Wall clock time and date at job start Tue Mar 31 2020 16:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47506 * 2 1 4 4 N 1.30504 * 125.64482 * 269.69100 * 3 2 1 5 5 C 1.34127 * 109.25120 * 179.88912 * 4 3 2 6 6 S 1.76208 * 125.98644 * 180.11379 * 5 4 3 7 7 O 1.42097 * 106.39835 * 90.04146 * 6 5 4 8 8 O 1.42101 * 106.39838 * 222.96123 * 6 5 4 9 9 N 1.65594 * 107.21690 * 336.49792 * 6 5 4 10 10 C 1.46506 * 120.00096 * 65.59941 * 9 6 5 11 11 H 1.09002 * 109.46647 * 335.67327 * 10 9 6 12 12 C 1.53002 * 109.46950 * 215.67566 * 10 9 6 13 13 C 1.50698 * 109.47490 * 95.67282 * 10 9 6 14 14 H 1.08009 * 119.99914 * 0.02562 * 13 10 9 15 15 C 1.37873 * 120.00276 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99827 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00234 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46865 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.46920 * 120.00081 * 17 15 13 20 20 H 1.48493 * 109.47243 * 240.00275 * 17 15 13 21 21 C 1.34672 * 108.02377 * 0.37167 * 5 4 3 22 22 N 1.35039 * 125.65207 * 89.99311 * 3 2 1 23 23 C 1.46500 * 126.39977 * 359.97438 * 22 3 2 24 24 C 1.52998 * 109.47142 * 84.99529 * 23 22 3 25 25 C 1.53002 * 117.50025 * 243.62299 * 24 23 22 26 26 C 1.53000 * 59.99973 * 252.51192 * 25 24 23 27 27 H 1.08999 * 109.47684 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47130 * 300.00520 * 1 2 3 29 29 H 1.09001 * 109.46891 * 60.00375 * 1 2 3 30 30 H 1.09003 * 109.47130 * 239.99480 * 2 1 3 31 31 H 1.09001 * 109.46891 * 119.99624 * 2 1 3 32 32 H 0.96996 * 120.00256 * 245.59042 * 9 6 5 33 33 H 1.09004 * 109.46720 * 173.64701 * 12 10 9 34 34 H 1.08995 * 109.47019 * 293.64530 * 12 10 9 35 35 H 1.08996 * 109.47009 * 53.65327 * 12 10 9 36 36 H 0.97002 * 119.99817 * 179.97438 * 16 15 13 37 37 H 1.07999 * 126.59196 * 179.74461 * 21 5 4 38 38 H 1.08995 * 109.46936 * 204.99997 * 23 22 3 39 39 H 1.09003 * 109.46813 * 324.99636 * 23 22 3 40 40 H 1.09002 * 115.55040 * 29.33143 * 24 23 22 41 41 H 1.08998 * 117.49920 * 0.02562 * 25 24 23 42 42 H 1.09001 * 117.49272 * 145.01943 * 25 24 23 43 43 H 1.09003 * 117.49919 * 252.51339 * 26 25 24 44 44 H 1.08989 * 117.51897 * 107.48299 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2913 2.1359 -1.0605 5 6 2.7161 3.3505 -0.6820 6 16 3.1833 4.6657 -1.7576 7 8 2.0037 5.4174 -2.0080 8 8 4.3645 5.2330 -1.2080 9 7 3.6199 3.9853 -3.2028 10 6 2.6191 3.2932 -4.0187 11 1 1.8061 2.9473 -3.3804 12 6 3.2679 2.0942 -4.7132 13 6 2.0746 4.2406 -5.0565 14 1 2.4380 5.2566 -5.1039 15 6 1.1125 3.8105 -5.9455 16 7 0.6696 2.5735 -5.8875 17 14 0.4370 4.9851 -7.2314 18 1 1.0943 6.3088 -7.0866 19 1 0.7084 4.4439 -8.5873 20 1 -1.0281 5.1361 -7.0429 21 6 2.7284 3.3868 0.6642 22 7 2.2947 2.1629 1.0973 23 6 2.1435 1.7375 2.4910 24 6 3.4055 0.9970 2.9379 25 6 3.2620 -0.4783 3.3172 26 6 3.4931 0.5722 4.4052 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 4.5383 4.0451 -3.5092 33 1 2.5020 1.5148 -5.2288 34 1 4.0041 2.4472 -5.4353 35 1 3.7596 1.4663 -3.9702 36 1 -0.0075 2.2710 -6.5127 37 1 3.0241 4.2210 1.2830 38 1 1.9922 2.6122 3.1234 39 1 1.2831 1.0738 2.5770 40 1 4.3291 1.3031 2.4466 41 1 2.2686 -0.9215 3.2478 42 1 4.0913 -1.1431 3.0752 43 1 4.4744 0.5986 4.8791 44 1 2.6519 0.8206 5.0521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595313205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:27 Heat of formation + Delta-G solvation = -22.873405 kcal Electronic energy + Delta-G solvation = -26648.471618 eV Core-core repulsion = 22921.548979 eV Total energy + Delta-G solvation = -3726.922639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.32282 -38.57946 -38.13886 -37.14230 -36.83054 -34.86649 -34.59495 -34.02024 -30.20626 -29.94420 -28.34740 -27.13627 -24.95346 -23.57089 -23.16235 -22.73889 -22.04630 -20.90648 -20.20943 -18.98556 -18.61523 -17.89380 -17.18906 -17.06374 -16.79304 -16.31273 -16.18371 -15.46706 -15.39194 -15.21003 -14.96741 -14.70427 -14.54258 -13.96457 -13.94899 -13.40274 -13.18849 -13.17143 -13.02656 -12.94231 -12.81464 -12.74504 -12.67942 -12.40855 -12.38819 -12.24889 -12.06162 -12.03718 -11.90843 -11.53250 -11.43583 -11.23573 -10.91596 -10.80691 -10.43661 -9.95570 -9.81144 -8.04647 -6.16604 -0.35265 0.59909 1.42124 1.44326 1.56395 1.59564 1.64146 2.18804 2.49353 2.78259 2.79524 3.22389 3.40463 3.50374 3.66923 3.74773 3.88201 3.97225 4.06063 4.11251 4.25642 4.30299 4.32604 4.51681 4.57059 4.72814 4.79168 4.93947 4.95479 5.00811 5.00949 5.08611 5.13455 5.14957 5.21060 5.24519 5.29022 5.35634 5.68683 5.83047 6.06858 6.07158 6.34287 6.51792 6.80993 6.89999 7.50489 8.99360 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.003831 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.982966 B = 7307.470389 C = 8210.926151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.036 4.036 3 C 0.210 3.790 4 N -0.451 5.451 5 C -0.578 4.578 6 S 2.739 3.261 7 O -0.993 6.993 8 O -0.991 6.991 9 N -1.096 6.096 10 C 0.284 3.716 11 H 0.034 0.966 12 C -0.124 4.124 13 C -0.544 4.544 14 H 0.049 0.951 15 C 0.017 3.983 16 N -0.912 5.912 17 Si 0.951 3.049 18 H -0.274 1.274 19 H -0.271 1.271 20 H -0.282 1.282 21 C 0.065 3.935 22 N -0.437 5.437 23 C 0.124 3.876 24 C -0.193 4.193 25 C -0.173 4.173 26 C -0.152 4.152 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.413 0.587 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.263 0.737 37 H 0.219 0.781 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 -9.499 22.874 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.057 4.057 4 N -0.168 5.168 5 C -0.791 4.791 6 S 2.827 3.173 7 O -0.983 6.983 8 O -0.981 6.981 9 N -0.856 5.856 10 C 0.179 3.821 11 H 0.052 0.948 12 C -0.183 4.183 13 C -0.583 4.583 14 H 0.067 0.933 15 C -0.182 4.182 16 N -0.551 5.551 17 Si 0.777 3.223 18 H -0.199 1.199 19 H -0.197 1.197 20 H -0.207 1.207 21 C -0.078 4.078 22 N -0.116 5.116 23 C 0.003 3.997 24 C -0.212 4.212 25 C -0.210 4.210 26 C -0.190 4.190 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.247 0.753 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.236 0.764 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.845 -9.069 22.385 24.319 hybrid contribution 0.063 0.485 -0.284 0.565 sum 2.907 -8.584 22.101 23.887 Atomic orbital electron populations 1.21735 0.93193 1.03679 1.01634 1.20187 0.96894 0.84941 1.05473 1.24261 1.02503 0.97899 0.81005 1.70390 1.15284 1.01512 1.29633 1.33119 1.23812 1.13849 1.08292 1.00168 0.72338 0.72601 0.72181 1.93552 1.51119 1.68992 1.84634 1.93499 1.48170 1.76907 1.79552 1.55090 1.19878 1.74946 1.35717 1.18247 0.85118 0.89688 0.89019 0.94823 1.21756 0.99705 0.98034 0.98848 1.21930 1.22368 0.97955 1.16081 0.93291 1.25595 0.96458 0.96790 0.99381 1.70010 1.30260 1.16690 1.38141 0.85623 0.78079 0.79392 0.79253 1.19872 1.19666 1.20745 1.22905 0.99887 0.91156 0.93827 1.45846 1.46612 1.10181 1.08969 1.21984 0.98711 1.02352 0.76610 1.22506 0.98208 0.99412 1.01120 1.23234 1.04389 0.90590 1.02786 1.23067 1.04544 1.01675 0.89697 0.88829 0.91816 0.94879 0.89280 0.86749 0.75260 0.91503 0.94657 0.94615 0.92792 0.76429 0.86074 0.86268 0.89086 0.86771 0.88599 0.88038 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.89 71.98 0.71 -2.14 16 2 C -0.04 -0.76 6.09 29.85 0.18 -0.58 16 3 C 0.21 6.22 7.16 138.13 0.99 7.21 16 4 N -0.45 -17.98 10.14 -185.62 -1.88 -19.87 16 5 C -0.58 -22.42 6.99 83.52 0.58 -21.84 16 6 S 2.74 120.25 5.77 -56.49 -0.33 119.92 16 7 O -0.99 -51.98 17.76 -128.00 -2.27 -54.25 16 8 O -0.99 -42.10 18.00 -128.00 -2.30 -44.41 16 9 N -1.10 -50.25 5.45 -172.51 -0.94 -51.19 16 10 C 0.28 15.19 2.65 44.24 0.12 15.31 16 11 H 0.03 1.99 6.92 -2.39 -0.02 1.97 16 12 C -0.12 -6.12 9.13 71.98 0.66 -5.46 16 13 C -0.54 -32.19 8.84 25.60 0.23 -31.96 16 14 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 15 C 0.02 1.00 5.30 84.65 0.45 1.45 16 16 N -0.91 -53.76 11.40 21.45 0.24 -53.52 16 17 Si 0.95 46.35 29.54 68.60 2.03 48.37 16 18 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 21 C 0.06 1.87 11.48 83.09 0.95 2.83 16 22 N -0.44 -10.36 2.75 -514.29 -1.41 -11.77 16 23 C 0.12 1.54 5.96 86.38 0.51 2.05 16 24 C -0.19 -2.24 6.01 -10.79 -0.06 -2.31 16 25 C -0.17 -1.42 9.68 30.59 0.30 -1.13 16 26 C -0.15 -1.06 10.25 30.59 0.31 -0.75 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.11 1.52 7.33 -2.39 -0.02 1.51 16 32 H 0.41 16.60 8.84 -96.75 -0.86 15.74 16 33 H 0.07 3.60 6.27 -2.38 -0.01 3.59 16 34 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.22 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.12 1.02 8.13 -2.39 -0.02 1.00 16 39 H 0.12 1.00 7.65 -2.39 -0.02 0.98 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.11 0.61 8.03 -2.39 -0.02 0.59 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -81.90 380.32 -0.79 -82.69 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.15 Total: 21.34 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 5.93 Total: -37.31 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -3.99 Total: -136.35 kcal Atomic # 8 Polarization: -94.08 SS G_CDS: -4.58 Total: -98.66 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 16 Polarization: 120.25 SS G_CDS: -0.33 Total: 119.92 kcal Total: -81.90 -0.79 -82.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595313205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.819 kcal (2) G-P(sol) polarization free energy of solvation -81.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds