Wall clock time and date at job start Tue Mar 31 2020 15:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30845 * 125.89514 * 2 1 4 4 N 1.40089 * 108.20020 * 180.25211 * 3 2 1 5 5 C 1.46505 * 126.03096 * 179.73527 * 4 3 2 6 6 C 1.52997 * 109.47245 * 299.97826 * 5 4 3 7 7 C 1.52992 * 109.47163 * 59.98102 * 5 4 3 8 8 C 1.34942 * 107.93052 * 359.72037 * 4 3 2 9 9 C 1.50700 * 126.13066 * 180.02562 * 8 4 3 10 10 C 1.35320 * 107.74195 * 359.97438 * 8 4 3 11 11 S 1.76204 * 126.03597 * 180.02562 * 10 8 4 12 12 O 1.42103 * 106.40537 * 336.46157 * 11 10 8 13 13 O 1.42099 * 106.40041 * 203.53848 * 11 10 8 14 14 N 1.65603 * 107.21643 * 90.00391 * 11 10 8 15 15 C 1.36939 * 119.99907 * 89.99764 * 14 11 10 16 16 H 1.07997 * 119.99505 * 231.38179 * 15 14 11 17 17 C 1.38811 * 120.00181 * 51.38420 * 15 14 11 18 18 N 1.31625 * 119.99529 * 23.61781 * 17 15 14 19 19 Si 1.86793 * 120.00094 * 203.61417 * 17 15 14 20 20 H 1.48504 * 109.47067 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47610 * 300.00256 * 19 17 15 22 22 H 1.48504 * 109.47049 * 60.00469 * 19 17 15 23 23 C 1.46494 * 119.99954 * 269.99829 * 14 11 10 24 24 C 1.52996 * 117.50108 * 183.42648 * 23 14 11 25 25 C 1.53002 * 60.00155 * 252.50641 * 24 23 14 26 26 H 1.09002 * 109.47304 * 270.21194 * 1 2 3 27 27 H 1.08997 * 109.46840 * 30.21860 * 1 2 3 28 28 H 1.09005 * 109.46560 * 150.21503 * 1 2 3 29 29 H 1.09000 * 109.46672 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47052 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.47333 * 299.99738 * 6 5 4 32 32 H 1.08996 * 109.47493 * 60.00438 * 6 5 4 33 33 H 1.09001 * 109.47432 * 59.99793 * 7 5 4 34 34 H 1.08998 * 109.47064 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47355 * 299.99616 * 7 5 4 36 36 H 1.08998 * 109.47278 * 269.97427 * 9 8 4 37 37 H 1.09001 * 109.46835 * 29.97597 * 9 8 4 38 38 H 1.09003 * 109.46760 * 149.97325 * 9 8 4 39 39 H 0.96999 * 119.99829 * 174.95235 * 18 17 15 40 40 H 1.09007 * 115.55095 * 329.13126 * 23 14 11 41 41 H 1.09003 * 117.49923 * 359.97438 * 24 23 14 42 42 H 1.09003 * 117.50057 * 145.01654 * 24 23 14 43 43 H 1.08992 * 117.50000 * 252.50780 * 25 24 23 44 44 H 1.08997 * 117.51251 * 107.47369 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0059 5 6 4.7898 1.5010 -0.0133 6 6 4.7683 2.3815 -1.2643 7 6 4.7802 2.3867 1.2341 8 6 3.6143 -0.7152 -0.0031 9 6 4.8351 -1.5988 -0.0069 10 6 2.3272 -1.1329 0.0048 11 16 1.7810 -2.8081 0.0120 12 8 2.8419 -3.5785 -0.5362 13 8 0.4656 -2.8035 -0.5254 14 7 1.6375 -3.2702 1.5957 15 6 0.4506 -3.0935 2.2556 16 1 0.4339 -2.5912 3.2115 17 6 -0.7309 -3.5601 1.6959 18 7 -0.7009 -4.5402 0.8178 19 14 -2.3631 -2.7972 2.1890 20 1 -3.4652 -3.4682 1.4539 21 1 -2.5672 -2.9660 3.6501 22 1 -2.3545 -1.3504 1.8542 23 6 2.7801 -3.8678 2.2908 24 6 2.5614 -4.3471 3.7272 25 6 3.3846 -3.0857 3.4587 26 1 -0.3634 0.0038 1.0277 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8920 -0.5105 29 1 5.6907 0.8874 -0.0162 30 1 5.6473 3.0261 -1.2700 31 1 4.7753 1.7505 -2.1530 32 1 3.8675 2.9951 -1.2614 33 1 4.7955 1.7594 2.1254 34 1 5.6592 3.0313 1.2288 35 1 3.8793 3.0003 1.2371 36 1 5.1245 -1.8143 -1.0354 37 1 5.6537 -1.0896 0.5018 38 1 4.6101 -2.5315 0.5104 39 1 -1.5298 -4.9156 0.4816 40 1 3.4613 -4.4451 1.6656 41 1 1.5674 -4.2173 4.1552 42 1 3.0985 -5.2400 4.0472 43 1 4.4632 -3.1487 3.6019 44 1 2.9322 -2.1263 3.7095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609673731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:57 Heat of formation + Delta-G solvation = 29.965308 kcal Electronic energy + Delta-G solvation = -28201.666111 eV Core-core repulsion = 24477.034731 eV Total energy + Delta-G solvation = -3724.631381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.86742 -37.06823 -35.82354 -35.54190 -34.04712 -33.15913 -32.39880 -30.60910 -30.45604 -27.42223 -27.27405 -26.59495 -24.79529 -21.91320 -21.56059 -20.62081 -20.42651 -18.73142 -18.59006 -16.94054 -16.29019 -15.89442 -15.41656 -15.14141 -14.86150 -14.36478 -14.13175 -13.88420 -13.52058 -13.25289 -13.19017 -12.92196 -12.81683 -12.41959 -12.29881 -12.24118 -12.00506 -11.88601 -11.62498 -11.49942 -11.32624 -11.29301 -11.18629 -10.97227 -10.77907 -10.58279 -10.46190 -10.31363 -10.22567 -10.13456 -9.87615 -9.40892 -9.27402 -8.60474 -8.56041 -8.31936 -7.40441 -6.37817 -4.04845 2.04070 2.23244 2.78365 3.04306 3.27611 3.34238 3.34828 4.21590 4.43426 4.70408 4.79519 4.81180 4.82092 4.90450 5.06308 5.17403 5.31383 5.37102 5.47217 5.55966 5.59423 5.60917 5.72125 5.76049 5.78305 5.85416 5.89218 5.95584 6.01776 6.08113 6.25318 6.31358 6.38895 6.44354 6.52730 6.63778 6.80036 6.83924 7.03742 7.24328 7.42118 7.54060 7.64870 8.14158 8.35269 9.05072 9.47773 10.69012 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.005936 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.394015 B = 4716.041849 C = 5363.309573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.164 3.836 3 N -0.313 5.313 4 N -0.369 5.369 5 C 0.151 3.849 6 C -0.159 4.159 7 C -0.159 4.159 8 C 0.181 3.819 9 C -0.106 4.106 10 C -0.794 4.794 11 S 2.625 3.375 12 O -1.017 7.017 13 O -0.945 6.945 14 N -0.794 5.794 15 C -0.300 4.300 16 H 0.075 0.925 17 C 0.070 3.930 18 N -0.792 5.792 19 Si 0.914 3.086 20 H -0.282 1.282 21 H -0.276 1.276 22 H -0.264 1.264 23 C 0.098 3.902 24 C -0.162 4.162 25 C -0.216 4.216 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.277 0.723 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.634 8.251 1.604 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.005 4.005 3 N -0.134 5.134 4 N -0.150 5.150 5 C 0.049 3.951 6 C -0.217 4.217 7 C -0.217 4.217 8 C 0.050 3.950 9 C -0.164 4.164 10 C -0.884 4.884 11 S 2.722 3.278 12 O -1.007 7.007 13 O -0.933 6.933 14 N -0.617 5.617 15 C -0.443 4.443 16 H 0.093 0.907 17 C -0.147 4.147 18 N -0.426 5.426 19 Si 0.740 3.260 20 H -0.207 1.207 21 H -0.201 1.201 22 H -0.189 1.189 23 C -0.012 4.012 24 C -0.201 4.201 25 C -0.256 4.256 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.694 9.196 0.466 13.371 hybrid contribution -0.465 0.296 0.472 0.726 sum 9.229 9.492 0.938 13.273 Atomic orbital electron populations 1.20689 0.86168 1.04768 1.04127 1.21794 0.96474 0.88752 0.93439 1.77147 0.85890 1.22588 1.27744 1.49049 1.05399 1.03792 1.56724 1.21266 0.84828 0.91913 0.97104 1.22108 1.03177 0.99890 0.96509 1.22108 1.03137 0.99866 0.96572 1.20832 0.95965 0.84282 0.93884 1.20756 0.92286 0.99033 1.04299 1.32657 0.98491 1.28262 1.29027 1.07365 0.72637 0.72311 0.75466 1.93286 1.58595 1.69510 1.79291 1.93361 1.36638 1.85616 1.77704 1.52243 1.13575 1.65138 1.30726 1.18678 0.82299 1.37335 1.06013 0.90696 1.25607 1.00249 0.93549 0.95298 1.69813 1.29840 1.18091 1.24873 0.86232 0.81178 0.80498 0.78096 1.20741 1.20118 1.18912 1.21381 0.91861 0.99148 0.88786 1.23017 1.01789 0.96236 0.99065 1.23337 0.97918 0.96920 1.07458 0.89891 0.91847 0.86771 0.88348 0.90979 0.92164 0.91091 0.92030 0.91027 0.91092 0.89398 0.91426 0.87868 0.91225 0.86828 0.87388 0.89948 0.90071 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 10.14 36.00 0.37 -1.65 16 2 C 0.16 3.53 7.21 -82.41 -0.59 2.94 16 3 N -0.31 -6.25 12.43 33.67 0.42 -5.83 16 4 N -0.37 -6.45 3.28 -50.70 -0.17 -6.61 16 5 C 0.15 1.88 3.64 -67.93 -0.25 1.63 16 6 C -0.16 -1.75 9.45 37.16 0.35 -1.40 16 7 C -0.16 -1.76 9.45 37.15 0.35 -1.40 16 8 C 0.18 3.46 6.92 -82.26 -0.57 2.89 16 9 C -0.11 -1.65 8.99 36.01 0.32 -1.33 16 10 C -0.79 -17.59 6.17 -40.01 -0.25 -17.84 16 11 S 2.63 65.16 5.40 -107.50 -0.58 64.58 16 12 O -1.02 -25.95 14.62 -57.17 -0.84 -26.78 16 13 O -0.94 -25.79 11.62 -57.17 -0.66 -26.45 16 14 N -0.79 -19.01 3.01 -53.43 -0.16 -19.17 16 15 C -0.30 -7.42 7.72 -15.06 -0.12 -7.53 16 16 H 0.08 1.79 7.64 -52.49 -0.40 1.38 16 17 C 0.07 1.79 4.05 -17.43 -0.07 1.72 16 18 N -0.79 -21.66 11.73 55.49 0.65 -21.01 16 19 Si 0.91 19.96 29.62 -169.99 -5.03 14.92 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 C 0.10 2.02 6.24 -67.93 -0.42 1.60 16 24 C -0.16 -2.94 9.83 -26.73 -0.26 -3.20 16 25 C -0.22 -3.74 10.35 -26.73 -0.28 -4.02 16 26 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.11 2.54 5.66 -51.93 -0.29 2.25 16 29 H 0.10 1.00 6.67 -51.93 -0.35 0.66 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.07 0.79 7.09 -51.93 -0.37 0.43 16 38 H 0.10 1.75 6.69 -51.93 -0.35 1.41 16 39 H 0.28 7.20 8.32 -40.82 -0.34 6.86 16 40 H 0.11 2.30 7.46 -51.92 -0.39 1.91 16 41 H 0.11 2.11 6.89 -51.93 -0.36 1.75 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -31.75 367.32 -8.97 -40.72 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.71 Total: 7.69 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -1.42 Total: -27.59 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.74 Total: -52.62 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.50 Total: -53.24 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: 65.16 SS G_CDS: -0.58 Total: 64.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.75 -8.97 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609673731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.682 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds