Wall clock time and date at job start Tue Mar 31 2020 16:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47340 * 2 1 4 4 N 1.32029 * 122.71000 * 269.97376 * 3 2 1 5 5 C 1.29618 * 116.90508 * 180.02562 * 4 3 2 6 6 N 1.39003 * 124.94699 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00615 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99685 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00083 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99667 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47162 * 89.99849 * 10 9 7 12 12 H 1.08005 * 119.99595 * 0.02562 * 11 10 9 13 13 C 1.37867 * 120.00437 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00462 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99722 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47126 * 90.00047 * 15 13 11 17 17 H 1.48503 * 109.47064 * 209.99785 * 15 13 11 18 18 H 1.48498 * 109.47189 * 330.00221 * 15 13 11 19 19 C 1.46498 * 120.00266 * 359.97438 * 9 7 6 20 20 C 1.52998 * 109.47241 * 90.00346 * 19 9 7 21 21 O 1.42896 * 109.47291 * 64.99915 * 20 19 9 22 22 C 1.42900 * 114.00373 * 180.02562 * 21 20 19 23 23 S 1.70968 * 110.11274 * 359.72364 * 5 4 3 24 24 C 1.33407 * 122.71854 * 89.99616 * 3 2 1 25 25 C 1.50703 * 125.96470 * 359.97438 * 24 3 2 26 26 H 1.09001 * 109.46788 * 60.00655 * 1 2 3 27 27 H 1.08997 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47022 * 300.00414 * 1 2 3 29 29 H 1.08999 * 109.47456 * 239.99299 * 2 1 3 30 30 H 1.09004 * 109.46460 * 119.99734 * 2 1 3 31 31 H 0.97003 * 119.99786 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.46754 * 209.99451 * 10 9 7 33 33 H 1.08996 * 109.47015 * 329.99835 * 10 9 7 34 34 H 0.97006 * 120.00149 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47389 * 210.00275 * 19 9 7 36 36 H 1.09002 * 109.47069 * 329.99943 * 19 9 7 37 37 H 1.08999 * 109.47157 * 185.00578 * 20 19 9 38 38 H 1.09003 * 109.46687 * 305.00253 * 20 19 9 39 39 H 1.09000 * 109.47019 * 59.99787 * 22 21 20 40 40 H 1.08998 * 109.47271 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.46999 * 300.00196 * 22 21 20 42 42 H 1.09002 * 109.47152 * 89.99966 * 25 24 3 43 43 H 1.09001 * 109.46980 * 330.00067 * 25 24 3 44 44 H 1.09004 * 109.47113 * 210.00047 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2707 2.0933 -1.1109 5 6 2.7011 3.3089 -0.9798 6 7 3.0036 4.1644 -2.0328 7 6 3.4460 5.4124 -1.7815 8 8 3.5800 5.7902 -0.6337 9 7 3.7388 6.2419 -2.8026 10 6 4.2192 7.5987 -2.5293 11 6 5.7233 7.5900 -2.4365 12 1 6.2670 6.6662 -2.5684 13 6 6.4053 8.7613 -2.1844 14 7 7.7179 8.7536 -2.1029 15 14 5.4649 10.3595 -1.9585 16 1 5.1289 10.5375 -0.5229 17 1 6.3041 11.4964 -2.4150 18 1 4.2142 10.3151 -2.7578 19 6 3.5768 5.7869 -4.1856 20 6 2.1606 6.1098 -4.6662 21 8 1.9845 7.5271 -4.7115 22 6 0.6879 7.9381 -5.1496 23 16 2.8344 3.7099 0.6768 24 6 2.2727 2.1007 1.1224 25 6 2.0895 1.5844 2.5263 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.8963 3.8631 -2.9486 32 1 3.9088 8.2633 -3.3356 33 1 3.7990 7.9499 -1.5869 34 1 8.1978 9.5779 -1.9259 35 1 4.3011 6.2947 -4.8225 36 1 3.7409 4.7105 -4.2356 37 1 2.0110 5.6930 -5.6622 38 1 1.4356 5.6754 -3.9779 39 1 -0.0675 7.5416 -4.4711 40 1 0.6346 9.0267 -5.1559 41 1 0.5073 7.5592 -6.1556 42 1 3.0141 1.1169 2.8651 43 1 1.2843 0.8498 2.5411 44 1 1.8375 2.4130 3.1882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610559741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:00 Heat of formation + Delta-G solvation = -22.280857 kcal Electronic energy + Delta-G solvation = -26060.332029 eV Core-core repulsion = 22333.435085 eV Total energy + Delta-G solvation = -3726.896945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.44615 -39.51123 -37.83579 -35.54192 -35.04260 -33.17177 -32.43766 -31.35917 -30.01051 -27.98810 -26.45193 -26.10421 -24.06463 -23.53911 -22.87195 -22.01759 -20.41228 -19.03019 -17.80193 -17.20305 -17.01083 -16.78182 -16.19595 -15.80059 -15.49471 -15.04290 -14.90280 -14.48542 -14.17661 -14.01116 -13.93879 -13.62966 -13.06749 -12.95622 -12.64141 -12.50957 -12.42714 -12.25314 -12.18744 -11.98041 -11.86374 -11.61948 -11.18975 -11.08386 -11.02431 -10.75197 -10.47005 -10.38108 -10.13907 -9.67676 -9.57684 -9.47897 -9.46297 -8.81286 -8.57034 -8.12740 -7.67154 -6.07528 -4.06619 1.04248 1.42515 2.15800 2.65849 2.85140 3.32492 3.38698 3.41516 3.54511 3.82523 4.01682 4.41968 4.57994 4.97053 5.07134 5.10935 5.19092 5.23703 5.24930 5.26108 5.29763 5.35590 5.37652 5.38765 5.39548 5.54703 5.68071 5.73435 5.80533 5.83604 5.95096 6.01429 6.08372 6.20137 6.36234 6.55474 6.92974 7.07371 7.18832 7.22874 7.60814 7.92966 8.19222 8.44544 8.75695 8.94973 9.52138 11.05672 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003751 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.367382 B = 7462.436392 C = 8830.449175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C 0.087 3.913 4 N -0.526 5.526 5 C 0.273 3.727 6 N -0.643 5.643 7 C 0.697 3.303 8 O -0.549 6.549 9 N -0.582 5.582 10 C 0.234 3.766 11 C -0.532 4.532 12 H 0.074 0.926 13 C 0.075 3.925 14 N -0.897 5.897 15 Si 0.873 3.127 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.261 1.261 19 C 0.107 3.893 20 C 0.041 3.959 21 O -0.374 6.374 22 C 0.032 3.968 23 S 0.255 5.745 24 C -0.304 4.304 25 C -0.064 4.064 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.412 0.588 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.996 -13.370 -0.369 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.045 4.045 4 N -0.250 5.250 5 C -0.096 4.096 6 N -0.298 5.298 7 C 0.398 3.602 8 O -0.425 6.425 9 N -0.314 5.314 10 C 0.114 3.886 11 C -0.571 4.571 12 H 0.092 0.908 13 C -0.128 4.128 14 N -0.536 5.536 15 Si 0.700 3.300 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.186 1.186 19 C -0.017 4.017 20 C -0.037 4.037 21 O -0.292 6.292 22 C -0.065 4.065 23 S 0.506 5.494 24 C -0.427 4.427 25 C -0.123 4.123 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.251 0.749 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.279 -11.940 0.437 19.396 hybrid contribution -0.839 -0.306 -0.816 1.210 sum -16.118 -12.246 -0.379 20.246 Atomic orbital electron populations 1.21699 0.94738 1.01453 1.02236 1.20048 0.95832 0.89794 1.02867 1.19519 1.01594 0.97526 0.85871 1.66119 1.21632 1.04671 1.32592 1.23005 1.00858 0.91498 0.94212 1.42204 1.67719 1.11977 1.07868 1.15852 0.78924 0.79252 0.86206 1.90833 1.59025 1.73533 1.19088 1.47137 1.66084 1.15439 1.02767 1.19755 0.95280 0.75955 0.97650 1.21339 0.89455 0.96556 1.49726 0.90794 1.24800 0.94732 0.98810 0.94443 1.69896 1.06559 1.27903 1.49197 0.86890 0.80428 0.83431 0.79288 1.19937 1.21131 1.18592 1.21609 0.96007 0.99469 0.84641 1.23133 0.97938 0.82924 0.99693 1.88048 1.31911 1.21294 1.87963 1.22722 0.85088 1.01010 0.97702 1.85233 1.60645 1.07454 0.96107 1.26153 1.14501 1.01541 1.00503 1.20060 1.01988 1.00615 0.89633 0.92492 0.92371 0.92685 0.90572 0.90513 0.74888 0.93299 0.94536 0.92563 0.87656 0.90134 0.92348 0.93593 0.94462 0.89699 0.94361 0.91301 0.91097 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.90 37.16 0.37 -0.92 16 2 C -0.05 -0.47 5.86 -27.88 -0.16 -0.64 16 3 C 0.09 1.22 5.99 -84.20 -0.50 0.72 16 4 N -0.53 -8.43 10.58 -11.28 -0.12 -8.55 16 5 C 0.27 4.66 8.19 -87.35 -0.72 3.95 16 6 N -0.64 -10.74 5.27 -17.48 -0.09 -10.83 16 7 C 0.70 14.15 8.24 -86.92 -0.72 13.43 16 8 O -0.55 -12.94 13.38 5.29 0.07 -12.87 16 9 N -0.58 -11.63 2.42 -180.81 -0.44 -12.07 16 10 C 0.23 5.62 4.05 -5.19 -0.02 5.60 16 11 C -0.53 -15.06 9.94 -34.44 -0.34 -15.41 16 12 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16 13 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 14 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 15 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 19 C 0.11 1.60 5.58 -4.04 -0.02 1.58 16 20 C 0.04 0.53 6.28 37.16 0.23 0.76 16 21 O -0.37 -5.75 9.53 -35.23 -0.34 -6.08 16 22 C 0.03 0.36 11.01 101.05 1.11 1.47 16 23 S 0.25 4.26 20.21 -107.50 -2.17 2.08 16 24 C -0.30 -4.17 6.58 -36.00 -0.24 -4.41 16 25 C -0.06 -0.64 9.80 36.01 0.35 -0.28 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.48 7.98 -51.93 -0.41 0.07 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.66 7.34 -51.93 -0.38 0.28 16 31 H 0.41 5.64 6.55 -40.82 -0.27 5.37 16 32 H 0.05 1.16 6.17 -51.93 -0.32 0.84 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.11 1.67 8.07 -51.93 -0.42 1.25 16 36 H 0.08 0.96 6.36 -51.93 -0.33 0.63 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.58 7.25 -51.93 -0.38 0.20 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -34.61 374.81 -8.77 -43.38 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.68 Total: 1.30 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -0.75 Total: 7.92 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.12 Total: -58.23 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.26 Total: -18.95 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -2.17 Total: 2.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.61 -8.77 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610559741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.095 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds