Wall clock time and date at job start Tue Mar 31 2020 15:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30835 * 125.89800 * 2 1 4 4 N 1.40080 * 108.20371 * 180.02562 * 3 2 1 5 5 H 0.97006 * 126.03712 * 179.97438 * 4 3 2 6 6 C 1.34944 * 107.92560 * 359.76037 * 4 3 2 7 7 C 1.50701 * 126.12497 * 180.23792 * 6 4 3 8 8 C 1.35318 * 107.74644 * 0.38767 * 6 4 3 9 9 C 1.50702 * 126.03813 * 179.87618 * 8 6 4 10 10 H 1.09000 * 109.47230 * 347.55895 * 9 8 6 11 11 C 1.53005 * 109.46962 * 107.56017 * 9 8 6 12 12 N 1.46494 * 109.46989 * 227.56165 * 9 8 6 13 13 S 1.65595 * 120.00191 * 110.88721 * 12 9 8 14 14 O 1.42104 * 104.27698 * 308.92578 * 13 12 9 15 15 O 1.42101 * 104.27557 * 181.07134 * 13 12 9 16 16 C 1.81393 * 104.45006 * 64.99966 * 13 12 9 17 17 C 1.53004 * 109.47287 * 182.27532 * 16 13 12 18 18 C 1.50704 * 115.54822 * 302.79931 * 17 16 13 19 19 H 1.07995 * 120.00243 * 95.84734 * 18 17 16 20 20 C 1.37877 * 119.99632 * 275.56823 * 18 17 16 21 21 N 1.31515 * 119.99936 * 356.31637 * 20 18 17 22 22 Si 1.86802 * 119.99913 * 176.31219 * 20 18 17 23 23 H 1.48497 * 109.46862 * 60.00296 * 22 20 18 24 24 H 1.48501 * 109.46982 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46946 * 300.00311 * 22 20 18 26 26 C 1.53006 * 117.49772 * 88.46206 * 17 16 13 27 27 C 1.52996 * 117.50147 * 157.12590 * 17 16 13 28 28 H 1.08998 * 109.47632 * 271.36061 * 1 2 3 29 29 H 1.09003 * 109.47020 * 31.37019 * 1 2 3 30 30 H 1.09004 * 109.47213 * 151.36098 * 1 2 3 31 31 H 1.09000 * 109.47511 * 270.17274 * 7 6 4 32 32 H 1.08997 * 109.47426 * 30.17553 * 7 6 4 33 33 H 1.09008 * 109.46915 * 150.17606 * 7 6 4 34 34 H 1.09003 * 109.46690 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.46925 * 300.00012 * 11 9 8 36 36 H 1.09000 * 109.46731 * 59.99989 * 11 9 8 37 37 H 0.97000 * 119.99648 * 290.88492 * 12 9 8 38 38 H 1.09000 * 109.47448 * 62.27558 * 16 13 12 39 39 H 1.08996 * 109.47267 * 302.27404 * 16 13 12 40 40 H 0.97002 * 119.99811 * 185.00735 * 21 20 18 41 41 H 1.08994 * 117.49747 * 215.00434 * 26 17 16 42 42 H 1.08998 * 117.49821 * 0.02653 * 26 17 16 43 43 H 1.09004 * 117.49788 * 359.97438 * 27 17 16 44 44 H 1.09000 * 117.50253 * 144.97874 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2079 -0.0011 6 6 3.6142 -0.7153 0.0044 7 6 4.8350 -1.5988 0.0108 8 6 2.3271 -1.1330 -0.0006 9 6 1.8599 -2.5658 -0.0004 10 1 2.7023 -3.2227 -0.2169 11 6 1.2819 -2.9135 1.3730 12 7 0.8270 -2.7428 -1.0240 13 16 1.1466 -3.6445 -2.3756 14 8 2.3639 -3.1079 -2.8751 15 8 -0.0519 -3.5734 -3.1358 16 6 1.4029 -5.3268 -1.7472 17 6 1.7657 -6.2551 -2.9081 18 6 0.7634 -6.3125 -4.0321 19 1 0.8965 -5.6927 -4.9064 20 6 -0.3204 -7.1606 -3.9466 21 7 -0.4412 -7.9716 -2.9184 22 14 -1.6171 -7.1574 -5.2912 23 1 -0.9861 -7.5112 -6.5881 24 1 -2.6706 -8.1519 -4.9652 25 1 -2.2255 -5.8063 -5.3889 26 6 3.2457 -6.3833 -3.2741 27 6 2.5270 -7.5395 -2.5741 28 1 -0.3634 0.0244 1.0273 29 1 -0.3633 0.8775 -0.5350 30 1 -0.3634 -0.9020 -0.4926 31 1 5.1338 -1.8132 -1.0153 32 1 5.6489 -1.0903 0.5275 33 1 4.6053 -2.5323 0.5248 34 1 0.9435 -3.9497 1.3730 35 1 2.0504 -2.7817 2.1345 36 1 0.4394 -2.2565 1.5894 37 1 -0.0442 -2.3317 -0.9101 38 1 0.4880 -5.6803 -1.2716 39 1 2.2132 -5.3228 -1.0183 40 1 -1.1635 -8.6186 -2.8933 41 1 3.4945 -6.5092 -4.3278 42 1 3.9610 -5.8066 -2.6876 43 1 2.7698 -7.7230 -1.5274 44 1 2.3028 -8.4262 -3.1671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601439228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:26 Heat of formation + Delta-G solvation = -7.437296 kcal Electronic energy + Delta-G solvation = -27218.041570 eV Core-core repulsion = 23491.788291 eV Total energy + Delta-G solvation = -3726.253280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.34637 -38.49709 -37.91682 -37.34265 -36.65653 -34.26932 -34.03704 -32.27209 -30.42646 -29.81600 -28.83567 -27.70646 -27.43355 -23.81663 -22.89963 -21.57204 -21.11626 -20.52122 -20.23540 -18.51752 -18.25296 -18.16763 -16.86642 -16.76185 -16.49627 -16.10445 -15.66539 -15.56486 -15.30158 -14.89825 -14.65008 -14.15500 -14.09811 -13.74025 -13.69826 -13.61916 -13.43933 -13.22091 -13.06886 -13.04740 -12.85347 -12.80363 -12.80227 -12.69589 -12.40204 -12.37132 -12.18246 -12.10051 -11.82114 -11.47866 -11.37779 -10.93559 -10.54272 -10.41881 -10.16769 -9.82799 -9.32405 -8.15873 -6.31228 -0.41942 0.92319 1.38493 1.42802 1.51456 1.67145 2.00396 2.21639 2.42528 3.08392 3.11765 3.41121 3.57583 3.71660 3.77250 4.01274 4.08284 4.22009 4.26876 4.35111 4.45097 4.48679 4.59654 4.62978 4.71013 4.76409 4.78769 4.86072 4.91068 4.97071 5.04168 5.07533 5.16689 5.26161 5.28533 5.36742 5.47861 5.50138 5.69033 5.72542 5.75096 6.24242 6.26651 6.47048 6.74766 6.75977 7.42108 8.89927 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018952 B = 0.004187 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.050677 B = 6686.245107 C = 7273.529623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.082 3.918 3 N -0.332 5.332 4 N -0.473 5.473 5 H 0.449 0.551 6 C 0.105 3.895 7 C -0.102 4.102 8 C -0.266 4.266 9 C 0.224 3.776 10 H 0.096 0.904 11 C -0.156 4.156 12 N -1.111 6.111 13 S 2.619 3.381 14 O -0.994 6.994 15 O -0.998 6.998 16 C -0.550 4.550 17 C 0.005 3.995 18 C -0.534 4.534 19 H 0.044 0.956 20 C 0.048 3.952 21 N -0.889 5.889 22 Si 0.925 3.075 23 H -0.269 1.269 24 H -0.271 1.271 25 H -0.279 1.279 26 C -0.195 4.195 27 C -0.131 4.131 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.416 0.584 38 H 0.124 0.876 39 H 0.139 0.861 40 H 0.265 0.735 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 11.002 13.521 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 N -0.156 5.156 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.026 4.026 7 C -0.160 4.160 8 C -0.279 4.279 9 C 0.116 3.884 10 H 0.114 0.886 11 C -0.215 4.215 12 N -0.873 5.873 13 S 2.717 3.283 14 O -0.983 6.983 15 O -0.988 6.988 16 C -0.682 4.682 17 C 0.003 3.997 18 C -0.571 4.571 19 H 0.062 0.938 20 C -0.156 4.156 21 N -0.526 5.526 22 Si 0.751 3.249 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.205 1.205 26 C -0.232 4.232 27 C -0.170 4.170 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.255 0.745 38 H 0.142 0.858 39 H 0.157 0.843 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.081 12.453 12.714 19.545 hybrid contribution -0.870 -0.848 -0.594 1.352 sum 7.211 11.605 12.119 18.264 Atomic orbital electron populations 1.20479 0.85972 1.03453 1.04368 1.22466 0.97811 0.90194 0.97980 1.77170 0.87623 1.23107 1.27744 1.46147 1.07095 1.05112 1.59862 0.70517 1.21378 0.97645 0.85221 0.98342 1.20720 0.92203 0.98624 1.04465 1.20143 0.92044 0.96619 1.19048 1.19076 0.89296 0.91141 0.88860 0.88615 1.22176 1.02388 1.02630 0.94260 1.55920 1.23834 1.67852 1.39697 1.04451 0.73179 0.76971 0.73699 1.93458 1.48743 1.77559 1.78576 1.93487 1.48765 1.87258 1.69284 1.29853 1.10893 1.19252 1.08247 1.18409 0.90250 0.97484 0.93560 1.20666 1.07627 1.25500 1.03333 0.93797 1.25410 0.98369 0.94689 0.97082 1.70015 1.32566 1.20149 1.29830 0.86110 0.80080 0.77995 0.80723 1.19411 1.19611 1.20506 1.23234 0.95341 1.03990 1.00621 1.22439 1.03126 0.92279 0.99126 0.88112 0.90675 0.90306 0.89913 0.88184 0.88019 0.90956 0.89809 0.91337 0.74490 0.85779 0.84268 0.92580 0.90488 0.87814 0.89170 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 9.79 71.24 0.70 -1.05 16 2 C 0.08 2.14 7.16 43.10 0.31 2.45 16 3 N -0.33 -9.07 12.70 -47.39 -0.60 -9.67 16 4 N -0.47 -10.19 7.36 -48.00 -0.35 -10.55 16 5 H 0.45 6.52 8.96 -213.33 -1.91 4.60 16 6 C 0.10 2.27 7.21 41.41 0.30 2.57 16 7 C -0.10 -1.47 10.00 71.24 0.71 -0.76 16 8 C -0.27 -6.62 5.02 -20.14 -0.10 -6.72 16 9 C 0.22 5.19 2.87 44.25 0.13 5.31 16 10 H 0.10 2.03 6.38 -2.39 -0.02 2.02 16 11 C -0.16 -2.65 9.50 71.98 0.68 -1.96 16 12 N -1.11 -32.02 4.92 -172.52 -0.85 -32.87 16 13 S 2.62 104.35 4.96 -56.49 -0.28 104.07 16 14 O -0.99 -42.88 17.78 -127.65 -2.27 -45.15 16 15 O -1.00 -49.23 17.25 -127.65 -2.20 -51.44 16 16 C -0.55 -21.28 5.98 71.98 0.43 -20.85 16 17 C 0.01 0.24 1.50 -52.92 -0.08 0.16 16 18 C -0.53 -29.50 7.54 25.60 0.19 -29.31 16 19 H 0.04 2.55 7.82 -2.91 -0.02 2.53 16 20 C 0.05 2.62 5.43 84.65 0.46 3.08 16 21 N -0.89 -48.58 12.70 21.45 0.27 -48.30 16 22 Si 0.93 44.63 29.54 68.60 2.03 46.66 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 25 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 26 C -0.19 -7.99 9.94 30.62 0.30 -7.68 16 27 C -0.13 -5.64 9.23 30.62 0.28 -5.36 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.64 4.75 -2.39 -0.01 1.62 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 1.18 7.37 -2.38 -0.02 1.17 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.09 7.67 -2.39 -0.02 1.07 16 37 H 0.42 10.78 5.90 -96.75 -0.57 10.21 16 38 H 0.12 5.00 8.14 -2.39 -0.02 4.98 16 39 H 0.14 4.06 7.73 -2.39 -0.02 4.04 16 40 H 0.27 13.82 8.32 -92.71 -0.77 13.04 16 41 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.10 3.55 8.14 -2.39 -0.02 3.54 16 43 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 44 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -76.83 374.15 -1.39 -78.22 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -1.45 Total: 29.15 kcal Atomic # 6 Polarization: -64.44 SS G_CDS: 4.32 Total: -60.12 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -1.53 Total: -101.39 kcal Atomic # 8 Polarization: -92.12 SS G_CDS: -4.47 Total: -96.59 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 104.35 SS G_CDS: -0.28 Total: 104.07 kcal Total: -76.83 -1.39 -78.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601439228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.783 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds