Wall clock time and date at job start Tue Mar 31 2020 15:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39758 * 125.83379 * 2 1 4 4 C 1.36108 * 107.82615 * 180.02562 * 3 2 1 5 5 N 1.39480 * 126.21779 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99819 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99801 * 179.97438 * 6 5 4 9 9 H 1.09001 * 110.83087 * 59.29522 * 8 6 5 10 10 C 1.54706 * 110.93875 * 295.58392 * 8 6 5 11 11 O 1.43872 * 102.74287 * 267.11883 * 10 8 6 12 12 C 1.36142 * 109.24467 * 332.25329 * 11 10 8 13 13 C 1.39277 * 129.88888 * 198.38277 * 12 11 10 14 14 C 1.37932 * 120.24138 * 180.97180 * 13 12 11 15 15 C 1.38287 * 120.35160 * 0.03864 * 14 13 12 16 16 C 1.38354 * 119.76628 * 359.81436 * 15 14 13 17 17 C 1.37745 * 119.97376 * 0.02562 * 16 15 14 18 18 N 1.35265 * 107.56962 * 359.97438 * 4 3 2 19 19 C 1.46495 * 126.05131 * 179.73218 * 18 4 3 20 20 C 1.50704 * 109.46917 * 90.00227 * 19 18 4 21 21 H 1.07996 * 119.99789 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99975 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00217 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99911 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47290 * 89.99764 * 24 22 20 26 26 H 1.48497 * 109.47221 * 210.00009 * 24 22 20 27 27 H 1.48503 * 109.46841 * 329.99791 * 24 22 20 28 28 N 1.30845 * 125.84224 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47266 * 90.00036 * 1 2 3 30 30 H 1.09005 * 109.47037 * 209.99685 * 1 2 3 31 31 H 1.09000 * 109.47039 * 329.99915 * 1 2 3 32 32 H 1.07999 * 126.09092 * 359.97438 * 3 2 1 33 33 H 0.97001 * 119.99909 * 179.97438 * 5 4 3 34 34 H 1.08999 * 110.74936 * 25.45530 * 10 8 6 35 35 H 1.08997 * 110.74856 * 148.80309 * 10 8 6 36 36 H 1.08002 * 119.88464 * 0.96902 * 13 12 11 37 37 H 1.08002 * 119.82519 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.11781 * 179.79055 * 15 14 13 39 39 H 1.07992 * 120.01275 * 179.97438 * 16 15 14 40 40 H 1.09000 * 109.47596 * 210.00544 * 19 18 4 41 41 H 1.09004 * 109.47027 * 330.01061 * 19 18 4 42 42 H 0.97005 * 120.00533 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 -0.0006 5 7 4.7513 1.5277 -0.0013 6 6 4.6156 2.8686 -0.0009 7 8 3.5095 3.3663 -0.0004 8 6 5.8383 3.7496 -0.0011 9 1 6.4566 3.5543 -0.8773 10 6 6.6520 3.5662 1.3018 11 8 6.1272 4.6014 2.1521 12 6 5.6710 5.6268 1.3814 13 6 5.4028 6.9501 1.7230 14 6 4.9214 7.8284 0.7747 15 6 4.7000 7.4038 -0.5226 16 6 4.9667 6.0916 -0.8708 17 6 5.4506 5.2137 0.0739 18 7 3.6093 -0.6403 -0.0004 19 6 4.7870 -1.5115 -0.0063 20 6 5.1982 -1.8101 1.4125 21 1 4.6379 -1.3929 2.2361 22 6 6.2896 -2.6157 1.6589 23 7 6.9715 -3.1240 0.6559 24 14 6.7988 -2.9864 3.4176 25 1 6.1017 -4.2106 3.8872 26 1 8.2671 -3.2008 3.4730 27 1 6.4323 -1.8423 4.2905 28 7 2.2732 -1.0607 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9901 2.1597 -0.0004 33 1 5.6358 1.1296 -0.0013 34 1 6.4718 2.5821 1.7344 35 1 7.7153 3.7194 1.1178 36 1 5.5723 7.2898 2.7340 37 1 4.7161 8.8533 1.0468 38 1 4.3197 8.0939 -1.2613 39 1 4.7949 5.7556 -1.8827 40 1 4.5474 -2.4431 -0.5189 41 1 5.6058 -1.0120 -0.5243 42 1 7.7396 -3.6906 0.8293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609587226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:51 Heat of formation + Delta-G solvation = 23.259073 kcal Electronic energy + Delta-G solvation = -27340.867693 eV Core-core repulsion = 23480.501557 eV Total energy + Delta-G solvation = -3860.366136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.79812 -42.12408 -40.21096 -38.35373 -36.33417 -35.63846 -34.06498 -33.79855 -31.14400 -30.86690 -30.46720 -29.53857 -27.83478 -25.60253 -24.76389 -23.85970 -23.15349 -22.23648 -21.31326 -20.74117 -18.94960 -18.73619 -18.23038 -17.97512 -17.47216 -17.30564 -16.66273 -16.44609 -16.31428 -15.98537 -15.49181 -15.32864 -14.89429 -14.56368 -14.44814 -14.40938 -14.08161 -14.01208 -13.64423 -13.54780 -13.41393 -13.15855 -12.97314 -12.81121 -12.73801 -12.66578 -12.31869 -12.20223 -11.96698 -11.78108 -11.71361 -11.48434 -10.99053 -10.77855 -9.88985 -9.66987 -9.17066 -9.12184 -8.37946 -6.55293 0.25867 0.43200 0.70736 1.27878 1.35217 1.38354 1.48265 1.54588 1.98022 2.13259 2.25167 2.33325 2.77307 2.92689 3.05149 3.40104 3.50611 3.79798 3.83098 4.13035 4.19027 4.23451 4.32707 4.40651 4.51947 4.56459 4.59309 4.66724 4.68984 4.80583 4.83720 4.87062 4.92017 5.05131 5.17701 5.20816 5.36666 5.44411 5.49642 5.55535 5.65385 5.75198 5.92031 6.08302 6.17076 6.24020 6.54888 6.86023 6.98647 7.16926 8.68479 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.003926 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.384752 B = 7130.144037 C = 8854.448332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.308 4.308 4 C 0.300 3.700 5 N -0.635 5.635 6 C 0.529 3.471 7 O -0.527 6.527 8 C -0.087 4.087 9 H 0.164 0.836 10 C 0.058 3.942 11 O -0.323 6.323 12 C 0.086 3.914 13 C -0.154 4.154 14 C -0.077 4.077 15 C -0.150 4.150 16 C -0.063 4.063 17 C -0.168 4.168 18 N -0.365 5.365 19 C 0.272 3.728 20 C -0.557 4.557 21 H 0.045 0.955 22 C 0.031 3.969 23 N -0.911 5.911 24 Si 0.966 3.034 25 H -0.278 1.278 26 H -0.267 1.267 27 H -0.272 1.272 28 N -0.330 5.330 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.164 0.836 33 H 0.423 0.577 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.135 0.865 40 H 0.028 0.972 41 H 0.051 0.949 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 20.493 -2.977 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.340 4.340 4 C 0.078 3.922 5 N -0.284 5.284 6 C 0.316 3.684 7 O -0.401 6.401 8 C -0.108 4.108 9 H 0.181 0.819 10 C -0.017 4.017 11 O -0.238 6.238 12 C 0.041 3.959 13 C -0.173 4.173 14 C -0.095 4.095 15 C -0.168 4.168 16 C -0.081 4.081 17 C -0.169 4.169 18 N -0.150 5.150 19 C 0.153 3.847 20 C -0.595 4.595 21 H 0.064 0.936 22 C -0.171 4.171 23 N -0.549 5.549 24 Si 0.790 3.210 25 H -0.204 1.204 26 H -0.191 1.191 27 H -0.197 1.197 28 N -0.155 5.155 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.181 0.819 33 H 0.261 0.739 34 H 0.125 0.875 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.181 0.819 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.098 19.375 -2.796 19.576 hybrid contribution 0.874 -0.475 0.704 1.218 sum 0.777 18.901 -2.092 19.032 Atomic orbital electron populations 1.20226 0.83924 1.03843 1.03933 1.22870 0.98744 0.89992 0.99005 1.21449 0.89246 1.00714 1.22623 1.18272 0.89443 0.82882 1.01645 1.42901 1.07708 1.05656 1.72105 1.20909 0.91827 0.80631 0.75026 1.90627 1.27936 1.73915 1.47651 1.21574 0.94193 0.91113 1.03933 0.81911 1.24126 0.99586 0.91608 0.86406 1.86847 1.76098 1.27352 1.33492 1.19946 0.96236 0.90038 0.89699 1.20592 1.05469 0.89081 1.02129 1.21300 0.95555 1.00351 0.92262 1.21418 1.02218 0.95588 0.97561 1.20600 0.95272 0.93130 0.99102 1.20266 1.07872 0.93340 0.95451 1.49177 1.06343 1.02755 1.56753 1.19253 0.78571 0.89029 0.97825 1.21388 1.13675 1.32838 0.91594 0.93619 1.25621 0.95378 0.94249 1.01820 1.69975 1.19563 1.32695 1.32682 0.85438 0.77975 0.78578 0.79002 1.20363 1.19146 1.19676 1.77306 0.86457 1.23525 1.28196 0.89085 0.90807 0.89011 0.81858 0.73887 0.87515 0.85236 0.84364 0.81927 0.82596 0.84719 0.95438 0.93106 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.75 10.44 71.24 0.74 -1.00 16 2 C 0.06 2.41 7.21 43.07 0.31 2.72 16 3 C -0.31 -12.93 9.58 22.14 0.21 -12.71 16 4 C 0.30 12.89 7.66 131.31 1.01 13.89 16 5 N -0.64 -22.00 5.23 -308.56 -1.61 -23.61 16 6 C 0.53 16.75 7.08 87.66 0.62 17.37 16 7 O -0.53 -19.98 13.27 -3.07 -0.04 -20.02 16 8 C -0.09 -1.98 3.52 -11.40 -0.04 -2.02 16 9 H 0.16 2.48 8.14 -2.39 -0.02 2.46 16 10 C 0.06 1.26 7.54 72.56 0.55 1.80 16 11 O -0.32 -9.07 11.11 -95.17 -1.06 -10.13 16 12 C 0.09 2.23 7.04 22.67 0.16 2.39 16 13 C -0.15 -3.26 10.06 22.45 0.23 -3.04 16 14 C -0.08 -1.25 10.02 22.21 0.22 -1.03 16 15 C -0.15 -2.50 10.07 22.31 0.22 -2.27 16 16 C -0.06 -1.31 10.03 22.18 0.22 -1.09 16 17 C -0.17 -4.09 4.93 -19.53 -0.10 -4.18 16 18 N -0.36 -17.54 3.60 -348.71 -1.26 -18.80 16 19 C 0.27 13.85 6.00 85.64 0.51 14.36 16 20 C -0.56 -30.16 9.39 25.60 0.24 -29.92 16 21 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 22 C 0.03 1.64 5.46 84.66 0.46 2.11 16 23 N -0.91 -48.99 13.29 21.45 0.28 -48.71 16 24 Si 0.97 41.73 29.54 68.60 2.03 43.75 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 N -0.33 -15.79 12.56 -47.45 -0.60 -16.39 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.16 6.71 5.83 -2.91 -0.02 6.70 16 33 H 0.42 13.08 7.97 -92.71 -0.74 12.35 16 34 H 0.11 2.48 7.77 -2.39 -0.02 2.46 16 35 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 37 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 2.46 7.51 -2.38 -0.02 2.44 16 42 H 0.28 13.81 8.31 -92.70 -0.77 13.04 16 Total: -1.00 -72.82 362.23 3.65 -69.18 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.32 Total: 27.36 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.58 Total: -2.64 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -3.18 Total: -107.51 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.10 Total: -30.15 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -72.82 3.65 -69.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609587226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.437 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds