Wall clock time and date at job start Tue Mar 31 2020 15:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30229 * 126.72525 * 2 1 4 4 O 1.20862 * 112.08889 * 180.02562 * 3 2 1 5 5 C 1.34711 * 111.54075 * 359.97438 * 4 3 2 6 6 C 1.47685 * 126.97435 * 179.97438 * 5 4 3 7 7 C 1.39646 * 120.14778 * 1.60807 * 6 5 4 8 8 C 1.37943 * 119.84592 * 179.97438 * 7 6 5 9 9 C 1.38374 * 120.15159 * 359.97438 * 8 7 6 10 10 C 1.38369 * 120.30514 * 0.02562 * 9 8 7 11 11 C 1.37942 * 120.15288 * 359.97438 * 10 9 8 12 12 C 1.37267 * 106.05887 * 0.26287 * 5 4 3 13 13 N 1.40407 * 128.12571 * 179.73795 * 12 5 4 14 14 C 1.34779 * 120.00111 * 241.02621 * 13 12 5 15 15 O 1.21606 * 119.99857 * 354.74413 * 14 13 12 16 16 N 1.34772 * 120.00019 * 174.75131 * 14 13 12 17 17 C 1.47064 * 136.05453 * 359.61854 * 16 14 13 18 18 C 1.53763 * 87.88602 * 152.96957 * 17 16 14 19 19 C 1.50695 * 114.26862 * 139.79010 * 18 17 16 20 20 H 1.07998 * 120.00564 * 266.48222 * 19 18 17 21 21 C 1.37882 * 119.99794 * 86.47471 * 19 18 17 22 22 N 1.31516 * 120.00162 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00037 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47068 * 90.00385 * 23 21 19 25 25 H 1.48504 * 109.47332 * 210.00265 * 23 21 19 26 26 H 1.48500 * 109.47391 * 330.00465 * 23 21 19 27 27 C 1.47063 * 136.05875 * 179.97438 * 16 14 13 28 28 H 1.08997 * 109.47153 * 82.14333 * 1 2 3 29 29 H 1.09004 * 109.47168 * 202.14426 * 1 2 3 30 30 H 1.09004 * 109.46845 * 322.14024 * 1 2 3 31 31 H 1.07994 * 120.07541 * 359.69840 * 7 6 5 32 32 H 1.07989 * 119.92574 * 179.97438 * 8 7 6 33 33 H 1.07996 * 119.84535 * 179.97438 * 9 8 7 34 34 H 1.07999 * 119.92237 * 180.02562 * 10 9 8 35 35 H 1.08001 * 120.08088 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99758 * 61.02451 * 13 12 5 37 37 H 1.09000 * 113.47374 * 267.70050 * 17 16 14 38 38 H 1.08998 * 113.46978 * 38.14717 * 17 16 14 39 39 H 1.08997 * 114.39418 * 272.68156 * 18 17 16 40 40 H 0.96998 * 120.00042 * 179.97438 * 22 21 19 41 41 H 1.08999 * 113.47050 * 321.86717 * 27 16 14 42 42 H 1.09008 * 113.46585 * 92.24021 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2857 1.0438 0.0000 4 8 3.4551 0.7384 -0.0005 5 6 3.6171 -0.5989 -0.0004 6 6 4.8952 -1.3389 -0.0014 7 6 6.1070 -0.6457 0.0313 8 6 7.2971 -1.3432 0.0307 9 6 7.2920 -2.7265 -0.0016 10 6 6.0949 -3.4197 -0.0341 11 6 4.8974 -2.7350 -0.0339 12 6 2.3532 -1.1345 -0.0057 13 7 1.9860 -2.4896 -0.0128 14 6 1.2663 -2.9875 -1.0379 15 8 0.8536 -2.2451 -1.9081 16 7 1.0041 -4.3081 -1.0984 17 6 1.3184 -5.4887 -0.2797 18 6 0.0338 -6.1364 -0.8225 19 6 0.1681 -7.6022 -1.1454 20 1 0.4205 -7.9134 -2.1483 21 6 -0.0312 -8.5462 -0.1604 22 7 -0.3390 -8.1674 1.0609 23 14 0.1344 -10.3632 -0.5608 24 1 1.5391 -10.7924 -0.3413 25 1 -0.7665 -11.1485 0.3206 26 1 -0.2374 -10.5934 -1.9799 27 6 0.2832 -5.2036 -2.0155 28 1 -0.3633 0.1405 -1.0180 29 1 -0.3634 -0.9519 0.3874 30 1 -0.3633 0.8114 0.6307 31 1 6.1124 0.4340 0.0524 32 1 8.2349 -0.8084 0.0554 33 1 8.2266 -3.2676 -0.0024 34 1 6.0981 -4.4994 -0.0588 35 1 3.9638 -3.2772 -0.0588 36 1 2.2502 -3.0675 0.7201 37 1 2.2282 -6.0025 -0.5900 38 1 1.2884 -5.2939 0.7924 39 1 -0.8647 -5.9014 -0.2520 40 1 -0.4795 -8.8315 1.7537 41 1 -0.6285 -4.7660 -2.4222 42 1 0.9197 -5.6414 -2.7845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596834877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:45 Heat of formation + Delta-G solvation = 87.772500 kcal Electronic energy + Delta-G solvation = -27277.355458 eV Core-core repulsion = 23419.786834 eV Total energy + Delta-G solvation = -3857.568624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.07362 -41.49383 -40.07662 -39.26642 -36.79581 -35.05469 -34.62068 -33.55444 -31.95370 -31.02161 -30.12504 -29.65232 -27.08008 -26.67394 -24.51656 -24.25787 -23.16089 -22.36030 -21.50818 -20.74025 -19.30558 -19.00076 -18.76882 -18.38078 -18.02924 -17.07520 -16.82101 -16.48448 -16.30911 -16.02101 -15.52083 -15.25069 -14.76469 -14.46749 -14.42433 -14.30905 -14.21349 -14.06258 -13.92943 -13.68787 -13.24476 -13.20899 -12.78059 -12.73932 -12.57314 -12.34816 -12.17568 -12.11517 -11.73988 -11.46608 -11.15342 -11.05582 -10.99073 -10.52121 -10.47699 -9.97022 -9.59053 -9.24034 -8.14645 -6.25153 -0.54741 0.40155 0.75314 0.95461 1.28135 1.49275 1.53000 1.61249 1.83614 2.00819 2.47442 2.72955 2.82013 3.11517 3.17413 3.20935 3.77929 3.92199 4.01185 4.02909 4.20811 4.26335 4.31331 4.40784 4.47644 4.49993 4.52352 4.58070 4.65690 4.71969 4.73480 4.88538 4.91851 4.99335 5.00052 5.05791 5.33698 5.40893 5.46583 5.52390 5.62881 5.84120 5.94279 6.00369 6.25420 6.83815 6.95024 7.01633 7.38536 7.45833 8.95065 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.003504 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.771476 B = 7988.605485 C = 9720.298946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.028 3.972 3 N -0.372 5.372 4 O 0.111 5.889 5 C 0.013 3.987 6 C -0.045 4.045 7 C -0.097 4.097 8 C -0.116 4.116 9 C -0.099 4.099 10 C -0.123 4.123 11 C -0.109 4.109 12 C 0.046 3.954 13 N -0.647 5.647 14 C 0.731 3.269 15 O -0.619 6.619 16 N -0.658 5.658 17 C 0.113 3.887 18 C 0.026 3.974 19 C -0.526 4.526 20 H 0.067 0.933 21 C 0.025 3.975 22 N -0.917 5.917 23 Si 0.955 3.045 24 H -0.273 1.273 25 H -0.290 1.290 26 H -0.268 1.268 27 C 0.129 3.871 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.144 0.856 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.144 0.856 35 H 0.118 0.882 36 H 0.418 0.582 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.041 0.959 40 H 0.264 0.736 41 H 0.057 0.943 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.749 10.888 1.643 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.132 4.132 3 N -0.079 5.079 4 O 0.049 5.951 5 C -0.053 4.053 6 C -0.046 4.046 7 C -0.115 4.115 8 C -0.134 4.134 9 C -0.117 4.117 10 C -0.141 4.141 11 C -0.128 4.128 12 C -0.052 4.052 13 N -0.302 5.302 14 C 0.435 3.565 15 O -0.500 6.500 16 N -0.395 5.395 17 C -0.009 4.009 18 C 0.006 3.994 19 C -0.564 4.564 20 H 0.085 0.915 21 C -0.176 4.176 22 N -0.555 5.555 23 Si 0.781 3.219 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.192 1.192 27 C 0.007 3.993 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.162 0.838 32 H 0.178 0.822 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.136 0.864 36 H 0.258 0.742 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.200 12.873 1.185 19.203 hybrid contribution -0.445 -1.947 0.304 2.020 sum 13.755 10.927 1.490 17.630 Atomic orbital electron populations 1.20093 0.84633 1.03712 1.03569 1.23744 0.99993 0.88245 1.01194 1.73713 0.89290 1.23446 1.21427 1.84894 1.20979 1.20864 1.68393 1.22513 0.95055 0.83855 1.03885 1.17695 0.88081 0.92333 1.06473 1.21541 0.91050 1.01171 0.97761 1.21492 0.98433 0.94551 0.98904 1.21766 0.98880 0.94727 0.96298 1.21382 0.91727 1.01349 0.99616 1.21399 0.99892 0.92332 0.99148 1.17837 0.90862 0.85554 1.10993 1.41473 1.58119 1.06309 1.24290 1.15338 0.78661 0.80969 0.81555 1.90870 1.58879 1.58173 1.42054 1.48975 1.56871 1.02611 1.31080 1.23449 1.01301 0.81222 0.94958 1.20244 0.93695 0.93255 0.92170 1.21194 1.48244 0.90522 0.96474 0.91457 1.25697 0.94027 1.02995 0.94848 1.70047 1.47656 1.35422 1.02388 0.85601 0.78064 0.80031 0.78223 1.19803 1.21556 1.19234 1.23165 0.94616 0.86521 0.95002 0.90514 0.91090 0.88492 0.83825 0.82172 0.82535 0.83779 0.86449 0.74219 0.89763 0.92107 0.94103 0.92707 0.92449 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.80 9.81 71.24 0.70 -1.11 16 2 C 0.03 0.91 7.00 43.61 0.31 1.22 16 3 N -0.37 -11.71 12.04 -48.31 -0.58 -12.30 16 4 O 0.11 3.20 11.05 65.17 0.72 3.92 16 5 C 0.01 0.37 7.18 24.54 0.18 0.55 16 6 C -0.04 -1.08 5.87 -20.10 -0.12 -1.19 16 7 C -0.10 -1.78 9.74 22.54 0.22 -1.56 16 8 C -0.12 -1.59 10.03 22.23 0.22 -1.37 16 9 C -0.10 -1.38 10.04 22.33 0.22 -1.15 16 10 C -0.12 -2.25 10.03 22.23 0.22 -2.03 16 11 C -0.11 -2.55 9.56 22.54 0.22 -2.34 16 12 C 0.05 1.48 6.12 38.35 0.23 1.72 16 13 N -0.65 -20.59 3.66 -315.90 -1.16 -21.74 16 14 C 0.73 28.11 8.76 179.06 1.57 29.68 16 15 O -0.62 -27.76 16.17 -4.05 -0.07 -27.83 16 16 N -0.66 -25.12 3.69 -876.05 -3.23 -28.35 16 17 C 0.11 4.31 7.88 83.27 0.66 4.96 16 18 C 0.03 1.15 3.79 -11.12 -0.04 1.11 16 19 C -0.53 -25.31 8.83 25.60 0.23 -25.08 16 20 H 0.07 3.14 7.81 -2.91 -0.02 3.11 16 21 C 0.02 1.23 5.46 84.66 0.46 1.69 16 22 N -0.92 -48.12 13.26 21.45 0.28 -47.84 16 23 Si 0.95 39.19 29.54 68.60 2.03 41.22 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.29 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 27 C 0.13 5.11 8.17 83.17 0.68 5.78 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 30 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.14 2.19 7.96 -2.91 -0.02 2.17 16 32 H 0.16 1.16 8.06 -2.92 -0.02 1.14 16 33 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 34 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.12 3.02 5.11 -2.91 -0.01 3.00 16 36 H 0.42 11.58 7.61 -92.71 -0.71 10.87 16 37 H 0.08 3.06 8.10 -2.39 -0.02 3.05 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 39 H 0.04 2.05 8.11 -2.39 -0.02 2.03 16 40 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.08 3.14 8.10 -2.38 -0.02 3.12 16 Total: -1.00 -62.26 365.00 4.31 -57.95 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.36 Total: 24.09 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.95 Total: 10.87 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -4.68 Total: -110.22 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.65 Total: -23.90 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -62.26 4.31 -57.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596834877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.724 kcal (2) G-P(sol) polarization free energy of solvation -62.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds