Wall clock time and date at job start Tue Mar 31 2020 15:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30836 * 125.90232 * 2 1 4 4 N 1.40083 * 108.20555 * 179.81543 * 3 2 1 5 5 H 0.96996 * 126.03856 * 180.23544 * 4 3 2 6 6 C 1.34948 * 107.92794 * 0.35699 * 4 3 2 7 7 C 1.50701 * 126.12896 * 179.90945 * 6 4 3 8 8 C 1.35321 * 107.74365 * 359.64433 * 6 4 3 9 9 C 1.50704 * 126.03916 * 180.24941 * 8 6 4 10 10 H 1.08998 * 109.46910 * 14.99552 * 9 8 6 11 11 C 1.53003 * 109.46666 * 255.00108 * 9 8 6 12 12 N 1.46497 * 109.46973 * 135.00101 * 9 8 6 13 13 S 1.65604 * 119.99759 * 214.99698 * 12 9 8 14 14 O 1.42101 * 104.27681 * 181.07293 * 13 12 9 15 15 O 1.42104 * 104.27540 * 308.92818 * 13 12 9 16 16 C 1.81401 * 104.44912 * 65.00157 * 13 12 9 17 17 C 1.52997 * 109.47043 * 173.66605 * 16 13 12 18 18 C 1.50703 * 115.54992 * 65.18907 * 17 16 13 19 19 H 1.08002 * 120.00201 * 264.78676 * 18 17 16 20 20 C 1.37880 * 119.99970 * 84.78379 * 18 17 16 21 21 N 1.31515 * 119.99941 * 352.23950 * 20 18 17 22 22 Si 1.86797 * 119.99926 * 172.23772 * 20 18 17 23 23 H 1.48494 * 109.47489 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46920 * 120.00145 * 22 20 18 25 25 H 1.48504 * 109.47258 * 240.00037 * 22 20 18 26 26 C 1.52996 * 117.50082 * 279.51803 * 17 16 13 27 27 C 1.52999 * 117.49944 * 210.85742 * 17 16 13 28 28 H 1.09000 * 109.47303 * 269.96511 * 1 2 3 29 29 H 1.09006 * 109.46621 * 29.96526 * 1 2 3 30 30 H 1.09003 * 109.47110 * 149.96092 * 1 2 3 31 31 H 1.09004 * 109.47186 * 269.68593 * 7 6 4 32 32 H 1.08991 * 109.47351 * 29.69005 * 7 6 4 33 33 H 1.09003 * 109.47207 * 149.68898 * 7 6 4 34 34 H 1.09001 * 109.46843 * 180.02562 * 11 9 8 35 35 H 1.08999 * 109.47451 * 299.99670 * 11 9 8 36 36 H 1.08991 * 109.47564 * 60.00123 * 11 9 8 37 37 H 0.96999 * 120.00341 * 35.00097 * 12 9 8 38 38 H 1.08999 * 109.46658 * 293.66387 * 16 13 12 39 39 H 1.08993 * 109.47122 * 53.66287 * 16 13 12 40 40 H 0.97005 * 119.99876 * 185.01741 * 21 20 18 41 41 H 1.09003 * 117.49519 * 0.02562 * 26 17 16 42 42 H 1.09003 * 117.50134 * 145.01633 * 26 17 16 43 43 H 1.09000 * 117.50100 * 214.98050 * 27 17 16 44 44 H 1.09005 * 117.49843 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0043 5 1 4.3908 1.2077 0.0085 6 6 3.6142 -0.7155 -0.0011 7 6 4.8350 -1.5991 -0.0012 8 6 2.3271 -1.1331 -0.0006 9 6 1.8598 -2.5659 -0.0003 10 1 2.6910 -3.2190 0.2654 11 6 1.3463 -2.9350 -1.3935 12 7 0.7802 -2.7272 0.9768 13 16 0.6429 -4.1376 1.8337 14 8 -0.5070 -3.9438 2.6456 15 8 0.6766 -5.1548 0.8420 16 6 2.1411 -4.1943 2.8550 17 6 2.0583 -5.3817 3.8163 18 6 2.0587 -6.7429 3.1694 19 1 1.1240 -7.2432 2.9636 20 6 3.2524 -7.3494 2.8404 21 7 4.3806 -6.6823 2.9484 22 14 3.2670 -9.1186 2.2412 23 1 1.8777 -9.6417 2.2083 24 1 3.8487 -9.1740 0.8759 25 1 4.0865 -9.9465 3.1623 26 6 1.2268 -5.2043 5.0882 27 6 2.7547 -5.2434 5.1715 28 1 -0.3634 -0.0006 1.0277 29 1 -0.3633 0.8904 -0.5133 30 1 -0.3633 -0.8897 -0.5145 31 1 5.1291 -1.8125 -1.0288 32 1 5.6513 -1.0911 0.5123 33 1 4.6077 -2.5329 0.5131 34 1 1.0079 -3.9712 -1.3932 35 1 0.5151 -2.2819 -1.6593 36 1 2.1494 -2.8150 -2.1204 37 1 0.1458 -2.0079 1.1217 38 1 3.0145 -4.3070 2.2127 39 1 2.2267 -3.2699 3.4260 40 1 5.2116 -7.0831 2.6486 41 1 0.7384 -4.2417 5.2400 42 1 0.6803 -6.0722 5.4574 43 1 3.2129 -6.1370 5.5955 44 1 3.2723 -4.3066 5.3781 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601439229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:30 Heat of formation + Delta-G solvation = -11.218654 kcal Electronic energy + Delta-G solvation = -27272.427090 eV Core-core repulsion = 23546.009838 eV Total energy + Delta-G solvation = -3726.417251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.41072 -38.53947 -37.97405 -37.35337 -36.67127 -34.30822 -34.04278 -32.29070 -30.45227 -29.83128 -28.84118 -27.75193 -27.44223 -23.89731 -22.97530 -21.57475 -21.15261 -20.57288 -20.11941 -18.41605 -18.39252 -18.18684 -16.82127 -16.71869 -16.59821 -16.19753 -15.85542 -15.46173 -15.21047 -14.84739 -14.64176 -14.28913 -14.13398 -13.74288 -13.72022 -13.63784 -13.45589 -13.26908 -13.16661 -13.08040 -12.91034 -12.83255 -12.81823 -12.80353 -12.40936 -12.39555 -12.19888 -12.12076 -11.88129 -11.52727 -11.31616 -10.83900 -10.57752 -10.50125 -10.19360 -9.84690 -9.39305 -8.15396 -6.29265 -0.44498 0.87534 1.40308 1.44176 1.55047 1.62962 1.95869 2.16545 2.43487 2.99410 3.11955 3.40953 3.50906 3.64187 3.71536 3.96408 4.10984 4.18640 4.19588 4.33311 4.47124 4.50183 4.51777 4.58627 4.63266 4.74075 4.75658 4.86784 4.87773 4.94366 4.99396 5.08268 5.14646 5.19224 5.23046 5.37849 5.42511 5.49418 5.60312 5.69973 5.76377 6.20289 6.26776 6.42876 6.72769 6.76483 7.42685 8.91973 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.004523 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.459758 B = 6189.644907 C = 6578.881568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.086 3.914 3 N -0.323 5.323 4 N -0.468 5.468 5 H 0.450 0.550 6 C 0.110 3.890 7 C -0.104 4.104 8 C -0.259 4.259 9 C 0.229 3.771 10 H 0.085 0.915 11 C -0.164 4.164 12 N -1.110 6.110 13 S 2.622 3.378 14 O -0.998 6.998 15 O -0.983 6.983 16 C -0.552 4.552 17 C 0.014 3.986 18 C -0.532 4.532 19 H 0.048 0.952 20 C 0.047 3.953 21 N -0.889 5.889 22 Si 0.934 3.066 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.200 4.200 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.418 0.582 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.266 0.734 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 14.620 -7.208 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 N -0.147 5.147 4 N -0.177 5.177 5 H 0.297 0.703 6 C -0.020 4.020 7 C -0.162 4.162 8 C -0.272 4.272 9 C 0.121 3.879 10 H 0.103 0.897 11 C -0.223 4.223 12 N -0.871 5.871 13 S 2.719 3.281 14 O -0.988 6.988 15 O -0.973 6.973 16 C -0.684 4.684 17 C 0.012 3.988 18 C -0.570 4.570 19 H 0.066 0.934 20 C -0.156 4.156 21 N -0.526 5.526 22 Si 0.759 3.241 23 H -0.200 1.200 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.238 4.238 27 C -0.177 4.177 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.255 0.745 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.781 15.105 -7.300 16.795 hybrid contribution 0.956 -1.008 0.086 1.392 sum 1.738 14.097 -7.214 15.931 Atomic orbital electron populations 1.20510 0.85825 1.04624 1.04120 1.22429 0.97804 0.89810 0.98028 1.77218 0.87417 1.22774 1.27246 1.46148 1.07240 1.04837 1.59518 0.70298 1.21212 0.97186 0.85298 0.98319 1.20708 0.92361 0.98047 1.05076 1.19767 0.92233 0.95285 1.19892 1.18921 0.87991 0.91938 0.89001 0.89729 1.22303 1.02537 1.01979 0.95526 1.55781 1.41324 1.35765 1.54208 1.04429 0.76400 0.72806 0.74492 1.93460 1.48332 1.85663 1.71389 1.93493 1.87438 1.57941 1.58392 1.29872 1.20003 1.05333 1.13230 1.18414 1.02413 0.91822 0.86176 1.20699 0.92669 1.01354 1.42246 0.93409 1.25452 0.95181 1.00605 0.94394 1.70019 0.98630 1.38302 1.45604 0.85879 0.78243 0.81524 0.78441 1.19958 1.19944 1.19942 1.23247 0.94114 1.02019 1.04379 1.22499 0.92872 1.00632 1.01710 0.89337 0.89408 0.89256 0.87978 0.88760 0.89968 0.92546 0.91069 0.90304 0.74528 0.85521 0.85552 0.92494 0.88591 0.89939 0.91480 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 8.63 71.24 0.61 -1.11 16 2 C 0.09 2.03 7.11 43.10 0.31 2.34 16 3 N -0.32 -7.85 12.70 -47.38 -0.60 -8.45 16 4 N -0.47 -9.00 7.36 -48.00 -0.35 -9.35 16 5 H 0.45 5.61 8.96 -213.34 -1.91 3.70 16 6 C 0.11 2.26 7.21 41.41 0.30 2.56 16 7 C -0.10 -1.62 10.17 71.24 0.72 -0.89 16 8 C -0.26 -6.19 5.05 -20.14 -0.10 -6.29 16 9 C 0.23 6.10 2.76 44.25 0.12 6.22 16 10 H 0.08 2.33 5.97 -2.39 -0.01 2.32 16 11 C -0.16 -4.10 9.48 71.98 0.68 -3.42 16 12 N -1.11 -32.52 5.22 -172.52 -0.90 -33.42 16 13 S 2.62 103.58 5.11 -56.49 -0.29 103.29 16 14 O -1.00 -43.16 18.08 -127.65 -2.31 -45.47 16 15 O -0.98 -45.70 16.79 -127.65 -2.14 -47.84 16 16 C -0.55 -22.25 5.76 71.98 0.41 -21.83 16 17 C 0.01 0.66 1.32 -52.93 -0.07 0.59 16 18 C -0.53 -28.93 8.19 25.60 0.21 -28.72 16 19 H 0.05 2.72 7.83 -2.91 -0.02 2.70 16 20 C 0.05 2.50 5.38 84.66 0.46 2.95 16 21 N -0.89 -47.12 12.98 21.45 0.28 -46.84 16 22 Si 0.93 43.01 29.55 68.60 2.03 45.04 16 23 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 C -0.20 -8.61 9.96 30.62 0.30 -8.31 16 27 C -0.14 -6.12 9.49 30.62 0.29 -5.83 16 28 H 0.09 1.50 7.73 -2.39 -0.02 1.49 16 29 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.09 1.56 5.91 -2.39 -0.01 1.55 16 31 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.56 7.01 -2.39 -0.02 1.54 16 34 H 0.06 1.66 7.42 -2.39 -0.02 1.64 16 35 H 0.07 1.55 6.66 -2.39 -0.02 1.53 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.42 10.56 5.77 -96.74 -0.56 10.00 16 38 H 0.13 5.22 7.64 -2.39 -0.02 5.21 16 39 H 0.13 4.26 8.09 -2.39 -0.02 4.24 16 40 H 0.27 13.30 8.32 -92.70 -0.77 12.53 16 41 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 42 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 Total: -1.00 -70.93 372.05 -1.47 -72.40 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -1.43 Total: 32.38 kcal Atomic # 6 Polarization: -65.99 SS G_CDS: 4.25 Total: -61.74 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -1.58 Total: -98.06 kcal Atomic # 8 Polarization: -88.86 SS G_CDS: -4.45 Total: -93.31 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 103.58 SS G_CDS: -0.29 Total: 103.29 kcal Total: -70.93 -1.47 -72.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601439229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.178 kcal (2) G-P(sol) polarization free energy of solvation -70.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds