Wall clock time and date at job start Tue Mar 31 2020 15:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30836 * 125.90232 * 2 1 4 4 N 1.40083 * 108.20555 * 179.81543 * 3 2 1 5 5 H 0.96996 * 126.03856 * 180.23544 * 4 3 2 6 6 C 1.34948 * 107.92794 * 0.35699 * 4 3 2 7 7 C 1.50701 * 126.12896 * 179.90945 * 6 4 3 8 8 C 1.35321 * 107.74365 * 359.64433 * 6 4 3 9 9 C 1.50704 * 126.03916 * 180.24941 * 8 6 4 10 10 H 1.08998 * 109.46910 * 14.99552 * 9 8 6 11 11 C 1.53003 * 109.46666 * 255.00108 * 9 8 6 12 12 N 1.46497 * 109.46973 * 135.00101 * 9 8 6 13 13 S 1.65604 * 119.99759 * 214.99698 * 12 9 8 14 14 O 1.42101 * 104.27681 * 181.07293 * 13 12 9 15 15 O 1.42104 * 104.27540 * 308.92818 * 13 12 9 16 16 C 1.81401 * 104.44912 * 65.00157 * 13 12 9 17 17 C 1.52997 * 109.47043 * 173.66605 * 16 13 12 18 18 C 1.50703 * 115.54992 * 65.18907 * 17 16 13 19 19 H 1.08002 * 120.00201 * 264.78676 * 18 17 16 20 20 C 1.37880 * 119.99970 * 84.78379 * 18 17 16 21 21 N 1.31515 * 119.99941 * 352.23950 * 20 18 17 22 22 Si 1.86797 * 119.99926 * 172.23772 * 20 18 17 23 23 H 1.48494 * 109.47489 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46920 * 120.00145 * 22 20 18 25 25 H 1.48504 * 109.47258 * 240.00037 * 22 20 18 26 26 C 1.52996 * 117.50082 * 279.51803 * 17 16 13 27 27 C 1.52999 * 117.49944 * 210.85742 * 17 16 13 28 28 H 1.09000 * 109.47303 * 269.96511 * 1 2 3 29 29 H 1.09006 * 109.46621 * 29.96526 * 1 2 3 30 30 H 1.09003 * 109.47110 * 149.96092 * 1 2 3 31 31 H 1.09004 * 109.47186 * 269.68593 * 7 6 4 32 32 H 1.08991 * 109.47351 * 29.69005 * 7 6 4 33 33 H 1.09003 * 109.47207 * 149.68898 * 7 6 4 34 34 H 1.09001 * 109.46843 * 180.02562 * 11 9 8 35 35 H 1.08999 * 109.47451 * 299.99670 * 11 9 8 36 36 H 1.08991 * 109.47564 * 60.00123 * 11 9 8 37 37 H 0.96999 * 120.00341 * 35.00097 * 12 9 8 38 38 H 1.08999 * 109.46658 * 293.66387 * 16 13 12 39 39 H 1.08993 * 109.47122 * 53.66287 * 16 13 12 40 40 H 0.97005 * 119.99876 * 185.01741 * 21 20 18 41 41 H 1.09003 * 117.49519 * 0.02562 * 26 17 16 42 42 H 1.09003 * 117.50134 * 145.01633 * 26 17 16 43 43 H 1.09000 * 117.50100 * 214.98050 * 27 17 16 44 44 H 1.09005 * 117.49843 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0043 5 1 4.3908 1.2077 0.0085 6 6 3.6142 -0.7155 -0.0011 7 6 4.8350 -1.5991 -0.0012 8 6 2.3271 -1.1331 -0.0006 9 6 1.8598 -2.5659 -0.0003 10 1 2.6910 -3.2190 0.2654 11 6 1.3463 -2.9350 -1.3935 12 7 0.7802 -2.7272 0.9768 13 16 0.6429 -4.1376 1.8337 14 8 -0.5070 -3.9438 2.6456 15 8 0.6766 -5.1548 0.8420 16 6 2.1411 -4.1943 2.8550 17 6 2.0583 -5.3817 3.8163 18 6 2.0587 -6.7429 3.1694 19 1 1.1240 -7.2432 2.9636 20 6 3.2524 -7.3494 2.8404 21 7 4.3806 -6.6823 2.9484 22 14 3.2670 -9.1186 2.2412 23 1 1.8777 -9.6417 2.2083 24 1 3.8487 -9.1740 0.8759 25 1 4.0865 -9.9465 3.1623 26 6 1.2268 -5.2043 5.0882 27 6 2.7547 -5.2434 5.1715 28 1 -0.3634 -0.0006 1.0277 29 1 -0.3633 0.8904 -0.5133 30 1 -0.3633 -0.8897 -0.5145 31 1 5.1291 -1.8125 -1.0288 32 1 5.6513 -1.0911 0.5123 33 1 4.6077 -2.5329 0.5131 34 1 1.0079 -3.9712 -1.3932 35 1 0.5151 -2.2819 -1.6593 36 1 2.1494 -2.8150 -2.1204 37 1 0.1458 -2.0079 1.1217 38 1 3.0145 -4.3070 2.2127 39 1 2.2267 -3.2699 3.4260 40 1 5.2116 -7.0831 2.6486 41 1 0.7384 -4.2417 5.2400 42 1 0.6803 -6.0722 5.4574 43 1 3.2129 -6.1370 5.5955 44 1 3.2723 -4.3066 5.3781 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601439229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:31 Heat of formation + Delta-G solvation = 12.451365 kcal Electronic energy + Delta-G solvation = -27271.400681 eV Core-core repulsion = 23546.009838 eV Total energy + Delta-G solvation = -3725.390842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51299 -36.74858 -36.50271 -35.99851 -34.98937 -33.46617 -32.04038 -31.29868 -29.43608 -28.19644 -27.93064 -26.90768 -25.44878 -22.84421 -21.20350 -20.37590 -19.74582 -19.52030 -18.57388 -17.40760 -16.91291 -16.36804 -15.48260 -15.29991 -15.03672 -14.72032 -14.32308 -14.18167 -13.79902 -13.74571 -13.40878 -13.20763 -13.08899 -12.81351 -12.69032 -12.43350 -12.16994 -11.96515 -11.88162 -11.81257 -11.36195 -11.25010 -11.16839 -11.02758 -10.94959 -10.89013 -10.55636 -10.44574 -10.34415 -10.09805 -9.73331 -9.33235 -9.22281 -8.94348 -8.56946 -8.47139 -8.07318 -6.14467 -4.24155 1.13293 1.75945 2.59235 2.74575 3.28300 3.36283 3.44055 3.56575 4.37416 4.48867 4.52426 4.63799 4.93902 5.02185 5.09909 5.14333 5.19349 5.22549 5.27135 5.37986 5.46240 5.50642 5.58998 5.71521 5.76748 5.82483 5.86656 5.99745 6.02128 6.10605 6.26114 6.37625 6.42638 6.48706 6.61708 6.63183 6.73555 6.99082 7.18077 7.24044 7.37078 7.39816 7.60456 7.80675 8.21298 8.81703 9.46809 10.93308 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.004523 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.459758 B = 6189.644907 C = 6578.881568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.093 3.907 3 N -0.299 5.299 4 N -0.477 5.477 5 H 0.437 0.563 6 C 0.102 3.898 7 C -0.102 4.102 8 C -0.238 4.238 9 C 0.232 3.768 10 H 0.090 0.910 11 C -0.165 4.165 12 N -1.127 6.127 13 S 2.606 3.394 14 O -0.976 6.976 15 O -0.948 6.948 16 C -0.555 4.555 17 C 0.044 3.956 18 C -0.513 4.513 19 H 0.069 0.931 20 C 0.082 3.918 21 N -0.875 5.875 22 Si 0.891 3.109 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.283 1.283 26 C -0.209 4.209 27 C -0.142 4.142 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.407 0.593 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 13.227 -6.818 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 N -0.122 5.122 4 N -0.185 5.185 5 H 0.281 0.719 6 C -0.027 4.027 7 C -0.161 4.161 8 C -0.251 4.251 9 C 0.123 3.877 10 H 0.108 0.892 11 C -0.224 4.224 12 N -0.884 5.884 13 S 2.703 3.297 14 O -0.966 6.966 15 O -0.937 6.937 16 C -0.688 4.688 17 C 0.041 3.959 18 C -0.550 4.550 19 H 0.087 0.913 20 C -0.122 4.122 21 N -0.511 5.511 22 Si 0.718 3.282 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.209 1.209 26 C -0.246 4.246 27 C -0.181 4.181 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.242 0.758 38 H 0.150 0.850 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.019 13.695 -6.921 15.345 hybrid contribution 1.163 -0.630 -0.021 1.323 sum 1.182 13.065 -6.941 14.842 Atomic orbital electron populations 1.20393 0.86999 1.03809 1.03407 1.22097 0.96808 0.90018 0.98467 1.77257 0.86478 1.22235 1.26223 1.46125 1.07262 1.04765 1.60380 0.71939 1.20911 0.96887 0.84923 1.00007 1.20607 0.92702 0.98957 1.03814 1.19843 0.91378 0.96077 1.17765 1.18820 0.88658 0.90970 0.89222 0.89242 1.22309 1.01403 1.03162 0.95500 1.56225 1.40547 1.36900 1.54706 1.05179 0.77099 0.72487 0.74983 1.93501 1.47351 1.85099 1.70682 1.93536 1.87119 1.55701 1.57373 1.29978 1.19886 1.05419 1.13474 1.18286 1.00617 0.91803 0.85161 1.20574 0.93327 0.99593 1.41505 0.91286 1.24937 0.95272 0.97973 0.94056 1.69990 0.98445 1.37421 1.45265 0.86530 0.78637 0.84609 0.78390 1.19210 1.20630 1.20918 1.23196 0.94352 1.01096 1.05954 1.22546 0.92367 1.00493 1.02695 0.90051 0.90599 0.89650 0.89735 0.90813 0.88630 0.90321 0.92389 0.92037 0.75848 0.85042 0.88353 0.92859 0.90703 0.89533 0.89623 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 8.63 36.01 0.31 -0.58 16 2 C 0.09 1.18 7.11 -82.40 -0.59 0.60 16 3 N -0.30 -3.91 12.70 33.67 0.43 -3.48 16 4 N -0.48 -5.12 7.36 33.48 0.25 -4.88 16 5 H 0.44 3.25 8.96 -182.61 -1.64 1.61 16 6 C 0.10 1.15 7.21 -82.26 -0.59 0.56 16 7 C -0.10 -0.92 10.17 36.01 0.37 -0.55 16 8 C -0.24 -3.05 5.05 -105.05 -0.53 -3.58 16 9 C 0.23 3.21 2.76 -69.08 -0.19 3.02 16 10 H 0.09 1.26 5.97 -51.93 -0.31 0.95 16 11 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 12 N -1.13 -17.08 5.22 -5.88 -0.03 -17.11 16 13 S 2.61 51.87 5.11 -107.50 -0.55 51.33 16 14 O -0.98 -21.36 18.08 -57.54 -1.04 -22.40 16 15 O -0.95 -21.71 16.79 -57.54 -0.97 -22.67 16 16 C -0.55 -11.42 5.76 37.16 0.21 -11.21 16 17 C 0.04 1.05 1.32 -155.66 -0.21 0.84 16 18 C -0.51 -13.77 8.19 -34.44 -0.28 -14.05 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C 0.08 2.19 5.38 -17.82 -0.10 2.10 16 21 N -0.88 -23.32 12.98 55.43 0.72 -22.60 16 22 Si 0.89 20.99 29.55 -169.99 -5.02 15.97 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.21 -4.58 9.96 -26.70 -0.27 -4.85 16 27 C -0.14 -3.21 9.49 -26.69 -0.25 -3.46 16 28 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.82 5.91 -51.93 -0.31 0.51 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.98 7.01 -51.93 -0.36 0.61 16 34 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 35 H 0.06 0.67 6.66 -51.93 -0.35 0.32 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.41 5.43 5.77 -34.47 -0.20 5.23 16 38 H 0.13 2.74 7.64 -51.92 -0.40 2.34 16 39 H 0.10 1.76 8.09 -51.93 -0.42 1.34 16 40 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 43 H 0.09 2.04 8.14 -51.93 -0.42 1.61 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -33.58 372.05 -10.06 -43.64 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -7.69 Total: 9.55 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: -1.76 Total: -32.95 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 1.36 Total: -48.07 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -2.01 Total: -45.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 51.87 SS G_CDS: -0.55 Total: 51.33 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.58 -10.06 -43.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601439229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.095 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds