Wall clock time and date at job start Tue Mar 31 2020 15:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39758 * 125.83379 * 2 1 4 4 C 1.36108 * 107.82615 * 180.02562 * 3 2 1 5 5 N 1.39480 * 126.21779 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99819 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99801 * 179.97438 * 6 5 4 9 9 H 1.09001 * 110.83087 * 59.29522 * 8 6 5 10 10 C 1.54706 * 110.93875 * 295.58392 * 8 6 5 11 11 O 1.43872 * 102.74287 * 267.11883 * 10 8 6 12 12 C 1.36142 * 109.24467 * 332.25329 * 11 10 8 13 13 C 1.39277 * 129.88888 * 198.38277 * 12 11 10 14 14 C 1.37932 * 120.24138 * 180.97180 * 13 12 11 15 15 C 1.38287 * 120.35160 * 0.03864 * 14 13 12 16 16 C 1.38354 * 119.76628 * 359.81436 * 15 14 13 17 17 C 1.37745 * 119.97376 * 0.02562 * 16 15 14 18 18 N 1.35265 * 107.56962 * 359.97438 * 4 3 2 19 19 C 1.46495 * 126.05131 * 179.73218 * 18 4 3 20 20 C 1.50704 * 109.46917 * 90.00227 * 19 18 4 21 21 H 1.07996 * 119.99789 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99975 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00217 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99911 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47290 * 89.99764 * 24 22 20 26 26 H 1.48497 * 109.47221 * 210.00009 * 24 22 20 27 27 H 1.48503 * 109.46841 * 329.99791 * 24 22 20 28 28 N 1.30845 * 125.84224 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47266 * 90.00036 * 1 2 3 30 30 H 1.09005 * 109.47037 * 209.99685 * 1 2 3 31 31 H 1.09000 * 109.47039 * 329.99915 * 1 2 3 32 32 H 1.07999 * 126.09092 * 359.97438 * 3 2 1 33 33 H 0.97001 * 119.99909 * 179.97438 * 5 4 3 34 34 H 1.08999 * 110.74936 * 25.45530 * 10 8 6 35 35 H 1.08997 * 110.74856 * 148.80309 * 10 8 6 36 36 H 1.08002 * 119.88464 * 0.96902 * 13 12 11 37 37 H 1.08002 * 119.82519 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.11781 * 179.79055 * 15 14 13 39 39 H 1.07992 * 120.01275 * 179.97438 * 16 15 14 40 40 H 1.09000 * 109.47596 * 210.00544 * 19 18 4 41 41 H 1.09004 * 109.47027 * 330.01061 * 19 18 4 42 42 H 0.97005 * 120.00533 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 -0.0006 5 7 4.7513 1.5277 -0.0013 6 6 4.6156 2.8686 -0.0009 7 8 3.5095 3.3663 -0.0004 8 6 5.8383 3.7496 -0.0011 9 1 6.4566 3.5543 -0.8773 10 6 6.6520 3.5662 1.3018 11 8 6.1272 4.6014 2.1521 12 6 5.6710 5.6268 1.3814 13 6 5.4028 6.9501 1.7230 14 6 4.9214 7.8284 0.7747 15 6 4.7000 7.4038 -0.5226 16 6 4.9667 6.0916 -0.8708 17 6 5.4506 5.2137 0.0739 18 7 3.6093 -0.6403 -0.0004 19 6 4.7870 -1.5115 -0.0063 20 6 5.1982 -1.8101 1.4125 21 1 4.6379 -1.3929 2.2361 22 6 6.2896 -2.6157 1.6589 23 7 6.9715 -3.1240 0.6559 24 14 6.7988 -2.9864 3.4176 25 1 6.1017 -4.2106 3.8872 26 1 8.2671 -3.2008 3.4730 27 1 6.4323 -1.8423 4.2905 28 7 2.2732 -1.0607 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9901 2.1597 -0.0004 33 1 5.6358 1.1296 -0.0013 34 1 6.4718 2.5821 1.7344 35 1 7.7153 3.7194 1.1178 36 1 5.5723 7.2898 2.7340 37 1 4.7161 8.8533 1.0468 38 1 4.3197 8.0939 -1.2613 39 1 4.7949 5.7556 -1.8827 40 1 4.5474 -2.4431 -0.5189 41 1 5.6058 -1.0120 -0.5243 42 1 7.7396 -3.6906 0.8293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609587226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:52 Heat of formation + Delta-G solvation = 43.201733 kcal Electronic energy + Delta-G solvation = -27340.002915 eV Core-core repulsion = 23480.501557 eV Total energy + Delta-G solvation = -3859.501358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69492 -40.68226 -38.87982 -37.52081 -34.80281 -33.80720 -33.04988 -32.08936 -30.25300 -29.71902 -29.08892 -28.07053 -26.06756 -24.52652 -23.12235 -22.72375 -22.24298 -21.02128 -19.79007 -19.33846 -17.63929 -17.05240 -17.02818 -16.71406 -16.30799 -16.13408 -15.56769 -15.00008 -14.86706 -14.43529 -14.14354 -14.02414 -13.81831 -13.56803 -13.21605 -12.88192 -12.80469 -12.72619 -12.52612 -12.17151 -11.94646 -11.85527 -11.78319 -11.60636 -11.32067 -11.10427 -10.97271 -10.92205 -10.43278 -10.36922 -9.97577 -9.84644 -9.55048 -9.06258 -8.75928 -8.30767 -7.95356 -7.48168 -6.37292 -4.46059 1.09814 1.26137 2.15432 2.71197 2.98724 3.14258 3.14448 3.21755 3.26113 3.55564 3.56217 3.79354 3.98737 4.21337 4.29526 4.58321 4.65788 4.89898 4.94836 4.96153 5.11847 5.22279 5.26253 5.34016 5.38501 5.46590 5.61534 5.83463 6.01406 6.13480 6.14676 6.15454 6.23030 6.25328 6.33119 6.38206 6.43378 6.63018 6.79300 7.00309 7.01974 7.46778 7.53640 7.58305 7.75630 7.86304 8.22726 8.58383 8.67424 9.21966 10.69706 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.003926 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.384752 B = 7130.144037 C = 8854.448332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.294 4.294 4 C 0.301 3.699 5 N -0.639 5.639 6 C 0.528 3.472 7 O -0.497 6.497 8 C -0.096 4.096 9 H 0.129 0.871 10 C 0.060 3.940 11 O -0.298 6.298 12 C 0.115 3.885 13 C -0.142 4.142 14 C -0.081 4.081 15 C -0.152 4.152 16 C -0.049 4.049 17 C -0.150 4.150 18 N -0.344 5.344 19 C 0.256 3.744 20 C -0.541 4.541 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.890 5.890 24 Si 0.905 3.095 25 H -0.276 1.276 26 H -0.283 1.283 27 H -0.272 1.272 28 N -0.285 5.285 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.416 0.584 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 18.551 -3.030 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.326 4.326 4 C 0.079 3.921 5 N -0.286 5.286 6 C 0.313 3.687 7 O -0.369 6.369 8 C -0.118 4.118 9 H 0.146 0.854 10 C -0.016 4.016 11 O -0.211 6.211 12 C 0.070 3.930 13 C -0.161 4.161 14 C -0.099 4.099 15 C -0.170 4.170 16 C -0.068 4.068 17 C -0.151 4.151 18 N -0.129 5.129 19 C 0.139 3.861 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.732 3.268 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 N -0.110 5.110 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.178 0.822 33 H 0.252 0.748 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.457 17.419 -2.837 17.655 hybrid contribution 1.056 0.008 0.757 1.299 sum 0.599 17.427 -2.080 17.561 Atomic orbital electron populations 1.20022 0.87560 1.02477 1.02049 1.22027 0.96532 0.90997 1.01804 1.21266 0.89098 1.00449 1.21785 1.17893 0.87904 0.83341 1.02993 1.42730 1.08361 1.05381 1.72135 1.20064 0.90762 0.81154 0.76726 1.90661 1.26241 1.73596 1.46419 1.21513 0.95883 0.92255 1.02150 0.85351 1.23948 0.97948 0.92435 0.87236 1.86903 1.75474 1.26531 1.32231 1.19589 0.94786 0.89346 0.89292 1.20228 1.05472 0.89385 1.00972 1.20874 0.97120 0.99166 0.92752 1.21003 1.03450 0.95777 0.96774 1.20289 0.95308 0.92434 0.98722 1.20099 1.06749 0.93075 0.95179 1.49351 1.06554 1.02103 1.54909 1.19624 0.77796 0.89775 0.98938 1.21347 1.13247 1.32036 0.91354 0.91679 1.24929 0.95695 0.94828 0.98161 1.69912 1.19267 1.32573 1.30973 0.86367 0.77652 0.79194 0.83598 1.20173 1.20810 1.19619 1.77357 0.86117 1.21780 1.25736 0.91356 0.91468 0.91134 0.82223 0.74761 0.86569 0.88628 0.85411 0.85180 0.85431 0.85748 0.92519 0.93860 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.57 16 2 C 0.05 1.04 7.21 -82.44 -0.59 0.45 16 3 C -0.29 -6.11 9.58 -39.78 -0.38 -6.49 16 4 C 0.30 6.33 7.66 -153.15 -1.17 5.16 16 5 N -0.64 -10.94 5.23 -11.46 -0.06 -11.00 16 6 C 0.53 8.40 7.08 -10.99 -0.08 8.32 16 7 O -0.50 -9.39 13.27 5.55 0.07 -9.32 16 8 C -0.10 -1.15 3.52 -91.56 -0.32 -1.47 16 9 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 10 C 0.06 0.67 7.54 38.06 0.29 0.96 16 11 O -0.30 -4.19 11.11 -20.19 -0.22 -4.41 16 12 C 0.12 1.53 7.04 -38.96 -0.27 1.26 16 13 C -0.14 -1.59 10.06 -39.31 -0.40 -1.99 16 14 C -0.08 -0.76 10.02 -39.68 -0.40 -1.16 16 15 C -0.15 -1.47 10.07 -39.52 -0.40 -1.86 16 16 C -0.05 -0.55 10.03 -39.72 -0.40 -0.95 16 17 C -0.15 -1.90 4.93 -104.10 -0.51 -2.41 16 18 N -0.34 -8.01 3.60 -61.57 -0.22 -8.23 16 19 C 0.26 6.30 6.00 -5.19 -0.03 6.27 16 20 C -0.54 -14.33 9.39 -34.44 -0.32 -14.65 16 21 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 24 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 N -0.28 -6.65 12.56 33.65 0.42 -6.23 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.16 3.27 5.83 -52.49 -0.31 2.96 16 33 H 0.42 6.36 7.97 -40.82 -0.33 6.03 16 34 H 0.12 1.35 7.77 -51.93 -0.40 0.95 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.04 1.02 7.51 -51.93 -0.39 0.63 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -32.95 362.23 -8.75 -41.70 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.20 Total: 7.24 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -4.71 Total: -7.46 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.88 Total: -48.59 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.15 Total: -13.73 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.95 -8.75 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609587226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.904 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds