Wall clock time and date at job start Tue Mar 31 2020 16:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47340 * 2 1 4 4 N 1.32029 * 122.71000 * 269.97376 * 3 2 1 5 5 C 1.29618 * 116.90508 * 180.02562 * 4 3 2 6 6 N 1.39003 * 124.94699 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00615 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99685 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00083 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99667 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47162 * 89.99849 * 10 9 7 12 12 H 1.08005 * 119.99595 * 0.02562 * 11 10 9 13 13 C 1.37867 * 120.00437 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00462 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99722 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47126 * 90.00047 * 15 13 11 17 17 H 1.48503 * 109.47064 * 209.99785 * 15 13 11 18 18 H 1.48498 * 109.47189 * 330.00221 * 15 13 11 19 19 C 1.46498 * 120.00266 * 359.97438 * 9 7 6 20 20 C 1.52998 * 109.47241 * 90.00346 * 19 9 7 21 21 O 1.42896 * 109.47291 * 64.99915 * 20 19 9 22 22 C 1.42900 * 114.00373 * 180.02562 * 21 20 19 23 23 S 1.70968 * 110.11274 * 359.72364 * 5 4 3 24 24 C 1.33407 * 122.71854 * 89.99616 * 3 2 1 25 25 C 1.50703 * 125.96470 * 359.97438 * 24 3 2 26 26 H 1.09001 * 109.46788 * 60.00655 * 1 2 3 27 27 H 1.08997 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47022 * 300.00414 * 1 2 3 29 29 H 1.08999 * 109.47456 * 239.99299 * 2 1 3 30 30 H 1.09004 * 109.46460 * 119.99734 * 2 1 3 31 31 H 0.97003 * 119.99786 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.46754 * 209.99451 * 10 9 7 33 33 H 1.08996 * 109.47015 * 329.99835 * 10 9 7 34 34 H 0.97006 * 120.00149 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47389 * 210.00275 * 19 9 7 36 36 H 1.09002 * 109.47069 * 329.99943 * 19 9 7 37 37 H 1.08999 * 109.47157 * 185.00578 * 20 19 9 38 38 H 1.09003 * 109.46687 * 305.00253 * 20 19 9 39 39 H 1.09000 * 109.47019 * 59.99787 * 22 21 20 40 40 H 1.08998 * 109.47271 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.46999 * 300.00196 * 22 21 20 42 42 H 1.09002 * 109.47152 * 89.99966 * 25 24 3 43 43 H 1.09001 * 109.46980 * 330.00067 * 25 24 3 44 44 H 1.09004 * 109.47113 * 210.00047 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2707 2.0933 -1.1109 5 6 2.7011 3.3089 -0.9798 6 7 3.0036 4.1644 -2.0328 7 6 3.4460 5.4124 -1.7815 8 8 3.5800 5.7902 -0.6337 9 7 3.7388 6.2419 -2.8026 10 6 4.2192 7.5987 -2.5293 11 6 5.7233 7.5900 -2.4365 12 1 6.2670 6.6662 -2.5684 13 6 6.4053 8.7613 -2.1844 14 7 7.7179 8.7536 -2.1029 15 14 5.4649 10.3595 -1.9585 16 1 5.1289 10.5375 -0.5229 17 1 6.3041 11.4964 -2.4150 18 1 4.2142 10.3151 -2.7578 19 6 3.5768 5.7869 -4.1856 20 6 2.1606 6.1098 -4.6662 21 8 1.9845 7.5271 -4.7115 22 6 0.6879 7.9381 -5.1496 23 16 2.8344 3.7099 0.6768 24 6 2.2727 2.1007 1.1224 25 6 2.0895 1.5844 2.5263 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.8963 3.8631 -2.9486 32 1 3.9088 8.2633 -3.3356 33 1 3.7990 7.9499 -1.5869 34 1 8.1978 9.5779 -1.9259 35 1 4.3011 6.2947 -4.8225 36 1 3.7409 4.7105 -4.2356 37 1 2.0110 5.6930 -5.6622 38 1 1.4356 5.6754 -3.9779 39 1 -0.0675 7.5416 -4.4711 40 1 0.6346 9.0267 -5.1559 41 1 0.5073 7.5592 -6.1556 42 1 3.0141 1.1169 2.8651 43 1 1.2843 0.8498 2.5411 44 1 1.8375 2.4130 3.1882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610559741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:59 Heat of formation + Delta-G solvation = -45.635840 kcal Electronic energy + Delta-G solvation = -26061.344777 eV Core-core repulsion = 22333.435085 eV Total energy + Delta-G solvation = -3727.909693 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.88870 -40.74599 -38.93401 -36.98938 -36.47077 -34.81270 -34.00009 -32.26175 -31.45529 -29.65597 -27.52766 -27.14142 -25.27375 -24.82065 -24.17805 -23.41834 -21.84978 -20.32310 -19.19067 -19.06579 -18.44642 -18.06904 -17.28640 -17.12566 -16.80492 -16.52570 -16.14711 -15.80736 -15.59493 -15.24598 -15.06383 -14.82705 -14.48467 -14.09955 -13.91061 -13.82846 -13.58352 -13.42380 -13.23322 -13.17653 -13.05855 -12.79490 -12.73704 -12.48236 -12.09103 -12.07061 -11.94600 -11.86403 -11.71752 -11.64076 -10.96929 -10.80233 -10.73345 -10.61028 -10.09024 -9.69035 -8.96507 -8.31918 -6.36510 -0.18817 0.18635 0.93485 1.25889 1.37059 1.38259 1.48555 1.59476 2.10979 2.33259 2.63692 2.85400 3.03843 3.50847 4.01789 4.08246 4.12100 4.19646 4.23355 4.38787 4.45380 4.50782 4.51556 4.55556 4.56540 4.74679 4.79919 4.82428 4.85565 4.89618 4.93673 4.96679 5.07799 5.11426 5.18123 5.34543 5.37269 5.45708 5.52072 5.66825 6.23386 6.25728 6.58049 6.64238 6.83784 7.15817 7.30033 8.84851 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003751 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.367382 B = 7462.436392 C = 8830.449175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C 0.069 3.931 4 N -0.523 5.523 5 C 0.251 3.749 6 N -0.629 5.629 7 C 0.695 3.305 8 O -0.589 6.589 9 N -0.588 5.588 10 C 0.251 3.749 11 C -0.536 4.536 12 H 0.031 0.969 13 C 0.015 3.985 14 N -0.944 5.944 15 Si 0.942 3.058 16 H -0.275 1.275 17 H -0.276 1.276 18 H -0.239 1.239 19 C 0.099 3.901 20 C 0.047 3.953 21 O -0.412 6.412 22 C 0.027 3.973 23 S 0.196 5.804 24 C -0.281 4.281 25 C -0.066 4.066 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.425 0.575 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.268 0.732 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.570 -14.832 -0.647 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.063 4.063 4 N -0.247 5.247 5 C -0.117 4.117 6 N -0.284 5.284 7 C 0.396 3.604 8 O -0.468 6.468 9 N -0.321 5.321 10 C 0.129 3.871 11 C -0.574 4.574 12 H 0.049 0.951 13 C -0.183 4.183 14 N -0.584 5.584 15 Si 0.765 3.235 16 H -0.200 1.200 17 H -0.201 1.201 18 H -0.162 1.162 19 C -0.023 4.023 20 C -0.030 4.030 21 O -0.331 6.331 22 C -0.069 4.069 23 S 0.446 5.554 24 C -0.403 4.403 25 C -0.125 4.125 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.267 0.733 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.894 -13.472 0.105 22.398 hybrid contribution -0.033 -0.052 -0.695 0.697 sum -17.927 -13.524 -0.590 22.464 Atomic orbital electron populations 1.21677 0.93538 1.02870 1.01597 1.20206 0.96734 0.87297 1.04063 1.20206 1.01677 0.99106 0.85270 1.66170 1.20750 1.04060 1.33685 1.23083 1.02605 0.92036 0.93968 1.41787 1.67235 1.10762 1.08609 1.15922 0.78807 0.80113 0.85607 1.90812 1.60561 1.74746 1.20712 1.47039 1.65949 1.14246 1.04853 1.19285 0.92187 0.78561 0.97021 1.21564 0.91724 0.94967 1.49184 0.95106 1.25744 0.95607 1.02891 0.94038 1.70044 1.08484 1.29189 1.50719 0.85794 0.79834 0.78534 0.79329 1.20025 1.20097 1.16236 1.21947 0.97652 1.01065 0.81659 1.23127 0.95929 0.82317 1.01676 1.87977 1.34029 1.22550 1.88587 1.22884 0.83591 1.01389 0.99017 1.85380 1.61832 1.10794 0.97368 1.26509 1.12403 0.99010 1.02390 1.20267 1.03668 1.01453 0.87158 0.94112 0.89924 0.92363 0.90597 0.88130 0.73289 0.92278 0.96260 0.92297 0.88797 0.87207 0.88508 0.93284 0.93962 0.89425 0.92045 0.89893 0.88407 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.90 71.98 0.71 -1.37 16 2 C -0.04 -0.77 5.86 29.85 0.17 -0.59 16 3 C 0.07 1.80 5.99 41.43 0.25 2.05 16 4 N -0.52 -16.29 10.58 -189.59 -2.01 -18.30 16 5 C 0.25 8.63 8.19 179.21 1.47 10.10 16 6 N -0.63 -21.09 5.27 -327.47 -1.73 -22.82 16 7 C 0.70 28.95 8.24 179.06 1.48 30.43 16 8 O -0.59 -29.00 13.38 -3.97 -0.05 -29.05 16 9 N -0.59 -23.92 2.42 -844.21 -2.04 -25.97 16 10 C 0.25 12.33 4.05 85.63 0.35 12.67 16 11 C -0.54 -31.50 9.94 25.60 0.25 -31.24 16 12 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 13 C 0.02 0.91 5.47 84.65 0.46 1.38 16 14 N -0.94 -59.89 13.96 21.44 0.30 -59.59 16 15 Si 0.94 44.94 27.47 68.60 1.88 46.82 16 16 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 19 C 0.10 2.91 5.58 86.38 0.48 3.39 16 20 C 0.05 1.11 6.28 71.98 0.45 1.56 16 21 O -0.41 -12.00 9.53 -148.98 -1.42 -13.42 16 22 C 0.03 0.56 11.01 113.37 1.25 1.81 16 23 S 0.20 6.68 20.21 -56.49 -1.14 5.54 16 24 C -0.28 -7.28 6.58 24.59 0.16 -7.12 16 25 C -0.07 -1.14 9.80 71.24 0.70 -0.44 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.83 7.98 -2.39 -0.02 0.82 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.33 7.34 -2.38 -0.02 1.31 16 31 H 0.43 11.33 6.55 -92.71 -0.61 10.72 16 32 H 0.06 2.79 6.17 -2.39 -0.01 2.77 16 33 H 0.02 1.02 6.85 -2.39 -0.02 1.00 16 34 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 35 H 0.09 2.97 8.07 -2.39 -0.02 2.95 16 36 H 0.11 2.48 6.36 -2.39 -0.02 2.46 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 1.20 7.25 -2.39 -0.02 1.18 16 44 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -79.00 374.81 2.33 -76.67 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.35 Total: 17.50 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 8.19 Total: 22.61 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -5.48 Total: -126.67 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.47 Total: -42.47 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.14 Total: 5.54 kcal Total: -79.00 2.33 -76.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610559741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.035 kcal (2) G-P(sol) polarization free energy of solvation -79.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds