C 1.34666 * 108.02059 * 0.37235 * 5 4 3 22 22 N 1.35041 * 125.64895 * 90.00187 * 3 2 1 23 23 C 1.46495 * 126.39891 * 359.94346 * 22 3 2 24 24 C 1.52998 * 109.47142 * 85.00082 * 23 22 3 25 25 C 1.53007 * 117.49756 * 243.62067 * 24 23 22 26 26 C 1.53008 * 60.00094 * 252.51198 * 25 24 23 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 0.97005 * 119.99537 * 245.00304 * 9 6 5 33 33 H 1.08995 * 109.46999 * 59.99874 * 12 10 9 34 34 H 1.09000 * 109.47120 * 179.97438 * 12 10 9 35 35 H 1.09001 * 109.46575 * 299.99781 * 12 10 9 36 36 H 0.97000 * 119.99749 * 179.97438 * 16 15 13 37 37 H 1.08007 * 126.59110 * 179.73953 * 21 5 4 38 38 H 1.09002 * 109.47216 * 205.00166 * 23 22 3 39 39 H 1.08997 * 109.47324 * 324.99567 * 23 22 3 40 40 H 1.08997 * 115.55260 * 29.32949 * 24 23 22 41 41 H 1.09002 * 117.49574 * 359.97438 * 25 24 23 42 42 H 1.08994 * 117.49474 * 145.02060 * 25 24 23 43 43 H 1.08998 * 117.49376 * 252.51268 * 26 25 24 44 44 H 1.08994 * 117.51634 * 107.47918 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2912 2.1361 -1.0604 5 6 2.7159 3.3507 -0.6819 6 16 3.1829 4.6659 -1.7574 7 8 1.9814 5.3300 -2.1243 8 8 4.2762 5.3254 -1.1336 9 7 3.7790 3.9792 -3.1415 10 6 2.8981 3.1898 -4.0056 11 1 2.0722 2.7916 -3.4160 12 6 2.3458 4.0801 -5.1206 13 6 3.6775 2.0511 -4.6115 14 1 4.7245 1.9281 -4.3767 15 6 3.0542 1.1670 -5.4664 16 7 3.7345 0.1736 -5.9956 17 14 1.2434 1.3801 -5.8731 18 1 1.1037 2.2491 -7.0691 19 1 0.6393 0.0526 -6.1524 20 1 0.5479 2.0080 -4.7210 21 6 2.7282 3.3869 0.6642 22 7 2.2946 2.1629 1.0973 23 6 2.1431 1.7375 2.4910 24 6 3.4049 0.9967 2.9382 25 6 3.2608 -0.4786 3.3174 26 6 3.4920 0.5720 4.4055 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 4.7115 4.0997 -3.3799 33 1 3.1716 4.4782 -5.7102 34 1 1.6907 3.4926 -5.7638 35 1 1.7821 4.9036 -4.6823 36 1 3.2959 -0.4486 -6.5967 37 1 3.0240 4.2211 1.2831 38 1 1.9920 2.6123 3.1235 39 1 1.2825 1.0742 2.5769 40 1 4.3286 1.3026 2.4471 41 1 2.2671 -0.9212 3.2487 42 1 4.0899 -1.1435 3.0756 43 1 4.4732 0.5980 4.8795 44 1 2.6506 0.8207 5.0522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595313204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:24 Heat of formation + Delta-G solvation = 10.145705 kcal Electronic energy + Delta-G solvation = -26860.597771 eV Core-core repulsion = 23135.106948 eV Total energy + Delta-G solvation = -3725.490823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.19940 -38.01649 -36.64919 -35.47485 -35.30629 -33.89951 -33.61467 -32.03944 -29.10671 -28.87169 -27.54979 -24.93529 -23.97747 -22.90031 -22.26915 -21.34212 -20.85434 -19.92991 -18.80352 -17.84954 -17.12075 -16.10352 -15.97572 -15.88407 -15.53076 -15.45310 -14.69348 -14.51472 -14.40755 -14.11374 -13.59351 -13.42169 -13.32642 -12.89407 -12.54444 -12.25763 -12.12517 -12.04859 -11.99407 -11.72629 -11.63916 -11.54889 -11.45630 -11.25358 -11.13178 -11.07203 -10.87877 -10.59434 -10.50309 -10.06419 -9.84757 -9.76574 -9.41338 -9.09343 -8.66430 -8.59812 -8.29263 -6.01821 -4.00241 1.09262 1.74474 2.52742 2.88222 3.27299 3.35639 3.45424 3.51325 3.62802 4.12261 4.17783 4.30568 4.37729 4.47947 4.49691 4.60170 4.69146 4.81126 5.00494 5.01541 5.17058 5.18834 5.23671 5.32786 5.42179 5.44227 5.47640 5.63935 5.68133 5.74588 5.96635 6.09892 6.14827 6.24668 6.40044 6.48789 6.71325 6.80031 7.08982 7.16688 7.46922 7.65717 7.99518 8.06742 8.58115 9.00380 9.59810 11.11159 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.004826 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.291557 B = 5800.355742 C = 7077.859320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C 0.213 3.787 4 N -0.391 5.391 5 C -0.542 4.542 6 S 2.723 3.277 7 O -0.963 6.963 8 O -0.980 6.980 9 N -1.083 6.083 10 C 0.246 3.754 11 H 0.060 0.940 12 C -0.173 4.173 13 C -0.510 4.510 14 H 0.079 0.921 15 C 0.076 3.924 16 N -0.900 5.900 17 Si 0.879 3.121 18 H -0.278 1.278 19 H -0.297 1.297 20 H -0.260 1.260 21 C 0.050 3.950 22 N -0.448 5.448 23 C 0.132 3.868 24 C -0.180 4.180 25 C -0.173 4.173 26 C -0.168 4.168 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.412 0.588 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.187 0.813 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 -0.247 20.760 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.052 4.052 4 N -0.107 5.107 5 C -0.753 4.753 6 S 2.808 3.192 7 O -0.952 6.952 8 O -0.970 6.970 9 N -0.844 5.844 10 C 0.140 3.860 11 H 0.077 0.923 12 C -0.232 4.232 13 C -0.549 4.549 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.539 5.539 17 Si 0.709 3.291 18 H -0.205 1.205 19 H -0.225 1.225 20 H -0.185 1.185 21 C -0.090 4.090 22 N -0.129 5.129 23 C 0.009 3.991 24 C -0.199 4.199 25 C -0.210 4.210 26 C -0.205 4.205 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.247 0.753 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.204 0.796 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.650 0.122 20.207 20.736 hybrid contribution -0.397 -0.436 0.691 0.908 sum -5.047 -0.315 20.898 21.501 Atomic orbital electron populations 1.21757 0.94018 1.02295 1.02518 1.20041 0.96285 0.87025 1.04656 1.23664 1.03637 0.96932 0.80995 1.70545 1.12848 1.00456 1.26876 1.33615 1.20695 1.14002 1.06989 1.01004 0.73295 0.72435 0.72504 1.93571 1.48292 1.71180 1.82164 1.93539 1.53603 1.72729 1.77143 1.55074 1.21838 1.69991 1.37467 1.18981 0.89900 0.88959 0.88172 0.92289 1.22647 1.00412 0.99805 1.00343 1.21061 0.98362 1.08746 1.26734 0.90249 1.24821 0.97640 0.94829 0.95355 1.69884 1.36389 1.15824 1.31757 0.86991 0.86375 0.76221 0.79522 1.20518 1.22477 1.18488 1.22407 1.01987 0.89770 0.94799 1.45635 1.48403 1.11420 1.07461 1.21521 0.97572 1.00707 0.79280 1.22669 0.99548 0.98263 0.99382 1.23120 1.03652 0.91376 1.02860 1.22975 1.03658 1.03251 0.90621 0.93299 0.91365 0.91491 0.90327 0.87753 0.75325 0.92498 0.93517 0.93669 0.92696 0.79609 0.88285 0.88503 0.86788 0.88297 0.88205 0.88217 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.04 -0.51 6.09 -27.88 -0.17 -0.68 16 3 C 0.21 3.36 7.16 -155.42 -1.11 2.25 16 4 N -0.39 -7.82 9.97 -10.02 -0.10 -7.92 16 5 C -0.54 -10.15 7.01 -17.81 -0.12 -10.27 16 6 S 2.72 53.74 5.78 -107.50 -0.62 53.12 16 7 O -0.96 -21.07 17.28 -57.17 -0.99 -22.06 16 8 O -0.98 -19.41 17.95 -57.17 -1.03 -20.43 16 9 N -1.08 -22.97 5.46 -5.88 -0.03 -23.00 16 10 C 0.25 6.01 2.27 -69.08 -0.16 5.86 16 11 H 0.06 1.51 5.77 -51.93 -0.30 1.21 16 12 C -0.17 -4.04 9.00 37.16 0.33 -3.70 16 13 C -0.51 -14.18 9.34 -34.44 -0.32 -14.50 16 14 H 0.08 2.36 8.06 -52.48 -0.42 1.93 16 15 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 16 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 17 Si 0.88 22.19 24.37 -169.99 -4.14 18.05 16 18 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 19 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 21 C 0.05 0.74 11.43 -16.56 -0.19 0.55 16 22 N -0.45 -5.79 2.75 -113.91 -0.31 -6.11 16 23 C 0.13 1.07 5.96 -4.05 -0.02 1.04 16 24 C -0.18 -1.40 6.01 -90.61 -0.54 -1.94 16 25 C -0.17 -1.13 9.68 -26.72 -0.26 -1.39 16 26 C -0.17 -0.95 10.25 -26.72 -0.27 -1.22 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.74 7.33 -51.93 -0.38 0.36 16 31 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.41 7.99 8.83 -34.47 -0.30 7.69 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 35 H 0.04 0.98 7.64 -51.93 -0.40 0.59 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.19 2.05 8.06 -52.48 -0.42 1.63 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.63 7.65 -51.93 -0.40 0.24 16 40 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.10 0.54 8.03 -51.93 -0.42 0.13 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -36.24 371.91 -10.04 -46.27 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.62 Total: 6.10 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -2.57 Total: -23.17 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: 0.33 Total: -63.49 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -2.01 Total: -42.49 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.05 kcal Atomic # 16 Polarization: 53.74 SS G_CDS: -0.62 Total: 53.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.24 -10.04 -46.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595313204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.420 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds