Wall clock time and date at job start Tue Mar 31 2020 16:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46824 * 2 1 4 4 N 1.30496 * 125.65380 * 89.97844 * 3 2 1 5 5 C 1.34130 * 109.26014 * 180.02562 * 4 3 2 6 6 S 1.76197 * 125.99080 * 179.97438 * 5 4 3 7 7 O 1.42104 * 106.40458 * 83.53804 * 6 5 4 8 8 O 1.42097 * 106.39972 * 216.45361 * 6 5 4 9 9 N 1.65600 * 107.21851 * 329.99730 * 6 5 4 10 10 C 1.46497 * 120.00419 * 64.99946 * 9 6 5 11 11 C 1.52995 * 109.47263 * 165.00140 * 10 9 6 12 12 C 1.50704 * 109.46895 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00040 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99675 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99759 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47216 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46917 * 120.00246 * 16 14 12 19 19 H 1.48497 * 109.47044 * 240.00258 * 16 14 12 20 20 C 1.34674 * 108.01710 * 359.97438 * 5 4 3 21 21 N 1.35054 * 125.64688 * 270.28764 * 3 2 1 22 22 C 1.46496 * 126.39961 * 359.97438 * 21 3 2 23 23 C 1.53001 * 109.46973 * 85.14741 * 22 21 3 24 24 C 1.53007 * 117.49689 * 243.62279 * 23 22 21 25 25 C 1.52999 * 59.99881 * 252.51422 * 24 23 22 26 26 H 1.09002 * 109.47219 * 59.99971 * 1 2 3 27 27 H 1.09003 * 109.46928 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46853 * 300.00185 * 1 2 3 29 29 H 1.08996 * 109.47125 * 239.99853 * 2 1 3 30 30 H 1.09002 * 109.46808 * 119.99372 * 2 1 3 31 31 H 0.97008 * 119.99686 * 245.00073 * 9 6 5 32 32 H 1.09001 * 109.47203 * 285.00513 * 10 9 6 33 33 H 1.09007 * 109.46898 * 44.99971 * 10 9 6 34 34 H 1.09003 * 109.47036 * 299.99837 * 11 10 9 35 35 H 1.08997 * 109.47228 * 60.00167 * 11 10 9 36 36 H 0.97003 * 119.99983 * 180.02562 * 15 14 12 37 37 H 1.08002 * 126.58669 * 179.97438 * 20 5 4 38 38 H 1.09001 * 109.47200 * 205.15089 * 22 21 3 39 39 H 1.09002 * 109.47024 * 325.14755 * 22 21 3 40 40 H 1.08996 * 115.54864 * 29.33156 * 23 22 21 41 41 H 1.08996 * 117.49874 * 0.02562 * 24 23 22 42 42 H 1.08998 * 117.49455 * 145.02237 * 24 23 22 43 43 H 1.09008 * 117.49844 * 252.51867 * 25 24 23 44 44 H 1.08998 * 117.52463 * 107.48266 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2854 2.1381 1.0603 5 6 2.7139 3.3515 0.6818 6 16 3.1779 4.6678 1.7572 7 8 4.5296 4.4285 2.1244 8 8 2.7429 5.8680 1.1331 9 7 2.2823 4.5090 3.1411 10 6 2.4703 3.3413 4.0054 11 6 1.8251 3.6056 5.3673 12 6 2.0192 2.4046 6.2566 13 1 2.5500 1.5395 5.8876 14 6 1.5199 2.4106 7.5419 15 7 0.8740 3.4643 7.9914 16 14 1.7610 0.9222 8.6445 17 1 2.5152 -0.1232 7.9071 18 1 2.5235 1.3211 9.8547 19 1 0.4366 0.3856 9.0484 20 6 2.7273 3.3872 -0.6644 21 7 2.2894 2.1648 -1.0975 22 6 2.1328 1.7412 -2.4911 23 6 0.6845 1.9627 -2.9318 24 6 -0.1359 0.7276 -3.3093 25 6 0.3427 1.6902 -4.3980 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6331 5.1893 3.3793 32 1 2.0042 2.4699 3.5455 33 1 3.5362 3.1555 4.1382 34 1 2.2914 4.4770 5.8272 35 1 0.7593 3.7914 5.2345 36 1 0.5231 3.4687 8.8957 37 1 3.0218 4.2219 -1.2833 38 1 2.7992 2.3256 -3.1255 39 1 2.3818 0.6837 -2.5795 40 1 0.1628 2.7820 -2.4372 41 1 0.3561 -0.2428 -3.2433 42 1 -1.1976 0.7341 -3.0629 43 1 -0.4043 2.3301 -4.8679 44 1 1.1497 1.3536 -5.0487 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595323041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:18 Heat of formation + Delta-G solvation = -32.093272 kcal Electronic energy + Delta-G solvation = -25956.836274 eV Core-core repulsion = 22229.513832 eV Total energy + Delta-G solvation = -3727.322443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.37295 -38.60495 -38.29021 -37.00206 -36.96407 -34.82368 -34.75101 -34.60404 -30.98678 -30.11668 -28.35795 -26.38755 -24.99370 -23.66884 -23.15611 -22.87756 -22.13780 -20.79807 -20.37512 -19.18080 -18.53331 -18.04743 -17.26334 -17.15514 -16.67013 -16.43213 -16.17765 -15.63938 -15.58762 -15.32988 -15.30053 -15.00616 -14.50659 -14.39186 -13.94304 -13.40045 -13.36523 -13.31408 -13.22363 -13.14537 -12.98050 -12.87003 -12.73789 -12.47769 -12.39061 -12.34593 -12.29582 -12.04012 -11.55411 -11.47352 -11.28775 -11.25805 -10.96216 -10.83764 -10.59207 -10.22169 -9.85877 -8.18026 -6.28295 -0.53375 0.55961 1.43508 1.44477 1.52791 1.58319 1.59133 1.99145 2.45448 2.65740 2.78635 3.16258 3.33822 3.46317 3.64190 3.72508 3.75662 3.96607 4.03518 4.08993 4.24055 4.28497 4.33359 4.34856 4.48762 4.62379 4.68076 4.79745 4.92549 4.94564 4.96085 5.01064 5.02744 5.09894 5.15048 5.22285 5.25308 5.35927 5.53597 5.68978 5.84825 6.01649 6.07997 6.28341 6.73456 6.86482 7.40174 8.94609 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.003366 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.653981 B = 8315.494881 C = 9789.484433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C 0.214 3.786 4 N -0.457 5.457 5 C -0.581 4.581 6 S 2.749 3.251 7 O -0.992 6.992 8 O -0.980 6.980 9 N -1.106 6.106 10 C 0.143 3.857 11 C 0.022 3.978 12 C -0.540 4.540 13 H 0.064 0.936 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.261 1.261 18 H -0.279 1.279 19 H -0.276 1.276 20 C 0.071 3.929 21 N -0.437 5.437 22 C 0.124 3.876 23 C -0.192 4.192 24 C -0.171 4.171 25 C -0.154 4.154 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.034 0.966 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.420 0.580 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.000 1.000 35 H 0.006 0.994 36 H 0.264 0.736 37 H 0.221 0.779 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -7.922 -29.641 30.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 C -0.052 4.052 4 N -0.175 5.175 5 C -0.793 4.793 6 S 2.837 3.163 7 O -0.982 6.982 8 O -0.970 6.970 9 N -0.867 5.867 10 C 0.017 3.983 11 C -0.017 4.017 12 C -0.579 4.579 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.185 1.185 18 H -0.205 1.205 19 H -0.202 1.202 20 C -0.072 4.072 21 N -0.116 5.116 22 C 0.004 3.996 23 C -0.211 4.211 24 C -0.208 4.208 25 C -0.192 4.192 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.054 0.946 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.255 0.745 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.018 0.982 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.238 0.762 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.664 -7.682 -29.058 30.064 hybrid contribution -0.630 -0.032 0.281 0.691 sum -1.295 -7.714 -28.777 29.821 Atomic orbital electron populations 1.21811 0.93109 1.03575 1.02066 1.20189 0.97091 0.84873 1.05442 1.24224 1.02101 0.97912 0.81010 1.70304 1.15923 1.01447 1.29793 1.33002 1.24559 1.13522 1.08262 0.99977 0.72563 0.71957 0.71780 1.93539 1.35403 1.86530 1.82751 1.93539 1.82945 1.43836 1.76722 1.55103 1.58689 1.33828 1.39101 1.21227 0.99881 0.86120 0.91061 1.19160 0.95152 0.96375 0.90970 1.21566 1.35897 1.01997 0.98417 0.91792 1.25950 0.94660 0.99394 0.99642 1.70100 1.38316 1.30967 1.17786 0.85360 0.78076 0.79104 0.78271 1.18487 1.20500 1.20177 1.22966 0.99546 0.90811 0.93884 1.45867 1.46202 1.10446 1.09051 1.21990 0.96953 1.04109 0.76560 1.22499 0.95424 1.02149 1.00995 1.23213 1.00469 0.94469 1.02600 1.23076 1.03873 1.02419 0.89797 0.91268 0.89328 0.94631 0.86889 0.89164 0.74484 0.91016 0.92707 0.98164 0.97541 0.92717 0.76248 0.85896 0.86051 0.89261 0.86729 0.88783 0.88290 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.89 71.98 0.71 -1.63 16 2 C -0.04 -0.63 6.24 29.85 0.19 -0.44 16 3 C 0.21 5.27 7.16 138.13 0.99 6.26 16 4 N -0.46 -15.35 10.17 -185.62 -1.89 -17.24 16 5 C -0.58 -18.69 7.06 83.52 0.59 -18.11 16 6 S 2.75 99.56 5.87 -56.49 -0.33 99.23 16 7 O -0.99 -42.20 17.49 -128.00 -2.24 -44.44 16 8 O -0.98 -35.68 17.95 -128.00 -2.30 -37.98 16 9 N -1.11 -43.55 6.00 -187.49 -1.12 -44.67 16 10 C 0.14 6.55 6.00 86.38 0.52 7.07 16 11 C 0.02 1.21 5.11 29.85 0.15 1.36 16 12 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 13 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 14 C 0.00 0.09 5.46 84.66 0.46 0.55 16 15 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 16 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 C 0.07 1.67 11.43 83.09 0.95 2.62 16 21 N -0.44 -8.33 2.75 -514.28 -1.41 -9.74 16 22 C 0.12 1.08 6.17 86.38 0.53 1.62 16 23 C -0.19 -1.73 5.60 -10.79 -0.06 -1.79 16 24 C -0.17 -1.06 8.37 30.60 0.26 -0.80 16 25 C -0.15 -0.78 10.25 30.59 0.31 -0.47 16 26 H 0.07 0.94 5.71 -2.39 -0.01 0.93 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.11 1.03 7.18 -2.39 -0.02 1.01 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.42 15.29 8.65 -96.74 -0.84 14.45 16 32 H 0.07 3.24 7.21 -2.39 -0.02 3.22 16 33 H 0.05 2.59 7.75 -2.38 -0.02 2.57 16 34 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 37 H 0.22 3.48 8.06 -2.91 -0.02 3.45 16 38 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.12 0.53 6.94 -2.39 -0.02 0.51 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.11 0.38 8.03 -2.39 -0.02 0.36 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -81.92 379.22 -0.98 -82.90 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.17 Total: 16.91 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 5.83 Total: -35.03 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -4.14 Total: -128.58 kcal Atomic # 8 Polarization: -77.88 SS G_CDS: -4.54 Total: -82.42 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 99.56 SS G_CDS: -0.33 Total: 99.23 kcal Total: -81.92 -0.98 -82.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595323041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.805 kcal (2) G-P(sol) polarization free energy of solvation -81.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds