Wall clock time and date at job start Tue Mar 31 2020 16:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47506 * 2 1 4 4 N 1.30504 * 125.64482 * 269.69100 * 3 2 1 5 5 C 1.34127 * 109.25120 * 179.88912 * 4 3 2 6 6 S 1.76208 * 125.98644 * 180.11379 * 5 4 3 7 7 O 1.42097 * 106.39835 * 90.04146 * 6 5 4 8 8 O 1.42101 * 106.39838 * 222.96123 * 6 5 4 9 9 N 1.65594 * 107.21690 * 336.49792 * 6 5 4 10 10 C 1.46506 * 120.00096 * 65.59941 * 9 6 5 11 11 H 1.09002 * 109.46647 * 335.67327 * 10 9 6 12 12 C 1.53002 * 109.46950 * 215.67566 * 10 9 6 13 13 C 1.50698 * 109.47490 * 95.67282 * 10 9 6 14 14 H 1.08009 * 119.99914 * 0.02562 * 13 10 9 15 15 C 1.37873 * 120.00276 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99827 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00234 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46865 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.46920 * 120.00081 * 17 15 13 20 20 H 1.48493 * 109.47243 * 240.00275 * 17 15 13 21 21 C 1.34672 * 108.02377 * 0.37167 * 5 4 3 22 22 N 1.35039 * 125.65207 * 89.99311 * 3 2 1 23 23 C 1.46500 * 126.39977 * 359.97438 * 22 3 2 24 24 C 1.52998 * 109.47142 * 84.99529 * 23 22 3 25 25 C 1.53002 * 117.50025 * 243.62299 * 24 23 22 26 26 C 1.53000 * 59.99973 * 252.51192 * 25 24 23 27 27 H 1.08999 * 109.47684 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47130 * 300.00520 * 1 2 3 29 29 H 1.09001 * 109.46891 * 60.00375 * 1 2 3 30 30 H 1.09003 * 109.47130 * 239.99480 * 2 1 3 31 31 H 1.09001 * 109.46891 * 119.99624 * 2 1 3 32 32 H 0.96996 * 120.00256 * 245.59042 * 9 6 5 33 33 H 1.09004 * 109.46720 * 173.64701 * 12 10 9 34 34 H 1.08995 * 109.47019 * 293.64530 * 12 10 9 35 35 H 1.08996 * 109.47009 * 53.65327 * 12 10 9 36 36 H 0.97002 * 119.99817 * 179.97438 * 16 15 13 37 37 H 1.07999 * 126.59196 * 179.74461 * 21 5 4 38 38 H 1.08995 * 109.46936 * 204.99997 * 23 22 3 39 39 H 1.09003 * 109.46813 * 324.99636 * 23 22 3 40 40 H 1.09002 * 115.55040 * 29.33143 * 24 23 22 41 41 H 1.08998 * 117.49920 * 0.02562 * 25 24 23 42 42 H 1.09001 * 117.49272 * 145.01943 * 25 24 23 43 43 H 1.09003 * 117.49919 * 252.51339 * 26 25 24 44 44 H 1.08989 * 117.51897 * 107.48299 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2913 2.1359 -1.0605 5 6 2.7161 3.3505 -0.6820 6 16 3.1833 4.6657 -1.7576 7 8 2.0037 5.4174 -2.0080 8 8 4.3645 5.2330 -1.2080 9 7 3.6199 3.9853 -3.2028 10 6 2.6191 3.2932 -4.0187 11 1 1.8061 2.9473 -3.3804 12 6 3.2679 2.0942 -4.7132 13 6 2.0746 4.2406 -5.0565 14 1 2.4380 5.2566 -5.1039 15 6 1.1125 3.8105 -5.9455 16 7 0.6696 2.5735 -5.8875 17 14 0.4370 4.9851 -7.2314 18 1 1.0943 6.3088 -7.0866 19 1 0.7084 4.4439 -8.5873 20 1 -1.0281 5.1361 -7.0429 21 6 2.7284 3.3868 0.6642 22 7 2.2947 2.1629 1.0973 23 6 2.1435 1.7375 2.4910 24 6 3.4055 0.9970 2.9379 25 6 3.2620 -0.4783 3.3172 26 6 3.4931 0.5722 4.4052 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 4.5383 4.0451 -3.5092 33 1 2.5020 1.5148 -5.2288 34 1 4.0041 2.4472 -5.4353 35 1 3.7596 1.4663 -3.9702 36 1 -0.0075 2.2710 -6.5127 37 1 3.0241 4.2210 1.2830 38 1 1.9922 2.6122 3.1234 39 1 1.2831 1.0738 2.5770 40 1 4.3291 1.3031 2.4466 41 1 2.2686 -0.9215 3.2478 42 1 4.0913 -1.1431 3.0752 43 1 4.4744 0.5986 4.8791 44 1 2.6519 0.8206 5.0521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595313205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:28 Heat of formation + Delta-G solvation = 2.798202 kcal Electronic energy + Delta-G solvation = -26647.358413 eV Core-core repulsion = 22921.548979 eV Total energy + Delta-G solvation = -3725.809435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17557 -38.04185 -36.37743 -35.17755 -35.03266 -33.89603 -33.60821 -31.92334 -28.94043 -28.07923 -27.53447 -24.96930 -23.96400 -22.93247 -22.22644 -21.35187 -20.71243 -19.90314 -18.62871 -17.69860 -16.65534 -16.20652 -16.01334 -15.70364 -15.45626 -15.12053 -14.60660 -14.50453 -14.35049 -14.08201 -13.58075 -13.32162 -13.30706 -12.64427 -12.55009 -12.12425 -12.05392 -12.02955 -11.65949 -11.37778 -11.21812 -11.20159 -11.16155 -11.10434 -10.91201 -10.80818 -10.74487 -10.61327 -10.28864 -10.07919 -9.90032 -9.75744 -9.69527 -9.42443 -8.57442 -8.26234 -7.99104 -5.87133 -3.91311 1.29368 1.78674 2.54170 2.90526 3.24366 3.41387 3.48524 3.55337 3.83836 4.10958 4.24528 4.35529 4.40312 4.49904 4.57802 4.59271 4.72390 4.81735 5.00112 5.00808 5.14536 5.22480 5.33938 5.38564 5.43316 5.44628 5.60137 5.63431 5.65899 5.74508 5.93248 6.11000 6.19910 6.42641 6.64331 7.01925 7.05969 7.10334 7.31249 7.81525 7.85625 8.00515 8.15334 8.34011 8.48095 9.10837 9.72857 11.18354 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.003831 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.982966 B = 7307.470389 C = 8210.926151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C 0.209 3.791 4 N -0.396 5.396 5 C -0.538 4.538 6 S 2.721 3.279 7 O -0.945 6.945 8 O -0.989 6.989 9 N -1.092 6.092 10 C 0.276 3.724 11 H 0.059 0.941 12 C -0.137 4.137 13 C -0.517 4.517 14 H 0.062 0.938 15 C 0.062 3.938 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.284 1.284 21 C 0.047 3.953 22 N -0.449 5.449 23 C 0.131 3.869 24 C -0.179 4.179 25 C -0.174 4.174 26 C -0.168 4.168 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.403 0.597 33 H 0.088 0.912 34 H 0.029 0.971 35 H 0.016 0.984 36 H 0.259 0.741 37 H 0.186 0.814 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -8.323 20.443 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 C -0.056 4.056 4 N -0.113 5.113 5 C -0.747 4.747 6 S 2.804 3.196 7 O -0.935 6.935 8 O -0.979 6.979 9 N -0.853 5.853 10 C 0.172 3.828 11 H 0.077 0.923 12 C -0.197 4.197 13 C -0.557 4.557 14 H 0.080 0.920 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.092 4.092 22 N -0.130 5.130 23 C 0.009 3.991 24 C -0.198 4.198 25 C -0.211 4.211 26 C -0.205 4.205 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.236 0.764 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.203 0.797 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.993 -7.913 19.967 21.685 hybrid contribution -0.011 0.203 0.298 0.361 sum 2.982 -7.710 20.265 21.886 Atomic orbital electron populations 1.21765 0.93827 1.02257 1.02870 1.19997 0.96503 0.86964 1.04178 1.23656 1.03885 0.96883 0.81153 1.70504 1.13109 1.00766 1.26897 1.33864 1.19840 1.13934 1.07105 1.01163 0.73304 0.72613 0.72481 1.93617 1.49447 1.66636 1.83789 1.93517 1.48426 1.76221 1.79762 1.55309 1.19933 1.75199 1.34857 1.18595 0.84891 0.89557 0.89758 0.92285 1.21957 1.00397 0.98680 0.98665 1.21632 1.21410 0.97913 1.14775 0.92020 1.24872 0.96262 0.95219 0.97587 1.69909 1.30109 1.15628 1.37562 0.86501 0.78855 0.81379 0.81037 1.19717 1.21238 1.21063 1.22404 1.02241 0.89683 0.94873 1.45592 1.48565 1.11486 1.07381 1.21515 0.97475 1.00735 0.79389 1.22666 0.99551 0.98165 0.99389 1.23114 1.03605 0.91366 1.02986 1.22975 1.03686 1.03191 0.90671 0.91579 0.93299 0.90980 0.88189 0.90497 0.76416 0.89295 0.95156 0.96534 0.93124 0.79733 0.88275 0.88510 0.86860 0.88276 0.88302 0.88228 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.04 -0.43 6.09 -27.89 -0.17 -0.60 16 3 C 0.21 3.19 7.16 -155.42 -1.11 2.08 16 4 N -0.40 -7.75 10.14 -10.02 -0.10 -7.85 16 5 C -0.54 -10.29 6.99 -17.81 -0.12 -10.41 16 6 S 2.72 57.91 5.77 -107.50 -0.62 57.29 16 7 O -0.95 -23.69 17.76 -57.17 -1.02 -24.70 16 8 O -0.99 -20.81 18.00 -57.17 -1.03 -21.84 16 9 N -1.09 -24.20 5.45 -5.88 -0.03 -24.23 16 10 C 0.28 7.11 2.65 -69.08 -0.18 6.93 16 11 H 0.06 1.65 6.92 -51.93 -0.36 1.29 16 12 C -0.14 -3.32 9.13 37.16 0.34 -2.98 16 13 C -0.52 -14.87 8.84 -34.44 -0.30 -15.17 16 14 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 15 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 16 N -0.89 -25.82 11.40 55.43 0.63 -25.19 16 17 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 18 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 21 C 0.05 0.71 11.48 -16.56 -0.19 0.52 16 22 N -0.45 -5.78 2.75 -113.91 -0.31 -6.10 16 23 C 0.13 1.06 5.96 -4.04 -0.02 1.03 16 24 C -0.18 -1.30 6.01 -90.62 -0.54 -1.85 16 25 C -0.17 -1.02 9.68 -26.73 -0.26 -1.28 16 26 C -0.17 -0.89 10.25 -26.73 -0.27 -1.16 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 0.65 7.33 -51.93 -0.38 0.27 16 32 H 0.40 7.86 8.84 -34.47 -0.30 7.55 16 33 H 0.09 2.34 6.27 -51.93 -0.33 2.01 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.19 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.10 0.63 8.13 -51.93 -0.42 0.21 16 39 H 0.10 0.63 7.65 -51.93 -0.40 0.24 16 40 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.10 0.49 8.03 -51.93 -0.42 0.07 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.41 8.14 -51.94 -0.42 -0.01 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -36.46 380.32 -11.14 -47.61 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.80 Total: 4.41 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -2.57 Total: -22.44 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.18 Total: -63.37 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -2.04 Total: -46.54 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 57.91 SS G_CDS: -0.62 Total: 57.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.46 -11.14 -47.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595313205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.405 kcal (2) G-P(sol) polarization free energy of solvation -36.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds