Wall clock time and date at job start Tue Mar 31 2020 15:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30229 * 126.72525 * 2 1 4 4 O 1.20862 * 112.08889 * 180.02562 * 3 2 1 5 5 C 1.34711 * 111.54075 * 359.97438 * 4 3 2 6 6 C 1.47685 * 126.97435 * 179.97438 * 5 4 3 7 7 C 1.39646 * 120.14778 * 1.60807 * 6 5 4 8 8 C 1.37943 * 119.84592 * 179.97438 * 7 6 5 9 9 C 1.38374 * 120.15159 * 359.97438 * 8 7 6 10 10 C 1.38369 * 120.30514 * 0.02562 * 9 8 7 11 11 C 1.37942 * 120.15288 * 359.97438 * 10 9 8 12 12 C 1.37267 * 106.05887 * 0.26287 * 5 4 3 13 13 N 1.40407 * 128.12571 * 179.73795 * 12 5 4 14 14 C 1.34779 * 120.00111 * 241.02621 * 13 12 5 15 15 O 1.21606 * 119.99857 * 354.74413 * 14 13 12 16 16 N 1.34772 * 120.00019 * 174.75131 * 14 13 12 17 17 C 1.47064 * 136.05453 * 359.61854 * 16 14 13 18 18 C 1.53763 * 87.88602 * 152.96957 * 17 16 14 19 19 C 1.50695 * 114.26862 * 139.79010 * 18 17 16 20 20 H 1.07998 * 120.00564 * 266.48222 * 19 18 17 21 21 C 1.37882 * 119.99794 * 86.47471 * 19 18 17 22 22 N 1.31516 * 120.00162 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00037 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47068 * 90.00385 * 23 21 19 25 25 H 1.48504 * 109.47332 * 210.00265 * 23 21 19 26 26 H 1.48500 * 109.47391 * 330.00465 * 23 21 19 27 27 C 1.47063 * 136.05875 * 179.97438 * 16 14 13 28 28 H 1.08997 * 109.47153 * 82.14333 * 1 2 3 29 29 H 1.09004 * 109.47168 * 202.14426 * 1 2 3 30 30 H 1.09004 * 109.46845 * 322.14024 * 1 2 3 31 31 H 1.07994 * 120.07541 * 359.69840 * 7 6 5 32 32 H 1.07989 * 119.92574 * 179.97438 * 8 7 6 33 33 H 1.07996 * 119.84535 * 179.97438 * 9 8 7 34 34 H 1.07999 * 119.92237 * 180.02562 * 10 9 8 35 35 H 1.08001 * 120.08088 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99758 * 61.02451 * 13 12 5 37 37 H 1.09000 * 113.47374 * 267.70050 * 17 16 14 38 38 H 1.08998 * 113.46978 * 38.14717 * 17 16 14 39 39 H 1.08997 * 114.39418 * 272.68156 * 18 17 16 40 40 H 0.96998 * 120.00042 * 179.97438 * 22 21 19 41 41 H 1.08999 * 113.47050 * 321.86717 * 27 16 14 42 42 H 1.09008 * 113.46585 * 92.24021 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2857 1.0438 0.0000 4 8 3.4551 0.7384 -0.0005 5 6 3.6171 -0.5989 -0.0004 6 6 4.8952 -1.3389 -0.0014 7 6 6.1070 -0.6457 0.0313 8 6 7.2971 -1.3432 0.0307 9 6 7.2920 -2.7265 -0.0016 10 6 6.0949 -3.4197 -0.0341 11 6 4.8974 -2.7350 -0.0339 12 6 2.3532 -1.1345 -0.0057 13 7 1.9860 -2.4896 -0.0128 14 6 1.2663 -2.9875 -1.0379 15 8 0.8536 -2.2451 -1.9081 16 7 1.0041 -4.3081 -1.0984 17 6 1.3184 -5.4887 -0.2797 18 6 0.0338 -6.1364 -0.8225 19 6 0.1681 -7.6022 -1.1454 20 1 0.4205 -7.9134 -2.1483 21 6 -0.0312 -8.5462 -0.1604 22 7 -0.3390 -8.1674 1.0609 23 14 0.1344 -10.3632 -0.5608 24 1 1.5391 -10.7924 -0.3413 25 1 -0.7665 -11.1485 0.3206 26 1 -0.2374 -10.5934 -1.9799 27 6 0.2832 -5.2036 -2.0155 28 1 -0.3633 0.1405 -1.0180 29 1 -0.3634 -0.9519 0.3874 30 1 -0.3633 0.8114 0.6307 31 1 6.1124 0.4340 0.0524 32 1 8.2349 -0.8084 0.0554 33 1 8.2266 -3.2676 -0.0024 34 1 6.0981 -4.4994 -0.0588 35 1 3.9638 -3.2772 -0.0588 36 1 2.2502 -3.0675 0.7201 37 1 2.2282 -6.0025 -0.5900 38 1 1.2884 -5.2939 0.7924 39 1 -0.8647 -5.9014 -0.2520 40 1 -0.4795 -8.8315 1.7537 41 1 -0.6285 -4.7660 -2.4222 42 1 0.9197 -5.6414 -2.7845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596834877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:46 Heat of formation + Delta-G solvation = 102.241925 kcal Electronic energy + Delta-G solvation = -27276.728017 eV Core-core repulsion = 23419.786834 eV Total energy + Delta-G solvation = -3856.941183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.89421 -39.98939 -39.22643 -37.73756 -35.43936 -33.87986 -32.82440 -32.38629 -31.16735 -29.71260 -28.83408 -28.44154 -25.33150 -25.07164 -23.48423 -23.23290 -22.16490 -20.85617 -20.40754 -19.24168 -18.11488 -17.66623 -17.35876 -16.97704 -16.63702 -16.11228 -15.54238 -14.94875 -14.89051 -14.68883 -14.45128 -13.80449 -13.73797 -13.50706 -13.29464 -13.08839 -13.04691 -12.77073 -12.60938 -12.31618 -11.74313 -11.63651 -11.44905 -11.43160 -11.25356 -11.05489 -10.86833 -10.46204 -10.42693 -10.04322 -9.95767 -9.34398 -9.25022 -9.20664 -9.18989 -8.66462 -8.33671 -7.91018 -6.25864 -4.31730 0.42977 1.17271 1.81157 2.14066 2.54027 3.06097 3.18753 3.27316 3.30133 3.48630 3.61945 4.06415 4.25419 4.28538 4.36114 4.71737 4.75701 4.87226 4.99087 5.03950 5.09165 5.23794 5.33421 5.54076 5.63138 5.65505 5.75897 5.81410 5.86696 6.05929 6.08485 6.15824 6.19780 6.24747 6.27567 6.32048 6.36386 6.49496 6.61035 6.64109 6.68680 7.37970 7.47987 7.72001 8.09385 8.18088 8.48757 8.72782 8.89366 9.35796 10.83750 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.003504 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.771476 B = 7988.605485 C = 9720.298946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.040 3.960 3 N -0.359 5.359 4 O 0.107 5.893 5 C -0.007 4.007 6 C -0.015 4.015 7 C -0.097 4.097 8 C -0.120 4.120 9 C -0.109 4.109 10 C -0.113 4.113 11 C -0.094 4.094 12 C 0.080 3.920 13 N -0.664 5.664 14 C 0.729 3.271 15 O -0.588 6.588 16 N -0.660 5.660 17 C 0.095 3.905 18 C 0.038 3.962 19 C -0.518 4.518 20 H 0.064 0.936 21 C 0.070 3.930 22 N -0.885 5.885 23 Si 0.896 3.104 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.123 3.877 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.409 0.591 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.264 0.736 41 H 0.058 0.942 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.044 11.108 1.713 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 N -0.066 5.066 4 O 0.044 5.956 5 C -0.073 4.073 6 C -0.017 4.017 7 C -0.115 4.115 8 C -0.138 4.138 9 C -0.127 4.127 10 C -0.131 4.131 11 C -0.113 4.113 12 C -0.019 4.019 13 N -0.320 5.320 14 C 0.433 3.567 15 O -0.466 6.466 16 N -0.397 5.397 17 C -0.027 4.027 18 C 0.018 3.982 19 C -0.556 4.556 20 H 0.082 0.918 21 C -0.134 4.134 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.196 1.196 27 C 0.001 3.999 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.247 0.753 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.471 13.084 1.240 17.445 hybrid contribution 0.273 -2.053 0.289 2.091 sum 11.744 11.031 1.529 16.185 Atomic orbital electron populations 1.20105 0.85349 1.03233 1.03738 1.23462 0.99240 0.88053 1.01249 1.73741 0.88981 1.23355 1.20487 1.84919 1.21335 1.20688 1.68620 1.22146 0.94567 0.84141 1.06429 1.17561 0.88163 0.92131 1.03818 1.21284 0.91273 1.00334 0.98614 1.21085 0.97833 0.94362 1.00530 1.21348 0.98291 0.94409 0.98660 1.21143 0.91813 1.00529 0.99654 1.21389 0.99507 0.92332 0.98088 1.17704 0.90097 0.85767 1.08351 1.41807 1.59104 1.06023 1.25024 1.15301 0.78678 0.81441 0.81290 1.90897 1.57494 1.57588 1.40598 1.49109 1.56794 1.02495 1.31286 1.23699 1.02508 0.81680 0.94816 1.20374 0.93502 0.93448 0.90834 1.20899 1.48901 0.89428 0.96414 0.91751 1.25020 0.94087 0.99339 0.94970 1.69943 1.46288 1.34381 1.01578 0.86536 0.78084 0.84514 0.78568 1.20500 1.21115 1.19640 1.23278 0.94245 0.86921 0.95474 0.89577 0.90328 0.90792 0.85091 0.85435 0.85606 0.85020 0.85044 0.75286 0.90764 0.92464 0.91213 0.92581 0.92318 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 9.81 36.01 0.35 -0.59 16 2 C 0.04 0.64 7.00 -82.02 -0.57 0.07 16 3 N -0.36 -5.66 12.04 33.64 0.41 -5.26 16 4 O 0.11 1.57 11.05 15.36 0.17 1.74 16 5 C -0.01 -0.10 7.18 -36.08 -0.26 -0.36 16 6 C -0.02 -0.19 5.87 -104.99 -0.62 -0.81 16 7 C -0.10 -1.00 9.74 -39.16 -0.38 -1.38 16 8 C -0.12 -1.05 10.03 -39.64 -0.40 -1.44 16 9 C -0.11 -0.96 10.04 -39.48 -0.40 -1.36 16 10 C -0.11 -1.17 10.03 -39.64 -0.40 -1.56 16 11 C -0.09 -1.15 9.56 -39.17 -0.37 -1.53 16 12 C 0.08 1.26 6.12 -83.03 -0.51 0.75 16 13 N -0.66 -10.44 3.66 -13.82 -0.05 -10.49 16 14 C 0.73 13.87 8.76 -86.92 -0.76 13.11 16 15 O -0.59 -12.96 16.17 5.27 0.09 -12.88 16 16 N -0.66 -12.54 3.69 -190.87 -0.70 -13.25 16 17 C 0.10 1.83 7.88 -8.37 -0.07 1.76 16 18 C 0.04 0.83 3.79 -91.13 -0.35 0.48 16 19 C -0.52 -12.51 8.83 -34.44 -0.30 -12.81 16 20 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 21 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -23.04 13.26 55.43 0.74 -22.31 16 23 Si 0.90 19.28 29.54 -169.99 -5.02 14.26 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 C 0.12 2.42 8.17 -8.52 -0.07 2.35 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.13 1.15 7.96 -52.49 -0.42 0.74 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.13 1.70 5.11 -52.49 -0.27 1.43 16 36 H 0.41 5.60 7.61 -40.82 -0.31 5.29 16 37 H 0.07 1.39 8.10 -51.93 -0.42 0.96 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.69 8.11 -51.93 -0.42 1.27 16 40 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.38 8.10 -51.92 -0.42 0.96 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -28.99 365.00 -9.26 -38.25 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.19 Total: 6.11 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -5.20 Total: -1.68 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.39 Total: -51.31 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.26 Total: -11.14 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.99 -9.26 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596834877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.495 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds