Wall clock time and date at job start Tue Mar 31 2020 15:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30845 * 125.89514 * 2 1 4 4 N 1.40089 * 108.20020 * 180.25211 * 3 2 1 5 5 C 1.46505 * 126.03096 * 179.73527 * 4 3 2 6 6 C 1.52997 * 109.47245 * 299.97826 * 5 4 3 7 7 C 1.52992 * 109.47163 * 59.98102 * 5 4 3 8 8 C 1.34942 * 107.93052 * 359.72037 * 4 3 2 9 9 C 1.50700 * 126.13066 * 180.02562 * 8 4 3 10 10 C 1.35320 * 107.74195 * 359.97438 * 8 4 3 11 11 S 1.76204 * 126.03597 * 180.02562 * 10 8 4 12 12 O 1.42103 * 106.40537 * 336.46157 * 11 10 8 13 13 O 1.42099 * 106.40041 * 203.53848 * 11 10 8 14 14 N 1.65603 * 107.21643 * 90.00391 * 11 10 8 15 15 C 1.36939 * 119.99907 * 89.99764 * 14 11 10 16 16 H 1.07997 * 119.99505 * 231.38179 * 15 14 11 17 17 C 1.38811 * 120.00181 * 51.38420 * 15 14 11 18 18 N 1.31625 * 119.99529 * 23.61781 * 17 15 14 19 19 Si 1.86793 * 120.00094 * 203.61417 * 17 15 14 20 20 H 1.48504 * 109.47067 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47610 * 300.00256 * 19 17 15 22 22 H 1.48504 * 109.47049 * 60.00469 * 19 17 15 23 23 C 1.46494 * 119.99954 * 269.99829 * 14 11 10 24 24 C 1.52996 * 117.50108 * 183.42648 * 23 14 11 25 25 C 1.53002 * 60.00155 * 252.50641 * 24 23 14 26 26 H 1.09002 * 109.47304 * 270.21194 * 1 2 3 27 27 H 1.08997 * 109.46840 * 30.21860 * 1 2 3 28 28 H 1.09005 * 109.46560 * 150.21503 * 1 2 3 29 29 H 1.09000 * 109.46672 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47052 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.47333 * 299.99738 * 6 5 4 32 32 H 1.08996 * 109.47493 * 60.00438 * 6 5 4 33 33 H 1.09001 * 109.47432 * 59.99793 * 7 5 4 34 34 H 1.08998 * 109.47064 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47355 * 299.99616 * 7 5 4 36 36 H 1.08998 * 109.47278 * 269.97427 * 9 8 4 37 37 H 1.09001 * 109.46835 * 29.97597 * 9 8 4 38 38 H 1.09003 * 109.46760 * 149.97325 * 9 8 4 39 39 H 0.96999 * 119.99829 * 174.95235 * 18 17 15 40 40 H 1.09007 * 115.55095 * 329.13126 * 23 14 11 41 41 H 1.09003 * 117.49923 * 359.97438 * 24 23 14 42 42 H 1.09003 * 117.50057 * 145.01654 * 24 23 14 43 43 H 1.08992 * 117.50000 * 252.50780 * 25 24 23 44 44 H 1.08997 * 117.51251 * 107.47369 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0059 5 6 4.7898 1.5010 -0.0133 6 6 4.7683 2.3815 -1.2643 7 6 4.7802 2.3867 1.2341 8 6 3.6143 -0.7152 -0.0031 9 6 4.8351 -1.5988 -0.0069 10 6 2.3272 -1.1329 0.0048 11 16 1.7810 -2.8081 0.0120 12 8 2.8419 -3.5785 -0.5362 13 8 0.4656 -2.8035 -0.5254 14 7 1.6375 -3.2702 1.5957 15 6 0.4506 -3.0935 2.2556 16 1 0.4339 -2.5912 3.2115 17 6 -0.7309 -3.5601 1.6959 18 7 -0.7009 -4.5402 0.8178 19 14 -2.3631 -2.7972 2.1890 20 1 -3.4652 -3.4682 1.4539 21 1 -2.5672 -2.9660 3.6501 22 1 -2.3545 -1.3504 1.8542 23 6 2.7801 -3.8678 2.2908 24 6 2.5614 -4.3471 3.7272 25 6 3.3846 -3.0857 3.4587 26 1 -0.3634 0.0038 1.0277 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8920 -0.5105 29 1 5.6907 0.8874 -0.0162 30 1 5.6473 3.0261 -1.2700 31 1 4.7753 1.7505 -2.1530 32 1 3.8675 2.9951 -1.2614 33 1 4.7955 1.7594 2.1254 34 1 5.6592 3.0313 1.2288 35 1 3.8793 3.0003 1.2371 36 1 5.1245 -1.8143 -1.0354 37 1 5.6537 -1.0896 0.5018 38 1 4.6101 -2.5315 0.5104 39 1 -1.5298 -4.9156 0.4816 40 1 3.4613 -4.4451 1.6656 41 1 1.5674 -4.2173 4.1552 42 1 3.0985 -5.2400 4.0472 43 1 4.4632 -3.1487 3.6019 44 1 2.9322 -2.1263 3.7095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609673731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:55 Heat of formation + Delta-G solvation = 9.821094 kcal Electronic energy + Delta-G solvation = -28202.539630 eV Core-core repulsion = 24477.034731 eV Total energy + Delta-G solvation = -3725.504900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.33278 -38.67029 -37.62510 -36.81667 -36.02610 -34.96155 -33.79861 -32.31601 -31.98540 -28.75183 -28.26974 -27.99193 -26.66789 -23.15819 -22.95714 -22.19148 -22.01591 -20.54228 -20.02446 -18.65849 -17.77892 -17.53183 -17.04951 -16.78822 -16.43493 -15.97741 -15.47165 -15.30500 -15.14488 -14.77513 -14.43806 -14.24875 -14.13241 -13.97616 -13.51839 -13.44509 -13.36277 -13.24594 -13.08428 -13.01323 -12.98771 -12.78276 -12.45162 -12.37458 -12.29857 -12.24854 -12.10220 -12.04154 -11.98191 -11.86218 -11.50988 -11.13710 -10.88404 -10.43883 -10.04842 -9.87633 -9.18092 -8.28050 -5.99020 0.26844 0.70559 1.38092 1.48683 1.51442 1.57870 1.61072 2.41624 2.99187 3.12583 3.28074 3.35054 3.52607 3.69971 3.82136 3.88376 4.00464 4.04052 4.11143 4.26031 4.35970 4.44544 4.53162 4.59330 4.61146 4.61664 4.70875 4.74219 4.76640 4.85665 4.91089 4.96424 5.01376 5.09058 5.15996 5.18261 5.25533 5.31653 5.58690 5.59677 5.64519 5.95043 6.09579 6.41934 6.59948 7.18112 7.60633 8.78892 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.005936 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.394015 B = 4716.041849 C = 5363.309573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.143 3.857 3 N -0.318 5.318 4 N -0.356 5.356 5 C 0.133 3.867 6 C -0.155 4.155 7 C -0.153 4.153 8 C 0.188 3.812 9 C -0.109 4.109 10 C -0.829 4.829 11 S 2.637 3.363 12 O -1.033 7.033 13 O -0.979 6.979 14 N -0.807 5.807 15 C -0.305 4.305 16 H 0.079 0.921 17 C 0.032 3.968 18 N -0.839 5.839 19 Si 0.957 3.043 20 H -0.286 1.286 21 H -0.257 1.257 22 H -0.259 1.259 23 C 0.058 3.942 24 C -0.156 4.156 25 C -0.185 4.185 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.273 0.727 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.545 10.245 2.792 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.025 4.025 3 N -0.140 5.140 4 N -0.136 5.136 5 C 0.034 3.966 6 C -0.212 4.212 7 C -0.211 4.211 8 C 0.054 3.946 9 C -0.167 4.167 10 C -0.923 4.923 11 S 2.737 3.263 12 O -1.023 7.023 13 O -0.969 6.969 14 N -0.631 5.631 15 C -0.447 4.447 16 H 0.097 0.903 17 C -0.181 4.181 18 N -0.475 5.475 19 Si 0.780 3.220 20 H -0.212 1.212 21 H -0.181 1.181 22 H -0.183 1.183 23 C -0.051 4.051 24 C -0.195 4.195 25 C -0.224 4.224 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.149 0.851 30 H 0.129 0.871 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.598 11.176 1.700 16.926 hybrid contribution -1.141 -0.196 0.070 1.160 sum 11.457 10.980 1.770 15.967 Atomic orbital electron populations 1.20615 0.86256 1.04682 1.04018 1.21916 0.96963 0.89078 0.94498 1.77064 0.87227 1.22201 1.27495 1.49473 1.05737 1.03929 1.54488 1.21938 0.83777 0.92376 0.98536 1.22103 1.04121 0.99712 0.95278 1.22095 1.04025 0.99665 0.95322 1.21257 0.96027 0.85348 0.91955 1.20933 0.92141 0.98211 1.05446 1.32212 1.00492 1.26847 1.32771 1.06172 0.71799 0.72926 0.75416 1.93251 1.58734 1.70581 1.79754 1.93325 1.38342 1.86599 1.78589 1.52167 1.14446 1.66120 1.30358 1.18825 0.82752 1.36942 1.06155 0.90302 1.26341 1.03127 0.93472 0.95178 1.69904 1.30117 1.20161 1.27276 0.85564 0.77782 0.79908 0.78756 1.21189 1.18119 1.18306 1.21622 0.91919 1.01677 0.89847 1.23075 1.01645 0.98098 0.96722 1.23329 0.99744 0.95810 1.03548 0.90006 0.89514 0.89187 0.85060 0.87061 0.93034 0.92996 0.92764 0.87127 0.93080 0.88331 0.86758 0.89375 0.91703 0.87011 0.89162 0.87085 0.86367 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.05 10.14 71.24 0.72 -3.32 16 2 C 0.14 6.23 7.21 43.10 0.31 6.54 16 3 N -0.32 -12.46 12.43 -47.39 -0.59 -13.05 16 4 N -0.36 -11.65 3.28 -314.31 -1.03 -12.68 16 5 C 0.13 2.80 3.64 44.99 0.16 2.97 16 6 C -0.15 -2.86 9.45 71.98 0.68 -2.18 16 7 C -0.15 -2.81 9.45 71.98 0.68 -2.12 16 8 C 0.19 6.86 6.92 41.41 0.29 7.14 16 9 C -0.11 -3.10 8.99 71.24 0.64 -2.46 16 10 C -0.83 -36.87 6.17 21.99 0.14 -36.74 16 11 S 2.64 134.70 5.40 -56.49 -0.31 134.40 16 12 O -1.03 -53.90 14.62 -128.00 -1.87 -55.78 16 13 O -0.98 -56.08 11.62 -128.00 -1.49 -57.57 16 14 N -0.81 -39.41 3.01 -322.95 -0.97 -40.39 16 15 C -0.30 -15.44 7.72 84.03 0.65 -14.79 16 16 H 0.08 3.83 7.64 -2.91 -0.02 3.80 16 17 C 0.03 1.67 4.05 84.86 0.34 2.01 16 18 N -0.84 -47.98 11.73 21.65 0.25 -47.73 16 19 Si 0.96 41.63 29.62 68.60 2.03 43.66 16 20 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 23 C 0.06 2.37 6.24 44.99 0.28 2.65 16 24 C -0.16 -5.48 9.83 30.59 0.30 -5.18 16 25 C -0.18 -5.98 10.35 30.60 0.32 -5.67 16 26 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 27 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.09 4.20 5.66 -2.38 -0.01 4.19 16 29 H 0.13 1.94 6.67 -2.39 -0.02 1.93 16 30 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.11 2.11 7.09 -2.39 -0.02 2.09 16 38 H 0.09 2.84 6.69 -2.39 -0.02 2.82 16 39 H 0.27 14.99 8.32 -92.71 -0.77 14.22 16 40 H 0.11 4.54 7.46 -2.38 -0.02 4.52 16 41 H 0.09 3.50 6.89 -2.39 -0.02 3.48 16 42 H 0.11 3.20 8.14 -2.39 -0.02 3.19 16 43 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 44 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -72.86 367.32 2.54 -70.32 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 1.00 Total: 29.97 kcal Atomic # 6 Polarization: -56.67 SS G_CDS: 5.51 Total: -51.16 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -2.34 Total: -113.85 kcal Atomic # 8 Polarization: -109.99 SS G_CDS: -3.36 Total: -113.35 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 134.70 SS G_CDS: -0.31 Total: 134.40 kcal Total: -72.86 2.54 -70.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609673731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.143 kcal (2) G-P(sol) polarization free energy of solvation -72.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds