Wall clock time and date at job start Tue Mar 31 2020 15:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35312 * 126.12699 * 2 1 4 4 C 1.39861 * 107.92360 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.90327 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47220 * 125.00062 * 5 4 3 7 7 H 1.09000 * 109.47015 * 305.00450 * 6 5 4 8 8 C 1.53001 * 109.47027 * 185.00162 * 6 5 4 9 9 N 1.46498 * 109.47169 * 64.99936 * 6 5 4 10 10 S 1.65601 * 120.00364 * 214.99717 * 9 6 5 11 11 O 1.42105 * 104.27580 * 308.93276 * 10 9 6 12 12 O 1.42099 * 104.28044 * 181.07399 * 10 9 6 13 13 C 1.81404 * 104.44631 * 65.00169 * 10 9 6 14 14 C 1.52993 * 109.47096 * 184.60722 * 13 10 9 15 15 C 1.50705 * 115.55070 * 294.72421 * 14 13 10 16 16 H 1.07994 * 120.00173 * 114.87601 * 15 14 13 17 17 C 1.37880 * 119.99472 * 294.60111 * 15 14 13 18 18 N 1.31516 * 119.99431 * 175.02963 * 17 15 14 19 19 Si 1.86792 * 120.00318 * 355.03529 * 17 15 14 20 20 H 1.48506 * 109.47444 * 93.65276 * 19 17 15 21 21 H 1.48501 * 109.47159 * 213.64985 * 19 17 15 22 22 H 1.48503 * 109.47255 * 333.64943 * 19 17 15 23 23 C 1.53004 * 117.50225 * 80.39412 * 14 13 10 24 24 C 1.52999 * 117.49994 * 149.05388 * 14 13 10 25 25 N 1.30846 * 108.20189 * 0.26551 * 4 3 2 26 26 N 1.34943 * 126.12681 * 180.02562 * 2 1 3 27 27 H 0.97001 * 126.03936 * 359.96303 * 26 2 1 28 28 H 1.08998 * 109.47103 * 89.99806 * 1 2 3 29 29 H 1.09001 * 109.47264 * 209.99897 * 1 2 3 30 30 H 1.09005 * 109.46826 * 329.99453 * 1 2 3 31 31 H 1.08008 * 126.04252 * 0.06437 * 3 2 1 32 32 H 1.08995 * 109.47063 * 4.99917 * 5 4 3 33 33 H 1.08996 * 109.46976 * 245.00155 * 5 4 3 34 34 H 1.08997 * 109.47162 * 60.00079 * 8 6 5 35 35 H 1.09003 * 109.46958 * 180.02562 * 8 6 5 36 36 H 1.08996 * 109.47117 * 299.99642 * 8 6 5 37 37 H 0.97001 * 119.99870 * 35.00116 * 9 6 5 38 38 H 1.09001 * 109.47194 * 64.60371 * 13 10 9 39 39 H 1.08999 * 109.46883 * 304.60808 * 13 10 9 40 40 H 0.97003 * 119.99891 * 179.97438 * 18 17 15 41 41 H 1.08993 * 117.49843 * 215.00690 * 23 14 13 42 42 H 1.08995 * 117.49177 * 0.02562 * 23 14 13 43 43 H 1.09000 * 117.49899 * 359.97438 * 24 14 13 44 44 H 1.09005 * 117.50133 * 144.97540 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6334 0.6560 -0.0006 5 6 4.8543 1.5396 -0.0003 6 6 5.7528 1.1675 1.1809 7 1 5.1779 1.2201 2.1054 8 6 6.9283 2.1440 1.2549 9 7 6.2602 -0.1946 0.9984 10 16 6.4823 -1.1785 2.3118 11 8 7.2540 -0.3940 3.2109 12 8 6.9976 -2.3840 1.7636 13 6 4.8117 -1.4408 2.9684 14 6 4.8943 -2.2499 4.2642 15 6 5.4054 -3.6601 4.1186 16 1 6.3417 -3.9450 4.5750 17 6 4.6746 -4.5881 3.4072 18 7 5.1653 -5.7900 3.1968 19 14 2.9881 -4.1381 2.7423 20 1 3.1200 -3.6534 1.3448 21 1 2.1095 -5.3351 2.7701 22 1 2.3937 -3.0682 3.5834 23 6 5.2559 -1.4964 5.5458 24 6 3.8244 -1.9926 5.3272 25 7 3.6334 -0.6524 -0.0067 26 7 2.3026 -1.0900 -0.0005 27 1 2.0056 -2.0134 -0.0004 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9741 2.1211 0.0010 32 1 4.5484 2.5818 0.0901 33 1 5.4030 1.4014 -0.9318 34 1 6.5507 3.1575 1.3907 35 1 7.5687 1.8787 2.0961 36 1 7.5032 2.0913 0.3304 37 1 6.4662 -0.5202 0.1082 38 1 4.2153 -1.9861 2.2369 39 1 4.3455 -0.4766 3.1711 40 1 4.6511 -6.4430 2.6967 41 1 5.8634 -2.0206 6.2835 42 1 5.4344 -0.4242 5.4657 43 1 3.0619 -1.2465 5.1035 44 1 3.4898 -2.8433 5.9209 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601425796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:22 Heat of formation + Delta-G solvation = 17.398866 kcal Electronic energy + Delta-G solvation = -27768.785894 eV Core-core repulsion = 24043.609592 eV Total energy + Delta-G solvation = -3725.176303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27585 -37.07411 -37.01635 -36.05339 -34.98536 -32.80912 -32.16681 -31.51563 -29.89434 -28.45865 -27.33034 -26.93015 -25.46020 -21.86734 -21.59606 -20.56309 -19.86093 -19.48376 -18.61971 -17.36898 -16.92485 -16.59996 -16.03025 -15.15710 -15.02420 -14.96261 -14.34434 -14.25168 -13.92194 -13.80131 -13.55239 -13.26912 -13.09638 -12.86552 -12.76341 -12.56966 -12.51741 -12.26267 -12.11218 -11.64011 -11.34371 -11.25859 -11.07425 -11.05219 -10.85408 -10.77752 -10.67988 -10.46783 -10.43956 -10.08723 -9.59407 -9.34792 -9.15565 -9.04001 -8.71553 -8.63216 -8.36337 -6.14553 -4.19032 1.14515 1.86314 2.71608 2.85093 3.12041 3.23020 3.33198 3.50999 4.34417 4.43980 4.56768 4.63870 4.77640 4.84470 4.91348 4.95342 5.08885 5.17116 5.21251 5.24494 5.43073 5.51072 5.55151 5.57189 5.64015 5.69972 5.74074 5.84969 5.91060 6.00988 6.05177 6.09927 6.32491 6.36363 6.40526 6.49589 6.62717 6.68456 6.91860 7.10716 7.26968 7.44934 7.63214 7.72818 8.41821 8.90763 9.47301 10.97426 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.007289 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.717456 B = 3840.614863 C = 5375.584986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.082 3.918 3 C -0.271 4.271 4 C 0.072 3.928 5 C -0.045 4.045 6 C 0.158 3.842 7 H 0.079 0.921 8 C -0.171 4.171 9 N -1.117 6.117 10 S 2.620 3.380 11 O -0.971 6.971 12 O -0.938 6.938 13 C -0.572 4.572 14 C 0.002 3.998 15 C -0.506 4.506 16 H 0.086 0.914 17 C 0.092 3.908 18 N -0.878 5.878 19 Si 0.859 3.141 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.248 1.248 23 C -0.180 4.180 24 C -0.179 4.179 25 N -0.272 5.272 26 N -0.473 5.473 27 H 0.437 0.563 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.414 0.586 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.266 0.734 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 17.276 -8.247 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.047 4.047 3 C -0.300 4.300 4 C -0.095 4.095 5 C -0.085 4.085 6 C 0.049 3.951 7 H 0.097 0.903 8 C -0.230 4.230 9 N -0.874 5.874 10 S 2.714 3.286 11 O -0.961 6.961 12 O -0.928 6.928 13 C -0.703 4.703 14 C -0.001 4.001 15 C -0.543 4.543 16 H 0.104 0.896 17 C -0.113 4.113 18 N -0.513 5.513 19 Si 0.686 3.314 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.171 1.171 23 C -0.218 4.218 24 C -0.218 4.218 25 N -0.095 5.095 26 N -0.182 5.182 27 H 0.281 0.719 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.163 0.837 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.247 0.753 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.245 15.786 -7.868 19.068 hybrid contribution -2.488 0.220 -0.906 2.657 sum -9.733 16.005 -8.773 20.685 Atomic orbital electron populations 1.20462 0.87518 1.04011 1.03257 1.21131 0.94579 0.87929 1.01025 1.21079 0.91589 0.98869 1.18470 1.22226 0.95382 0.91817 1.00081 1.20431 0.91092 0.97334 0.99680 1.20599 0.94022 0.82492 0.98004 0.90270 1.22331 0.98654 0.98404 1.03590 1.55950 1.82906 1.23558 1.24946 1.04735 0.77390 0.73065 0.73384 1.93493 1.66760 1.70521 1.65375 1.93600 1.77291 1.45300 1.76606 1.30218 1.23647 1.06767 1.09659 1.18863 1.01667 0.95605 0.83918 1.20356 1.08544 0.90065 1.35293 0.89649 1.24878 0.97340 0.94657 0.94403 1.69883 1.37424 1.04990 1.39030 0.87108 0.85689 0.78779 0.79817 1.20176 1.21678 1.17132 1.22974 0.98661 0.98641 1.01475 1.23037 0.91059 1.02088 1.05585 1.77455 0.95872 1.12358 1.23822 1.46517 1.04263 1.08418 1.59021 0.71860 0.90224 0.91088 0.89568 0.83726 0.88698 0.89391 0.91794 0.90511 0.92072 0.75282 0.86020 0.88214 0.92400 0.88901 0.90062 0.91288 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.43 36.01 0.38 -0.33 16 2 C 0.08 0.94 7.21 -82.27 -0.59 0.35 16 3 C -0.27 -3.06 10.64 -40.02 -0.43 -3.48 16 4 C 0.07 0.93 6.46 -82.40 -0.53 0.40 16 5 C -0.04 -0.45 5.40 -27.88 -0.15 -0.60 16 6 C 0.16 1.98 2.67 -67.93 -0.18 1.80 16 7 H 0.08 1.01 7.07 -51.93 -0.37 0.64 16 8 C -0.17 -1.87 9.52 37.16 0.35 -1.52 16 9 N -1.12 -17.89 4.37 -4.89 -0.02 -17.91 16 10 S 2.62 56.49 5.13 -107.50 -0.55 55.93 16 11 O -0.97 -21.80 17.11 -57.54 -0.98 -22.78 16 12 O -0.94 -24.59 17.66 -57.54 -1.02 -25.60 16 13 C -0.57 -12.27 5.48 37.15 0.20 -12.07 16 14 C 0.00 0.05 0.79 -155.66 -0.12 -0.07 16 15 C -0.51 -14.58 8.68 -34.44 -0.30 -14.88 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 17 C 0.09 2.70 5.47 -17.82 -0.10 2.60 16 18 N -0.88 -27.29 13.96 55.43 0.77 -26.52 16 19 Si 0.86 20.87 24.93 -169.99 -4.24 16.63 16 20 H -0.28 -6.29 7.02 56.52 0.40 -5.89 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.25 -5.64 5.75 56.52 0.32 -5.31 16 23 C -0.18 -3.84 9.96 -26.69 -0.27 -4.11 16 24 C -0.18 -3.81 8.07 -26.69 -0.22 -4.02 16 25 N -0.27 -4.27 11.49 33.67 0.39 -3.89 16 26 N -0.47 -6.67 7.36 33.48 0.25 -6.43 16 27 H 0.44 5.84 8.95 -182.61 -1.63 4.21 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.03 7.42 -51.93 -0.39 0.64 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.41 6.12 8.80 -34.47 -0.30 5.82 16 38 H 0.12 2.70 4.69 -51.92 -0.24 2.46 16 39 H 0.10 1.81 7.27 -51.92 -0.38 1.43 16 40 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.09 1.97 8.14 -51.93 -0.42 1.54 16 42 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -37.07 370.82 -9.79 -46.86 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -8.02 Total: 14.05 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: -1.95 Total: -35.93 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 1.39 Total: -54.75 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -2.00 Total: -48.39 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.24 Total: 16.63 kcal Atomic # 16 Polarization: 56.49 SS G_CDS: -0.55 Total: 55.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.07 -9.79 -46.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601425796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.257 kcal (2) G-P(sol) polarization free energy of solvation -37.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds