Wall clock time and date at job start Tue Mar 31 2020 15:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35308 * 126.13050 * 2 1 4 4 C 1.39868 * 107.92280 * 180.14633 * 3 2 1 5 5 C 1.50701 * 125.90249 * 179.85886 * 4 3 2 6 6 C 1.53003 * 109.46802 * 124.71487 * 5 4 3 7 7 H 1.08990 * 109.46943 * 55.00372 * 6 5 4 8 8 C 1.53003 * 109.46775 * 175.00494 * 6 5 4 9 9 N 1.46500 * 109.47225 * 295.00176 * 6 5 4 10 10 S 1.65600 * 119.99991 * 145.00240 * 9 6 5 11 11 O 1.42097 * 104.27312 * 308.92918 * 10 9 6 12 12 O 1.42101 * 104.27829 * 181.07310 * 10 9 6 13 13 C 1.81400 * 104.45011 * 64.99934 * 10 9 6 14 14 C 1.52997 * 109.46973 * 174.34581 * 13 10 9 15 15 C 1.50699 * 115.55146 * 295.22049 * 14 13 10 16 16 H 1.08006 * 119.99664 * 95.16929 * 15 14 13 17 17 C 1.37880 * 120.00083 * 274.88923 * 15 14 13 18 18 N 1.31510 * 120.00053 * 6.45717 * 17 15 14 19 19 Si 1.86797 * 119.99885 * 186.45298 * 17 15 14 20 20 H 1.48504 * 109.47184 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47250 * 120.00076 * 19 17 15 22 22 H 1.48493 * 109.47159 * 240.00300 * 19 17 15 23 23 C 1.52999 * 117.49675 * 80.89766 * 14 13 10 24 24 C 1.53006 * 117.49729 * 149.55238 * 14 13 10 25 25 N 1.30843 * 108.20067 * 359.59749 * 4 3 2 26 26 N 1.34949 * 126.11913 * 179.70501 * 2 1 3 27 27 H 0.96997 * 126.04380 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47323 * 270.27370 * 1 2 3 29 29 H 1.09003 * 109.46854 * 30.26669 * 1 2 3 30 30 H 1.09001 * 109.47848 * 150.27010 * 1 2 3 31 31 H 1.08002 * 126.03924 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.46613 * 4.71836 * 5 4 3 33 33 H 1.08995 * 109.47425 * 244.71294 * 5 4 3 34 34 H 1.08998 * 109.47132 * 299.99843 * 8 6 5 35 35 H 1.09002 * 109.47326 * 59.99770 * 8 6 5 36 36 H 1.08997 * 109.47037 * 179.97438 * 8 6 5 37 37 H 0.97006 * 119.99755 * 325.00242 * 9 6 5 38 38 H 1.09004 * 109.47085 * 54.34573 * 13 10 9 39 39 H 1.08998 * 109.46945 * 294.35149 * 13 10 9 40 40 H 0.96994 * 119.99878 * 185.02501 * 18 17 15 41 41 H 1.09004 * 117.49807 * 215.00208 * 23 14 13 42 42 H 1.09000 * 117.50005 * 0.02562 * 23 14 13 43 43 H 1.09004 * 117.49857 * 359.97438 * 24 14 13 44 44 H 1.08995 * 117.49830 * 144.97148 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 3.6334 0.6558 -0.0034 5 6 4.8543 1.5393 -0.0076 6 6 5.7524 1.1736 1.1760 7 1 5.9858 0.1096 1.1398 8 6 7.0487 1.9830 1.1016 9 7 5.0574 1.4789 2.4290 10 16 5.2741 0.5089 3.7535 11 8 5.0336 -0.8050 3.2688 12 8 4.4418 1.0858 4.7504 13 6 7.0234 0.7175 4.1860 14 6 7.3185 -0.0261 5.4901 15 6 6.6118 0.5003 6.7126 16 1 5.6810 0.0551 7.0319 17 6 7.1565 1.5464 7.4269 18 7 8.2228 2.1679 6.9730 19 14 6.3795 2.0809 9.0394 20 1 5.1992 1.2268 9.3273 21 1 7.3704 1.9411 10.1366 22 1 5.9516 3.4991 8.9365 23 6 7.5538 -1.5355 5.4051 24 6 8.7278 -0.5918 5.6775 25 7 3.6333 -0.6526 0.0034 26 7 2.3025 -1.0901 0.0056 27 1 2.0054 -2.0134 0.0107 28 1 -0.3634 0.0049 1.0276 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3635 -0.8924 -0.5096 31 1 1.9741 2.1210 0.0004 32 1 4.5484 2.5820 0.0769 33 1 5.4034 1.3959 -0.9382 34 1 7.5658 1.7560 0.1693 35 1 6.8153 3.0471 1.1377 36 1 7.6883 1.7229 1.9449 37 1 4.4702 2.2492 2.4827 38 1 7.2420 1.7776 4.3146 39 1 7.6457 0.3125 3.3879 40 1 8.6490 2.8545 7.5093 41 1 7.1973 -2.1479 6.2334 42 1 7.4987 -1.9987 4.4199 43 1 9.4445 -0.4346 4.8714 44 1 9.1438 -0.5828 6.6849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601425795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:16 Heat of formation + Delta-G solvation = -15.660624 kcal Electronic energy + Delta-G solvation = -26782.795621 eV Core-core repulsion = 23056.185751 eV Total energy + Delta-G solvation = -3726.609870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.10018 -38.57818 -38.18221 -37.66924 -36.73203 -34.06660 -33.74270 -32.28973 -30.98222 -29.90983 -28.07457 -27.75398 -27.42386 -23.04349 -22.83216 -21.55399 -21.35211 -20.65551 -20.23823 -18.52105 -18.32826 -18.17214 -17.08728 -16.83231 -16.57197 -15.93236 -15.87894 -15.60180 -15.18854 -14.97959 -14.63379 -14.48639 -14.20446 -13.83450 -13.64537 -13.55840 -13.48398 -13.16773 -13.12312 -13.04056 -12.87230 -12.85658 -12.83212 -12.51502 -12.41306 -12.32730 -12.21697 -11.95907 -11.87962 -11.53893 -11.29301 -10.86009 -10.56611 -10.47481 -10.11636 -9.86296 -9.46204 -8.18383 -6.31031 -0.43781 1.02565 1.36592 1.40465 1.51962 1.88966 2.05929 2.09985 2.41526 3.01219 3.09492 3.35018 3.50644 3.69972 3.82433 3.96654 4.04826 4.20367 4.28225 4.33858 4.41131 4.48571 4.52882 4.63092 4.69191 4.74638 4.81968 4.86925 4.93737 4.93848 4.98233 5.03682 5.10911 5.19681 5.29607 5.37549 5.44498 5.51014 5.56832 5.74049 5.82236 6.23416 6.27023 6.51758 6.74540 6.84492 7.40338 8.89736 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.003839 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.774407 B = 7292.696150 C = 7703.361604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.080 3.920 3 C -0.293 4.293 4 C 0.069 3.931 5 C -0.038 4.038 6 C 0.146 3.854 7 H 0.075 0.925 8 C -0.179 4.179 9 N -1.108 6.108 10 S 2.620 3.380 11 O -0.995 6.995 12 O -0.996 6.996 13 C -0.549 4.549 14 C 0.010 3.990 15 C -0.523 4.523 16 H 0.045 0.955 17 C 0.041 3.959 18 N -0.892 5.892 19 Si 0.935 3.065 20 H -0.277 1.277 21 H -0.270 1.270 22 H -0.276 1.276 23 C -0.205 4.205 24 C -0.133 4.133 25 N -0.324 5.324 26 N -0.481 5.481 27 H 0.443 0.557 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.165 0.835 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.420 0.580 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.265 0.735 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 1.055 -18.574 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C -0.322 4.322 4 C -0.097 4.097 5 C -0.079 4.079 6 C 0.038 3.962 7 H 0.093 0.907 8 C -0.237 4.237 9 N -0.869 5.869 10 S 2.717 3.283 11 O -0.985 6.985 12 O -0.986 6.986 13 C -0.681 4.681 14 C 0.008 3.992 15 C -0.561 4.561 16 H 0.063 0.937 17 C -0.161 4.161 18 N -0.528 5.528 19 Si 0.760 3.240 20 H -0.202 1.202 21 H -0.195 1.195 22 H -0.202 1.202 23 C -0.243 4.243 24 C -0.172 4.172 25 N -0.147 5.147 26 N -0.191 5.191 27 H 0.288 0.712 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.183 0.817 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.256 0.744 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.367 -0.475 -18.192 20.029 hybrid contribution -0.498 0.939 1.233 1.628 sum -8.865 0.464 -16.959 19.142 Atomic orbital electron populations 1.20585 0.84591 1.05474 1.04163 1.21782 0.96334 0.87351 0.99432 1.21520 0.91492 1.00356 1.18800 1.22638 0.96938 0.91597 0.98566 1.20473 0.90393 0.98441 0.98577 1.20944 0.92425 0.99906 0.82900 0.90726 1.22481 0.95747 1.01787 1.03709 1.55506 1.60675 1.45682 1.25014 1.04384 0.78019 0.73592 0.72340 1.93485 1.85150 1.39776 1.80114 1.93483 1.66457 1.78488 1.60218 1.29952 1.22371 1.10290 1.05518 1.18455 0.99090 0.90215 0.91424 1.20697 1.07771 1.16724 1.10880 0.93687 1.25471 0.95556 0.94933 1.00144 1.70053 1.21121 1.24419 1.37232 0.85867 0.78918 0.78403 0.80813 1.20152 1.19484 1.20169 1.23280 1.05444 0.93612 1.01932 1.22487 0.91049 1.03018 1.00666 1.77270 0.97652 1.13677 1.26105 1.46374 1.03813 1.09050 1.59845 0.71233 0.89853 0.87831 0.89469 0.81744 0.86734 0.86679 0.88735 0.90071 0.92855 0.74450 0.85511 0.85412 0.92606 0.89930 0.88655 0.89301 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.43 71.24 0.74 -0.33 16 2 C 0.08 1.70 7.21 41.40 0.30 2.00 16 3 C -0.29 -6.70 10.64 21.99 0.23 -6.46 16 4 C 0.07 1.81 6.22 43.10 0.27 2.08 16 5 C -0.04 -0.75 5.40 29.85 0.16 -0.59 16 6 C 0.15 3.61 2.79 44.99 0.13 3.73 16 7 H 0.07 2.19 7.42 -2.39 -0.02 2.17 16 8 C -0.18 -3.50 9.48 71.98 0.68 -2.81 16 9 N -1.11 -33.92 5.07 -169.39 -0.86 -34.78 16 10 S 2.62 110.92 5.33 -56.49 -0.30 110.62 16 11 O -1.00 -46.10 17.39 -127.65 -2.22 -48.32 16 12 O -1.00 -50.80 17.10 -127.65 -2.18 -52.98 16 13 C -0.55 -23.23 4.88 71.98 0.35 -22.88 16 14 C 0.01 0.51 1.34 -52.93 -0.07 0.44 16 15 C -0.52 -29.73 7.66 25.60 0.20 -29.54 16 16 H 0.04 2.70 7.82 -2.91 -0.02 2.68 16 17 C 0.04 2.30 5.39 84.66 0.46 2.75 16 18 N -0.89 -49.32 12.93 21.45 0.28 -49.05 16 19 Si 0.93 44.76 29.55 68.60 2.03 46.78 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 C -0.21 -9.16 9.96 30.62 0.30 -8.86 16 24 C -0.13 -6.08 9.44 30.62 0.29 -5.79 16 25 N -0.32 -9.97 12.62 -47.38 -0.60 -10.57 16 26 N -0.48 -12.02 7.36 -48.01 -0.35 -12.37 16 27 H 0.44 8.63 8.96 -213.33 -1.91 6.71 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.11 1.62 8.12 -2.39 -0.02 1.60 16 33 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.22 5.97 -2.39 -0.01 1.21 16 37 H 0.42 11.23 8.80 -96.74 -0.85 10.38 16 38 H 0.13 5.55 8.14 -2.39 -0.02 5.53 16 39 H 0.13 4.50 7.11 -2.39 -0.02 4.48 16 40 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 41 H 0.08 3.68 8.14 -2.38 -0.02 3.66 16 42 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 43 H 0.09 3.60 8.14 -2.38 -0.02 3.58 16 44 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -79.55 379.60 -1.91 -81.47 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -1.74 Total: 35.46 kcal Atomic # 6 Polarization: -70.30 SS G_CDS: 4.04 Total: -66.26 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -1.53 Total: -106.76 kcal Atomic # 8 Polarization: -96.90 SS G_CDS: -4.40 Total: -101.30 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 110.92 SS G_CDS: -0.30 Total: 110.62 kcal Total: -79.55 -1.91 -81.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601425795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.807 kcal (2) G-P(sol) polarization free energy of solvation -79.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds