Wall clock time and date at job start Tue Mar 31 2020 16:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46824 * 2 1 4 4 N 1.30496 * 125.65380 * 89.97844 * 3 2 1 5 5 C 1.34130 * 109.26014 * 180.02562 * 4 3 2 6 6 S 1.76197 * 125.99080 * 179.97438 * 5 4 3 7 7 O 1.42104 * 106.40458 * 83.53804 * 6 5 4 8 8 O 1.42097 * 106.39972 * 216.45361 * 6 5 4 9 9 N 1.65600 * 107.21851 * 329.99730 * 6 5 4 10 10 C 1.46497 * 120.00419 * 64.99946 * 9 6 5 11 11 C 1.52995 * 109.47263 * 165.00140 * 10 9 6 12 12 C 1.50704 * 109.46895 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00040 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99675 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99759 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47216 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46917 * 120.00246 * 16 14 12 19 19 H 1.48497 * 109.47044 * 240.00258 * 16 14 12 20 20 C 1.34674 * 108.01710 * 359.97438 * 5 4 3 21 21 N 1.35054 * 125.64688 * 270.28764 * 3 2 1 22 22 C 1.46496 * 126.39961 * 359.97438 * 21 3 2 23 23 C 1.53001 * 109.46973 * 85.14741 * 22 21 3 24 24 C 1.53007 * 117.49689 * 243.62279 * 23 22 21 25 25 C 1.52999 * 59.99881 * 252.51422 * 24 23 22 26 26 H 1.09002 * 109.47219 * 59.99971 * 1 2 3 27 27 H 1.09003 * 109.46928 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46853 * 300.00185 * 1 2 3 29 29 H 1.08996 * 109.47125 * 239.99853 * 2 1 3 30 30 H 1.09002 * 109.46808 * 119.99372 * 2 1 3 31 31 H 0.97008 * 119.99686 * 245.00073 * 9 6 5 32 32 H 1.09001 * 109.47203 * 285.00513 * 10 9 6 33 33 H 1.09007 * 109.46898 * 44.99971 * 10 9 6 34 34 H 1.09003 * 109.47036 * 299.99837 * 11 10 9 35 35 H 1.08997 * 109.47228 * 60.00167 * 11 10 9 36 36 H 0.97003 * 119.99983 * 180.02562 * 15 14 12 37 37 H 1.08002 * 126.58669 * 179.97438 * 20 5 4 38 38 H 1.09001 * 109.47200 * 205.15089 * 22 21 3 39 39 H 1.09002 * 109.47024 * 325.14755 * 22 21 3 40 40 H 1.08996 * 115.54864 * 29.33156 * 23 22 21 41 41 H 1.08996 * 117.49874 * 0.02562 * 24 23 22 42 42 H 1.08998 * 117.49455 * 145.02237 * 24 23 22 43 43 H 1.09008 * 117.49844 * 252.51867 * 25 24 23 44 44 H 1.08998 * 117.52463 * 107.48266 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2854 2.1381 1.0603 5 6 2.7139 3.3515 0.6818 6 16 3.1779 4.6678 1.7572 7 8 4.5296 4.4285 2.1244 8 8 2.7429 5.8680 1.1331 9 7 2.2823 4.5090 3.1411 10 6 2.4703 3.3413 4.0054 11 6 1.8251 3.6056 5.3673 12 6 2.0192 2.4046 6.2566 13 1 2.5500 1.5395 5.8876 14 6 1.5199 2.4106 7.5419 15 7 0.8740 3.4643 7.9914 16 14 1.7610 0.9222 8.6445 17 1 2.5152 -0.1232 7.9071 18 1 2.5235 1.3211 9.8547 19 1 0.4366 0.3856 9.0484 20 6 2.7273 3.3872 -0.6644 21 7 2.2894 2.1648 -1.0975 22 6 2.1328 1.7412 -2.4911 23 6 0.6845 1.9627 -2.9318 24 6 -0.1359 0.7276 -3.3093 25 6 0.3427 1.6902 -4.3980 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6331 5.1893 3.3793 32 1 2.0042 2.4699 3.5455 33 1 3.5362 3.1555 4.1382 34 1 2.2914 4.4770 5.8272 35 1 0.7593 3.7914 5.2345 36 1 0.5231 3.4687 8.8957 37 1 3.0218 4.2219 -1.2833 38 1 2.7992 2.3256 -3.1255 39 1 2.3818 0.6837 -2.5795 40 1 0.1628 2.7820 -2.4372 41 1 0.3561 -0.2428 -3.2433 42 1 -1.1976 0.7341 -3.0629 43 1 -0.4043 2.3301 -4.8679 44 1 1.1497 1.3536 -5.0487 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595323041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:19 Heat of formation + Delta-G solvation = -6.124593 kcal Electronic energy + Delta-G solvation = -25955.710188 eV Core-core repulsion = 22229.513832 eV Total energy + Delta-G solvation = -3726.196356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.42595 -38.17748 -36.79289 -35.48624 -35.16293 -34.03156 -33.85553 -32.59691 -29.21176 -28.91706 -27.70766 -24.32018 -24.17701 -23.06088 -22.43924 -21.56937 -20.92531 -19.97641 -19.00915 -18.06116 -16.90169 -16.27863 -16.15584 -16.07325 -15.61074 -15.37522 -14.76655 -14.67969 -14.49873 -14.32705 -13.82926 -13.69836 -13.54193 -13.37051 -12.63677 -12.42808 -12.32829 -12.13215 -11.84648 -11.76399 -11.71145 -11.57814 -11.49830 -11.26920 -11.08644 -11.02477 -10.98937 -10.67799 -10.49347 -10.36268 -10.14908 -9.98765 -9.40077 -9.11547 -8.84109 -8.63542 -8.27064 -5.96550 -3.98204 0.86700 1.54449 2.33110 2.62004 3.14039 3.35770 3.39281 3.43461 3.48740 3.96227 4.00946 4.16256 4.22165 4.30410 4.43133 4.50575 4.52995 4.66467 4.81040 4.87690 5.01199 5.06866 5.07452 5.27437 5.29495 5.31634 5.40286 5.51711 5.54801 5.61450 5.76479 5.89654 6.03248 6.06375 6.19369 6.57306 6.78774 6.85639 7.00836 7.63461 7.72684 7.74121 7.84066 8.04682 8.44254 9.08376 9.65304 11.15234 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.003366 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.653981 B = 8315.494881 C = 9789.484433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.036 4.036 3 C 0.215 3.785 4 N -0.406 5.406 5 C -0.544 4.544 6 S 2.727 3.273 7 O -0.958 6.958 8 O -0.975 6.975 9 N -1.101 6.101 10 C 0.121 3.879 11 C 0.017 3.983 12 C -0.516 4.516 13 H 0.060 0.940 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.055 3.945 21 N -0.447 5.447 22 C 0.131 3.869 23 C -0.180 4.180 24 C -0.171 4.171 25 C -0.168 4.168 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.415 0.585 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.260 0.740 37 H 0.189 0.811 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 -5.717 -27.048 27.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.076 4.076 3 C -0.050 4.050 4 N -0.123 5.123 5 C -0.754 4.754 6 S 2.811 3.189 7 O -0.947 6.947 8 O -0.965 6.965 9 N -0.863 5.863 10 C -0.003 4.003 11 C -0.022 4.022 12 C -0.555 4.555 13 H 0.078 0.922 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.085 4.085 21 N -0.128 5.128 22 C 0.009 3.991 23 C -0.198 4.198 24 C -0.208 4.208 25 C -0.205 4.205 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.249 0.751 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.206 0.794 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.747 -5.506 -26.465 27.042 hybrid contribution -0.545 -0.723 -0.371 0.978 sum -1.292 -6.230 -26.835 27.579 Atomic orbital electron populations 1.21849 0.93580 1.02468 1.03204 1.19995 0.96813 0.86661 1.04082 1.23663 1.03338 0.96942 0.81091 1.70415 1.13870 1.00706 1.27292 1.33638 1.20988 1.13652 1.07162 1.00985 0.73734 0.71853 0.72346 1.93589 1.33274 1.85816 1.82034 1.93558 1.83038 1.42905 1.76967 1.55221 1.58404 1.34474 1.38247 1.21688 1.01042 0.84954 0.92627 1.19298 0.96108 0.97752 0.89011 1.21164 1.35622 1.01224 0.97491 0.92158 1.25003 0.95225 0.96161 0.98058 1.69977 1.37540 1.28802 1.17137 0.86498 0.77754 0.82967 0.80559 1.19599 1.21059 1.21110 1.22459 1.01762 0.89486 0.94786 1.45621 1.47960 1.11595 1.07618 1.21545 0.96233 1.02271 0.79074 1.22649 0.95626 1.01994 0.99569 1.23115 1.00746 0.94186 1.02730 1.22999 1.03705 1.03200 0.90599 0.92248 0.91584 0.91398 0.90678 0.88136 0.75056 0.91365 0.91818 0.95866 0.95956 0.93063 0.79425 0.88149 0.88431 0.86860 0.88257 0.88220 0.88182 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.16 0.37 -0.96 16 2 C -0.04 -0.35 6.24 -27.88 -0.17 -0.52 16 3 C 0.21 2.78 7.16 -155.41 -1.11 1.67 16 4 N -0.41 -6.78 10.17 -10.02 -0.10 -6.88 16 5 C -0.54 -8.76 7.06 -17.81 -0.13 -8.88 16 6 S 2.73 48.18 5.87 -107.50 -0.63 47.55 16 7 O -0.96 -19.78 17.49 -57.17 -1.00 -20.78 16 8 O -0.97 -17.63 17.95 -57.17 -1.03 -18.66 16 9 N -1.10 -20.74 6.00 -10.61 -0.06 -20.80 16 10 C 0.12 2.67 6.00 -4.05 -0.02 2.65 16 11 C 0.02 0.45 5.11 -27.88 -0.14 0.30 16 12 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 13 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.05 0.69 11.43 -16.56 -0.19 0.50 16 21 N -0.45 -4.78 2.75 -113.90 -0.31 -5.09 16 22 C 0.13 0.81 6.17 -4.04 -0.02 0.79 16 23 C -0.18 -1.05 5.60 -90.62 -0.51 -1.56 16 24 C -0.17 -0.80 8.37 -26.73 -0.22 -1.02 16 25 C -0.17 -0.70 10.25 -26.73 -0.27 -0.97 16 26 H 0.06 0.46 5.71 -51.93 -0.30 0.17 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.49 7.18 -51.93 -0.37 0.12 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.41 7.15 8.65 -34.47 -0.30 6.86 16 32 H 0.07 1.48 7.21 -51.93 -0.37 1.10 16 33 H 0.06 1.44 7.75 -51.92 -0.40 1.04 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.19 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.45 6.94 -51.93 -0.36 0.09 16 40 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.38 8.03 -51.93 -0.42 -0.04 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 379.22 15.07 5.71 5.71 Total: -1.00 -36.92 379.22 -11.26 -48.18 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.71 Total: 1.68 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -2.84 Total: -21.49 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.26 Total: -58.99 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -2.03 Total: -39.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 48.18 SS G_CDS: -0.63 Total: 47.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.92 -11.26 -48.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595323041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.059 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds