Wall clock time and date at job start Tue Mar 31 2020 15:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39758 * 125.83964 * 2 1 4 4 C 1.36107 * 107.82646 * 180.14398 * 3 2 1 5 5 N 1.39475 * 126.21605 * 179.84305 * 4 3 2 6 6 C 1.34778 * 119.99706 * 359.68640 * 5 4 3 7 7 O 1.21286 * 120.00388 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99917 * 179.97438 * 6 5 4 9 9 H 1.09001 * 110.83651 * 297.73934 * 8 6 5 10 10 C 1.54710 * 110.94044 * 61.45525 * 8 6 5 11 11 O 1.43765 * 102.79596 * 92.79125 * 10 8 6 12 12 C 1.36141 * 109.28442 * 27.55259 * 11 10 8 13 13 C 1.39291 * 129.87709 * 161.44000 * 12 11 10 14 14 C 1.37928 * 120.23762 * 179.56101 * 13 12 11 15 15 C 1.38282 * 120.35673 * 0.02562 * 14 13 12 16 16 C 1.38348 * 119.76484 * 0.19871 * 15 14 13 17 17 C 1.37744 * 119.97669 * 359.96811 * 16 15 14 18 18 N 1.35258 * 107.56911 * 359.57950 * 4 3 2 19 19 C 1.46502 * 126.04950 * 180.30118 * 18 4 3 20 20 C 1.50694 * 109.47387 * 89.99472 * 19 18 4 21 21 H 1.08005 * 119.99599 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00417 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00179 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99501 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47125 * 90.00308 * 24 22 20 26 26 H 1.48503 * 109.46968 * 209.99494 * 24 22 20 27 27 H 1.48498 * 109.47616 * 330.00115 * 24 22 20 28 28 N 1.30852 * 125.83673 * 179.66568 * 2 1 3 29 29 H 1.09000 * 109.47511 * 270.30569 * 1 2 3 30 30 H 1.09004 * 109.47072 * 30.30402 * 1 2 3 31 31 H 1.09002 * 109.47653 * 150.30211 * 1 2 3 32 32 H 1.08002 * 126.08768 * 359.97438 * 3 2 1 33 33 H 0.96998 * 120.00563 * 179.68722 * 5 4 3 34 34 H 1.08995 * 110.74808 * 211.11712 * 10 8 6 35 35 H 1.09003 * 110.74960 * 334.47024 * 10 8 6 36 36 H 1.08003 * 119.87755 * 359.58377 * 13 12 11 37 37 H 1.08001 * 119.81873 * 180.02562 * 14 13 12 38 38 H 1.08003 * 120.11855 * 180.17220 * 15 14 13 39 39 H 1.08000 * 120.01281 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.47240 * 210.00629 * 19 18 4 41 41 H 1.09007 * 109.46523 * 330.00174 * 19 18 4 42 42 H 0.97003 * 119.99677 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0033 5 7 4.7512 1.5274 -0.0074 6 6 4.6156 2.8683 -0.0150 7 8 3.5096 3.3660 -0.0176 8 6 5.8384 3.7493 -0.0189 9 1 6.4295 3.5962 0.8841 10 6 6.6916 3.5053 -1.2862 11 8 6.1935 4.4962 -2.2010 12 6 5.7091 5.5556 -1.4963 13 6 5.4527 6.8609 -1.9095 14 6 4.9471 7.7847 -1.0188 15 6 4.6908 7.4246 0.2914 16 6 4.9471 6.1314 0.7110 17 6 5.4552 5.2081 -0.1759 18 7 3.6092 -0.6404 0.0042 19 6 4.7869 -1.5117 0.0102 20 6 5.1895 -1.8025 1.4329 21 1 4.6243 -1.3808 2.2510 22 6 6.2788 -2.6076 1.6904 23 7 6.6298 -2.8618 2.9321 24 14 7.2559 -3.3375 0.2755 25 1 8.3479 -2.4056 -0.1046 26 1 7.8383 -4.6376 0.6948 27 1 6.3585 -3.5494 -0.8885 28 7 2.2731 -1.0608 0.0062 29 1 -0.3634 0.0055 1.0276 30 1 -0.3633 0.8873 -0.5186 31 1 -0.3634 -0.8927 -0.5091 32 1 1.9902 2.1597 -0.0004 33 1 5.6358 1.1294 -0.0050 34 1 7.7487 3.6692 -1.0774 35 1 6.5251 2.5013 -1.6765 36 1 5.6501 7.1504 -2.9311 37 1 4.7503 8.7948 -1.3466 38 1 4.2923 8.1503 0.9849 39 1 4.7488 5.8459 1.7335 40 1 4.5503 -2.4460 -0.4988 41 1 5.6088 -1.0150 -0.5056 42 1 7.3964 -3.4280 3.1132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609587227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:56 Heat of formation + Delta-G solvation = 49.409693 kcal Electronic energy + Delta-G solvation = -27318.891867 eV Core-core repulsion = 23459.659707 eV Total energy + Delta-G solvation = -3859.232160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76114 -40.77017 -38.94330 -37.57265 -34.88099 -33.81585 -33.09537 -32.19894 -30.29459 -29.83601 -29.40795 -28.15881 -26.35679 -24.59820 -23.08026 -22.52827 -22.21516 -21.06947 -19.84886 -19.40894 -17.70287 -17.25953 -17.07714 -17.00900 -16.38746 -16.19775 -15.62453 -15.10525 -14.89692 -14.39552 -14.28747 -13.92536 -13.86425 -13.61771 -13.26540 -13.12691 -12.80013 -12.74350 -12.65256 -12.40422 -12.03410 -11.93432 -11.91664 -11.84660 -11.38682 -11.18377 -11.00789 -10.87818 -10.54587 -10.27598 -10.04149 -9.80725 -9.61466 -9.08957 -8.90984 -8.35257 -8.00848 -7.54705 -6.37965 -4.42765 1.06657 1.22939 2.09470 2.63276 2.90092 3.02324 3.07616 3.13562 3.14696 3.47536 3.51924 3.70276 3.93079 4.09913 4.23516 4.52624 4.62198 4.87269 4.88001 4.92423 5.06027 5.11956 5.20146 5.26086 5.34816 5.43996 5.55599 5.80320 5.98679 5.99814 6.06557 6.11848 6.17515 6.22264 6.25416 6.31022 6.32065 6.39173 6.58783 6.70298 6.96668 7.15373 7.38352 7.46863 7.70203 8.09576 8.23367 8.52070 8.68245 9.16479 10.74174 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.003771 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.739113 B = 7422.533318 C = 8851.391492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.056 3.944 3 C -0.291 4.291 4 C 0.304 3.696 5 N -0.640 5.640 6 C 0.529 3.471 7 O -0.496 6.496 8 C -0.098 4.098 9 H 0.132 0.868 10 C 0.060 3.940 11 O -0.299 6.299 12 C 0.113 3.887 13 C -0.142 4.142 14 C -0.081 4.081 15 C -0.150 4.150 16 C -0.048 4.048 17 C -0.149 4.149 18 N -0.343 5.343 19 C 0.230 3.770 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.081 3.919 23 N -0.882 5.882 24 Si 0.871 3.129 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.263 1.263 28 N -0.281 5.281 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.414 0.586 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.055 0.945 41 H 0.034 0.966 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 18.243 -7.822 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.323 4.323 4 C 0.083 3.917 5 N -0.287 5.287 6 C 0.315 3.685 7 O -0.367 6.367 8 C -0.119 4.119 9 H 0.150 0.850 10 C -0.015 4.015 11 O -0.213 6.213 12 C 0.068 3.932 13 C -0.160 4.160 14 C -0.099 4.099 15 C -0.168 4.168 16 C -0.066 4.066 17 C -0.150 4.150 18 N -0.128 5.128 19 C 0.111 3.889 20 C -0.585 4.585 21 H 0.099 0.901 22 C -0.124 4.124 23 N -0.519 5.519 24 Si 0.697 3.303 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.187 1.187 28 N -0.106 5.106 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.251 0.749 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.004 17.118 -7.938 18.869 hybrid contribution 1.320 -0.164 -0.228 1.349 sum 1.316 16.954 -8.166 18.864 Atomic orbital electron populations 1.20039 0.87369 1.02419 1.02351 1.22057 0.96614 0.90920 1.01360 1.21280 0.89001 1.00539 1.21437 1.17873 0.88006 0.83065 1.02806 1.42723 1.08225 1.05467 1.72286 1.20055 0.90789 0.81086 0.76609 1.90661 1.26235 1.73535 1.46314 1.21531 0.95677 0.92200 1.02514 0.84994 1.23895 0.98136 0.93132 0.86339 1.86855 1.75500 1.26546 1.32401 1.19569 0.94875 0.88812 0.89959 1.20220 1.05457 0.89269 1.01085 1.20879 0.97005 0.98938 0.93100 1.21023 1.03230 0.96213 0.96382 1.20325 0.94994 0.92082 0.99205 1.20086 1.06567 0.93238 0.95128 1.48899 1.06239 1.01933 1.55774 1.19935 0.79224 0.90073 0.99693 1.21192 1.14279 1.32737 0.90278 0.90056 1.24824 0.96637 0.95179 0.95791 1.69871 1.26817 1.36664 1.18506 0.86929 0.80754 0.79833 0.82810 1.19627 1.20303 1.18731 1.77372 0.85741 1.21713 1.25809 0.91111 0.91052 0.91458 0.82025 0.74934 0.88581 0.87115 0.85424 0.85147 0.85356 0.85597 0.92687 0.94825 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.56 16 2 C 0.06 1.11 7.21 -82.44 -0.59 0.52 16 3 C -0.29 -5.93 9.58 -39.78 -0.38 -6.31 16 4 C 0.30 6.28 7.66 -153.16 -1.17 5.11 16 5 N -0.64 -10.72 5.15 -11.46 -0.06 -10.77 16 6 C 0.53 8.28 7.12 -10.98 -0.08 8.20 16 7 O -0.50 -9.21 13.28 5.55 0.07 -9.13 16 8 C -0.10 -1.14 3.52 -91.56 -0.32 -1.46 16 9 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 10 C 0.06 0.61 7.53 38.06 0.29 0.90 16 11 O -0.30 -3.85 11.10 -20.19 -0.22 -4.07 16 12 C 0.11 1.43 7.04 -38.95 -0.27 1.16 16 13 C -0.14 -1.51 10.06 -39.30 -0.40 -1.91 16 14 C -0.08 -0.74 10.01 -39.68 -0.40 -1.14 16 15 C -0.15 -1.44 10.07 -39.52 -0.40 -1.84 16 16 C -0.05 -0.54 10.03 -39.72 -0.40 -0.94 16 17 C -0.15 -1.85 4.94 -104.10 -0.51 -2.37 16 18 N -0.34 -7.81 3.60 -61.57 -0.22 -8.03 16 19 C 0.23 5.30 5.07 -5.20 -0.03 5.27 16 20 C -0.55 -14.69 9.94 -34.44 -0.34 -15.03 16 21 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 22 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 23 N -0.88 -25.26 13.96 55.43 0.77 -24.48 16 24 Si 0.87 19.11 27.47 -169.99 -4.67 14.44 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 28 N -0.28 -6.45 12.56 33.65 0.42 -6.03 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.16 3.25 5.83 -52.49 -0.31 2.94 16 33 H 0.41 6.06 7.78 -40.82 -0.32 5.74 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.11 1.04 7.53 -51.93 -0.39 0.64 16 36 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.06 1.30 7.20 -51.93 -0.37 0.92 16 41 H 0.03 0.69 6.93 -51.92 -0.36 0.33 16 42 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -34.30 358.16 -8.38 -42.68 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.14 Total: 8.36 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -4.73 Total: -8.36 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.92 Total: -49.32 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.15 Total: -13.21 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.67 Total: 14.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.30 -8.38 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609587227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.091 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds