Wall clock time and date at job start Tue Mar 31 2020 15:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30835 * 125.89800 * 2 1 4 4 N 1.40080 * 108.20371 * 180.02562 * 3 2 1 5 5 H 0.97006 * 126.03712 * 179.97438 * 4 3 2 6 6 C 1.34944 * 107.92560 * 359.76037 * 4 3 2 7 7 C 1.50701 * 126.12497 * 180.23792 * 6 4 3 8 8 C 1.35318 * 107.74644 * 0.38767 * 6 4 3 9 9 C 1.50702 * 126.03813 * 179.87618 * 8 6 4 10 10 H 1.09000 * 109.47230 * 347.55895 * 9 8 6 11 11 C 1.53005 * 109.46962 * 107.56017 * 9 8 6 12 12 N 1.46494 * 109.46989 * 227.56165 * 9 8 6 13 13 S 1.65595 * 120.00191 * 110.88721 * 12 9 8 14 14 O 1.42104 * 104.27698 * 308.92578 * 13 12 9 15 15 O 1.42101 * 104.27557 * 181.07134 * 13 12 9 16 16 C 1.81393 * 104.45006 * 64.99966 * 13 12 9 17 17 C 1.53004 * 109.47287 * 182.27532 * 16 13 12 18 18 C 1.50704 * 115.54822 * 302.79931 * 17 16 13 19 19 H 1.07995 * 120.00243 * 95.84734 * 18 17 16 20 20 C 1.37877 * 119.99632 * 275.56823 * 18 17 16 21 21 N 1.31515 * 119.99936 * 356.31637 * 20 18 17 22 22 Si 1.86802 * 119.99913 * 176.31219 * 20 18 17 23 23 H 1.48497 * 109.46862 * 60.00296 * 22 20 18 24 24 H 1.48501 * 109.46982 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46946 * 300.00311 * 22 20 18 26 26 C 1.53006 * 117.49772 * 88.46206 * 17 16 13 27 27 C 1.52996 * 117.50147 * 157.12590 * 17 16 13 28 28 H 1.08998 * 109.47632 * 271.36061 * 1 2 3 29 29 H 1.09003 * 109.47020 * 31.37019 * 1 2 3 30 30 H 1.09004 * 109.47213 * 151.36098 * 1 2 3 31 31 H 1.09000 * 109.47511 * 270.17274 * 7 6 4 32 32 H 1.08997 * 109.47426 * 30.17553 * 7 6 4 33 33 H 1.09008 * 109.46915 * 150.17606 * 7 6 4 34 34 H 1.09003 * 109.46690 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.46925 * 300.00012 * 11 9 8 36 36 H 1.09000 * 109.46731 * 59.99989 * 11 9 8 37 37 H 0.97000 * 119.99648 * 290.88492 * 12 9 8 38 38 H 1.09000 * 109.47448 * 62.27558 * 16 13 12 39 39 H 1.08996 * 109.47267 * 302.27404 * 16 13 12 40 40 H 0.97002 * 119.99811 * 185.00735 * 21 20 18 41 41 H 1.08994 * 117.49747 * 215.00434 * 26 17 16 42 42 H 1.08998 * 117.49821 * 0.02653 * 26 17 16 43 43 H 1.09004 * 117.49788 * 359.97438 * 27 17 16 44 44 H 1.09000 * 117.50253 * 144.97874 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2079 -0.0011 6 6 3.6142 -0.7153 0.0044 7 6 4.8350 -1.5988 0.0108 8 6 2.3271 -1.1330 -0.0006 9 6 1.8599 -2.5658 -0.0004 10 1 2.7023 -3.2227 -0.2169 11 6 1.2819 -2.9135 1.3730 12 7 0.8270 -2.7428 -1.0240 13 16 1.1466 -3.6445 -2.3756 14 8 2.3639 -3.1079 -2.8751 15 8 -0.0519 -3.5734 -3.1358 16 6 1.4029 -5.3268 -1.7472 17 6 1.7657 -6.2551 -2.9081 18 6 0.7634 -6.3125 -4.0321 19 1 0.8965 -5.6927 -4.9064 20 6 -0.3204 -7.1606 -3.9466 21 7 -0.4412 -7.9716 -2.9184 22 14 -1.6171 -7.1574 -5.2912 23 1 -0.9861 -7.5112 -6.5881 24 1 -2.6706 -8.1519 -4.9652 25 1 -2.2255 -5.8063 -5.3889 26 6 3.2457 -6.3833 -3.2741 27 6 2.5270 -7.5395 -2.5741 28 1 -0.3634 0.0244 1.0273 29 1 -0.3633 0.8775 -0.5350 30 1 -0.3634 -0.9020 -0.4926 31 1 5.1338 -1.8132 -1.0153 32 1 5.6489 -1.0903 0.5275 33 1 4.6053 -2.5323 0.5248 34 1 0.9435 -3.9497 1.3730 35 1 2.0504 -2.7817 2.1345 36 1 0.4394 -2.2565 1.5894 37 1 -0.0442 -2.3317 -0.9101 38 1 0.4880 -5.6803 -1.2716 39 1 2.2132 -5.3228 -1.0183 40 1 -1.1635 -8.6186 -2.8933 41 1 3.4945 -6.5092 -4.3278 42 1 3.9610 -5.8066 -2.6876 43 1 2.7698 -7.7230 -1.5274 44 1 2.3028 -8.4262 -3.1671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601439228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:27 Heat of formation + Delta-G solvation = 18.265965 kcal Electronic energy + Delta-G solvation = -27216.926993 eV Core-core repulsion = 23491.788291 eV Total energy + Delta-G solvation = -3725.138702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.43043 -36.72163 -36.51436 -35.99160 -34.96392 -33.40550 -32.00231 -31.28186 -29.52095 -28.17946 -27.96058 -26.87726 -25.42304 -22.88333 -21.17364 -20.31262 -19.78229 -19.47247 -18.68905 -17.31630 -16.89798 -16.38995 -15.59225 -15.15798 -14.99193 -14.65918 -14.37057 -14.27678 -13.80671 -13.75297 -13.36587 -13.29443 -13.01842 -12.80195 -12.63303 -12.42471 -12.26009 -12.01926 -11.79534 -11.77566 -11.44203 -11.17606 -11.09913 -11.04764 -10.95036 -10.84282 -10.52987 -10.42641 -10.41322 -10.07621 -9.68582 -9.26144 -9.24810 -9.00147 -8.50197 -8.39351 -8.06809 -6.10117 -4.22762 1.14466 1.83853 2.66586 2.81441 3.36252 3.38431 3.49270 3.57272 4.42168 4.57251 4.59468 4.65224 4.89451 5.02053 5.05328 5.15884 5.18700 5.25936 5.26655 5.30646 5.42638 5.52508 5.55888 5.69752 5.72130 5.75239 5.85093 5.88668 6.00214 6.10316 6.14889 6.26074 6.35245 6.44661 6.63212 6.64640 6.72436 7.00792 7.22996 7.25501 7.37496 7.45836 7.68137 7.82972 8.21698 8.82926 9.50162 10.96534 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018952 B = 0.004187 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.050677 B = 6686.245107 C = 7273.529623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.096 3.904 3 N -0.301 5.301 4 N -0.478 5.478 5 H 0.436 0.564 6 C 0.103 3.897 7 C -0.100 4.100 8 C -0.239 4.239 9 C 0.231 3.769 10 H 0.088 0.912 11 C -0.159 4.159 12 N -1.124 6.124 13 S 2.608 3.392 14 O -0.972 6.972 15 O -0.948 6.948 16 C -0.557 4.557 17 C 0.041 3.959 18 C -0.517 4.517 19 H 0.067 0.933 20 C 0.084 3.916 21 N -0.875 5.875 22 Si 0.889 3.111 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.265 1.265 26 C -0.208 4.208 27 C -0.135 4.135 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.408 0.592 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.263 0.737 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 10.936 11.590 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 N -0.124 5.124 4 N -0.186 5.186 5 H 0.279 0.721 6 C -0.027 4.027 7 C -0.158 4.158 8 C -0.252 4.252 9 C 0.122 3.878 10 H 0.106 0.894 11 C -0.218 4.218 12 N -0.883 5.883 13 S 2.704 3.296 14 O -0.962 6.962 15 O -0.938 6.938 16 C -0.689 4.689 17 C 0.039 3.961 18 C -0.554 4.554 19 H 0.085 0.915 20 C -0.121 4.121 21 N -0.511 5.511 22 Si 0.715 3.285 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.190 1.190 26 C -0.246 4.246 27 C -0.174 4.174 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.245 0.755 38 H 0.149 0.851 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.855 12.379 10.792 17.796 hybrid contribution -0.577 -0.904 -0.016 1.073 sum 6.278 11.475 10.776 16.947 Atomic orbital electron populations 1.20382 0.87077 1.03611 1.02948 1.22061 0.96755 0.90047 0.98228 1.77235 0.86477 1.22295 1.26442 1.46089 1.07239 1.04748 1.60554 0.72053 1.20859 0.96866 0.84924 1.00010 1.20563 0.92644 0.98263 1.04362 1.19947 0.91321 0.96487 1.17473 1.18756 0.89619 0.91022 0.88415 0.89391 1.22180 1.01656 1.02282 0.95683 1.56352 1.22672 1.68883 1.40369 1.05123 0.74509 0.76733 0.73216 1.93495 1.48155 1.77127 1.77389 1.93558 1.46926 1.86500 1.66780 1.30010 1.09589 1.20540 1.08799 1.18266 0.89566 0.95391 0.92895 1.20486 1.06298 1.25971 1.02685 0.91514 1.24920 0.97117 0.94559 0.95479 1.69987 1.32079 1.19804 1.29182 0.86681 0.81297 0.78567 0.81927 1.20030 1.21167 1.19014 1.23167 0.96222 1.04686 1.00485 1.22502 1.03421 0.93491 0.98006 0.90314 0.90682 0.90119 0.89158 0.91084 0.89410 0.91429 0.91684 0.91887 0.75502 0.85127 0.88531 0.92739 0.89685 0.91029 0.91709 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.79 36.01 0.35 -0.54 16 2 C 0.10 1.31 7.16 -82.41 -0.59 0.72 16 3 N -0.30 -4.25 12.70 33.67 0.43 -3.82 16 4 N -0.48 -5.54 7.36 33.48 0.25 -5.29 16 5 H 0.44 3.52 8.96 -182.61 -1.64 1.89 16 6 C 0.10 1.23 7.21 -82.26 -0.59 0.64 16 7 C -0.10 -0.87 10.00 36.01 0.36 -0.51 16 8 C -0.24 -3.21 5.02 -105.05 -0.53 -3.74 16 9 C 0.23 2.95 2.87 -69.08 -0.20 2.75 16 10 H 0.09 1.08 6.38 -51.93 -0.33 0.74 16 11 C -0.16 -1.60 9.50 37.16 0.35 -1.24 16 12 N -1.12 -16.95 4.92 -5.88 -0.03 -16.97 16 13 S 2.61 52.68 4.96 -107.50 -0.53 52.15 16 14 O -0.97 -21.34 17.78 -57.54 -1.02 -22.37 16 15 O -0.95 -22.91 17.25 -57.54 -0.99 -23.91 16 16 C -0.56 -11.27 5.98 37.16 0.22 -11.05 16 17 C 0.04 0.98 1.50 -155.65 -0.23 0.75 16 18 C -0.52 -14.12 7.54 -34.44 -0.26 -14.38 16 19 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 20 C 0.08 2.31 5.43 -17.82 -0.10 2.21 16 21 N -0.88 -23.96 12.70 55.43 0.70 -23.25 16 22 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 26 C -0.21 -4.46 9.94 -26.69 -0.27 -4.73 16 27 C -0.14 -3.02 9.23 -26.69 -0.25 -3.27 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.87 4.75 -51.93 -0.25 0.62 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.68 7.37 -51.92 -0.38 0.29 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.58 7.67 -51.93 -0.40 0.19 16 37 H 0.41 5.46 5.90 -34.47 -0.20 5.25 16 38 H 0.13 2.71 8.14 -51.92 -0.42 2.29 16 39 H 0.10 1.59 7.73 -51.93 -0.40 1.18 16 40 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -35.38 374.15 -10.10 -45.48 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.80 Total: 8.12 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: -1.72 Total: -32.38 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 1.35 Total: -49.34 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -2.02 Total: -46.27 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 52.68 SS G_CDS: -0.53 Total: 52.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.38 -10.10 -45.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601439228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.747 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds