Wall clock time and date at job start Tue Mar 31 2020 15:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35308 * 126.13050 * 2 1 4 4 C 1.39868 * 107.92280 * 180.14633 * 3 2 1 5 5 C 1.50701 * 125.90249 * 179.85886 * 4 3 2 6 6 C 1.53003 * 109.46802 * 124.71487 * 5 4 3 7 7 H 1.08990 * 109.46943 * 55.00372 * 6 5 4 8 8 C 1.53003 * 109.46775 * 175.00494 * 6 5 4 9 9 N 1.46500 * 109.47225 * 295.00176 * 6 5 4 10 10 S 1.65600 * 119.99991 * 145.00240 * 9 6 5 11 11 O 1.42097 * 104.27312 * 308.92918 * 10 9 6 12 12 O 1.42101 * 104.27829 * 181.07310 * 10 9 6 13 13 C 1.81400 * 104.45011 * 64.99934 * 10 9 6 14 14 C 1.52997 * 109.46973 * 174.34581 * 13 10 9 15 15 C 1.50699 * 115.55146 * 295.22049 * 14 13 10 16 16 H 1.08006 * 119.99664 * 95.16929 * 15 14 13 17 17 C 1.37880 * 120.00083 * 274.88923 * 15 14 13 18 18 N 1.31510 * 120.00053 * 6.45717 * 17 15 14 19 19 Si 1.86797 * 119.99885 * 186.45298 * 17 15 14 20 20 H 1.48504 * 109.47184 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47250 * 120.00076 * 19 17 15 22 22 H 1.48493 * 109.47159 * 240.00300 * 19 17 15 23 23 C 1.52999 * 117.49675 * 80.89766 * 14 13 10 24 24 C 1.53006 * 117.49729 * 149.55238 * 14 13 10 25 25 N 1.30843 * 108.20067 * 359.59749 * 4 3 2 26 26 N 1.34949 * 126.11913 * 179.70501 * 2 1 3 27 27 H 0.96997 * 126.04380 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47323 * 270.27370 * 1 2 3 29 29 H 1.09003 * 109.46854 * 30.26669 * 1 2 3 30 30 H 1.09001 * 109.47848 * 150.27010 * 1 2 3 31 31 H 1.08002 * 126.03924 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.46613 * 4.71836 * 5 4 3 33 33 H 1.08995 * 109.47425 * 244.71294 * 5 4 3 34 34 H 1.08998 * 109.47132 * 299.99843 * 8 6 5 35 35 H 1.09002 * 109.47326 * 59.99770 * 8 6 5 36 36 H 1.08997 * 109.47037 * 179.97438 * 8 6 5 37 37 H 0.97006 * 119.99755 * 325.00242 * 9 6 5 38 38 H 1.09004 * 109.47085 * 54.34573 * 13 10 9 39 39 H 1.08998 * 109.46945 * 294.35149 * 13 10 9 40 40 H 0.96994 * 119.99878 * 185.02501 * 18 17 15 41 41 H 1.09004 * 117.49807 * 215.00208 * 23 14 13 42 42 H 1.09000 * 117.50005 * 0.02562 * 23 14 13 43 43 H 1.09004 * 117.49857 * 359.97438 * 24 14 13 44 44 H 1.08995 * 117.49830 * 144.97148 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 3.6334 0.6558 -0.0034 5 6 4.8543 1.5393 -0.0076 6 6 5.7524 1.1736 1.1760 7 1 5.9858 0.1096 1.1398 8 6 7.0487 1.9830 1.1016 9 7 5.0574 1.4789 2.4290 10 16 5.2741 0.5089 3.7535 11 8 5.0336 -0.8050 3.2688 12 8 4.4418 1.0858 4.7504 13 6 7.0234 0.7175 4.1860 14 6 7.3185 -0.0261 5.4901 15 6 6.6118 0.5003 6.7126 16 1 5.6810 0.0551 7.0319 17 6 7.1565 1.5464 7.4269 18 7 8.2228 2.1679 6.9730 19 14 6.3795 2.0809 9.0394 20 1 5.1992 1.2268 9.3273 21 1 7.3704 1.9411 10.1366 22 1 5.9516 3.4991 8.9365 23 6 7.5538 -1.5355 5.4051 24 6 8.7278 -0.5918 5.6775 25 7 3.6333 -0.6526 0.0034 26 7 2.3025 -1.0901 0.0056 27 1 2.0054 -2.0134 0.0107 28 1 -0.3634 0.0049 1.0276 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3635 -0.8924 -0.5096 31 1 1.9741 2.1210 0.0004 32 1 4.5484 2.5820 0.0769 33 1 5.4034 1.3959 -0.9382 34 1 7.5658 1.7560 0.1693 35 1 6.8153 3.0471 1.1377 36 1 7.6883 1.7229 1.9449 37 1 4.4702 2.2492 2.4827 38 1 7.2420 1.7776 4.3146 39 1 7.6457 0.3125 3.3879 40 1 8.6490 2.8545 7.5093 41 1 7.1973 -2.1479 6.2334 42 1 7.4987 -1.9987 4.4199 43 1 9.4445 -0.4346 4.8714 44 1 9.1438 -0.5828 6.6849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601425795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:17 Heat of formation + Delta-G solvation = 11.203229 kcal Electronic energy + Delta-G solvation = -26781.630717 eV Core-core repulsion = 23056.185751 eV Total energy + Delta-G solvation = -3725.444966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19744 -36.98607 -36.70494 -36.00796 -34.94041 -32.83718 -31.98220 -31.41005 -29.87781 -28.23241 -27.20223 -26.89166 -25.38229 -21.83392 -21.18350 -20.48247 -19.82661 -19.55424 -18.61346 -17.35356 -16.85733 -16.39756 -15.75301 -15.12641 -14.91317 -14.65449 -14.32294 -14.14763 -13.86195 -13.80936 -13.56118 -13.36963 -13.16889 -12.78479 -12.71394 -12.30816 -12.23281 -11.84446 -11.77463 -11.56790 -11.19734 -11.17252 -11.03913 -10.95982 -10.90870 -10.78383 -10.49726 -10.41496 -10.36282 -10.04133 -9.68777 -9.28975 -9.04443 -8.89210 -8.56391 -8.50222 -8.04670 -6.09249 -4.17544 1.22183 1.91939 2.80953 2.90341 3.31728 3.39870 3.48053 3.56296 4.42868 4.49460 4.66811 4.68663 4.85083 4.93817 5.10212 5.15905 5.20269 5.23570 5.26032 5.33129 5.48746 5.56985 5.60228 5.71697 5.76028 5.79281 5.79615 5.93225 6.03176 6.12169 6.26690 6.32717 6.39101 6.47134 6.66104 6.69724 6.73890 7.02109 7.28298 7.32572 7.42273 7.45779 7.77496 7.86974 8.25863 8.88885 9.52795 10.99372 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.003839 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.774407 B = 7292.696150 C = 7703.361604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.079 3.921 3 C -0.270 4.270 4 C 0.081 3.919 5 C -0.041 4.041 6 C 0.151 3.849 7 H 0.095 0.905 8 C -0.180 4.180 9 N -1.123 6.123 10 S 2.605 3.395 11 O -0.972 6.972 12 O -0.950 6.950 13 C -0.556 4.556 14 C 0.043 3.957 15 C -0.504 4.504 16 H 0.070 0.930 17 C 0.078 3.922 18 N -0.877 5.877 19 Si 0.891 3.109 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.281 1.281 23 C -0.215 4.215 24 C -0.139 4.139 25 N -0.273 5.273 26 N -0.474 5.474 27 H 0.436 0.564 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.144 0.856 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.410 0.590 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.261 0.739 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.414 0.017 -16.946 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.049 4.049 3 C -0.299 4.299 4 C -0.086 4.086 5 C -0.082 4.082 6 C 0.042 3.958 7 H 0.113 0.887 8 C -0.239 4.239 9 N -0.879 5.879 10 S 2.701 3.299 11 O -0.962 6.962 12 O -0.940 6.940 13 C -0.689 4.689 14 C 0.041 3.959 15 C -0.541 4.541 16 H 0.088 0.912 17 C -0.126 4.126 18 N -0.513 5.513 19 Si 0.718 3.282 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.207 1.207 23 C -0.252 4.252 24 C -0.178 4.178 25 N -0.095 5.095 26 N -0.183 5.183 27 H 0.279 0.721 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.162 0.838 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.243 0.757 38 H 0.152 0.848 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.201 -1.507 -16.567 18.547 hybrid contribution -0.503 1.295 0.801 1.604 sum -8.704 -0.212 -15.766 18.010 Atomic orbital electron populations 1.20444 0.87523 1.03598 1.03515 1.21083 0.94501 0.87981 1.01374 1.21112 0.91759 0.98987 1.18084 1.22129 0.95428 0.91751 0.99294 1.20335 0.91401 0.97577 0.98855 1.20716 0.91047 1.00480 0.83529 0.88686 1.22485 0.97224 1.01282 1.02949 1.55976 1.60299 1.46049 1.25550 1.05153 0.78584 0.73853 0.72261 1.93517 1.84904 1.38066 1.79731 1.93553 1.65052 1.77744 1.57664 1.30088 1.21559 1.11082 1.06122 1.18318 0.98088 0.88592 0.90945 1.20593 1.08206 1.16235 1.09073 0.91238 1.24927 0.94973 0.94850 0.97807 1.70021 1.20606 1.24165 1.36478 0.86542 0.79616 0.78835 0.83229 1.19267 1.20964 1.20738 1.23242 1.06360 0.94600 1.00986 1.22524 0.91147 1.03325 1.00824 1.77360 0.95883 1.12382 1.23903 1.46275 1.04172 1.08118 1.59707 0.72096 0.90089 0.89703 0.91280 0.83792 0.89325 0.89072 0.91446 0.91612 0.91276 0.75721 0.84791 0.88429 0.92956 0.89573 0.90667 0.91539 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.43 36.01 0.38 -0.28 16 2 C 0.08 0.90 7.21 -82.27 -0.59 0.30 16 3 C -0.27 -3.30 10.64 -40.02 -0.43 -3.73 16 4 C 0.08 1.11 6.22 -82.40 -0.51 0.60 16 5 C -0.04 -0.45 5.40 -27.88 -0.15 -0.60 16 6 C 0.15 2.00 2.79 -67.93 -0.19 1.81 16 7 H 0.10 1.43 7.42 -51.93 -0.39 1.05 16 8 C -0.18 -2.02 9.48 37.16 0.35 -1.66 16 9 N -1.12 -17.72 5.07 -4.89 -0.02 -17.75 16 10 S 2.60 54.93 5.33 -107.50 -0.57 54.36 16 11 O -0.97 -22.33 17.39 -57.54 -1.00 -23.33 16 12 O -0.95 -23.68 17.10 -57.54 -0.98 -24.67 16 13 C -0.56 -11.91 4.88 37.16 0.18 -11.73 16 14 C 0.04 1.06 1.34 -155.66 -0.21 0.86 16 15 C -0.50 -14.06 7.66 -34.44 -0.26 -14.32 16 16 H 0.07 2.01 7.82 -52.48 -0.41 1.60 16 17 C 0.08 2.17 5.39 -17.82 -0.10 2.08 16 18 N -0.88 -24.32 12.93 55.43 0.72 -23.61 16 19 Si 0.89 21.76 29.55 -169.99 -5.02 16.74 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 C -0.21 -4.83 9.96 -26.70 -0.27 -5.10 16 24 C -0.14 -3.22 9.44 -26.69 -0.25 -3.47 16 25 N -0.27 -4.23 12.62 33.67 0.42 -3.81 16 26 N -0.47 -6.00 7.36 33.47 0.25 -5.76 16 27 H 0.44 4.23 8.96 -182.61 -1.64 2.60 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.87 5.97 -51.93 -0.31 0.56 16 37 H 0.41 5.72 8.80 -34.47 -0.30 5.42 16 38 H 0.13 2.95 8.14 -51.92 -0.42 2.53 16 39 H 0.10 1.79 7.11 -51.93 -0.37 1.42 16 40 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -36.40 379.60 -10.59 -46.99 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.04 Total: 10.35 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: -2.05 Total: -35.25 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 1.36 Total: -50.92 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -1.98 Total: -48.00 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.57 Total: 54.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.40 -10.59 -46.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601425795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.194 kcal (2) G-P(sol) polarization free energy of solvation -36.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds