Wall clock time and date at job start Tue Mar 31 2020 16:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47196 * 2 1 4 4 N 1.30844 * 125.89752 * 270.20936 * 3 2 1 5 5 N 1.40088 * 108.20507 * 180.25828 * 4 3 2 6 6 C 1.46496 * 126.03706 * 179.70200 * 5 4 3 7 7 C 1.34949 * 107.92134 * 359.72137 * 5 4 3 8 8 C 1.50704 * 126.12267 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46846 * 90.02872 * 8 7 5 10 10 C 1.35310 * 107.75176 * 359.97438 * 7 5 4 11 11 S 1.76195 * 126.04499 * 180.02562 * 10 7 5 12 12 O 1.42096 * 106.40036 * 336.45810 * 11 10 7 13 13 O 1.42101 * 106.40653 * 203.54263 * 11 10 7 14 14 N 1.65598 * 107.21927 * 89.99679 * 11 10 7 15 15 C 1.36943 * 119.99795 * 97.74502 * 14 11 10 16 16 H 1.08005 * 119.99441 * 233.33057 * 15 14 11 17 17 C 1.38807 * 120.00369 * 53.32960 * 15 14 11 18 18 N 1.31616 * 120.00432 * 202.14962 * 17 15 14 19 19 Si 1.86803 * 119.99747 * 22.15172 * 17 15 14 20 20 H 1.48505 * 109.46966 * 265.39847 * 19 17 15 21 21 H 1.48496 * 109.47194 * 25.39457 * 19 17 15 22 22 H 1.48500 * 109.47174 * 145.39822 * 19 17 15 23 23 C 1.46497 * 120.00229 * 277.74373 * 14 11 10 24 24 C 1.53004 * 117.50095 * 194.52069 * 23 14 11 25 25 C 1.53001 * 117.49986 * 125.89590 * 23 14 11 26 26 H 1.08998 * 109.47040 * 300.00343 * 1 2 3 27 27 H 1.09006 * 109.47076 * 59.99833 * 1 2 3 28 28 H 1.08993 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46793 * 239.99980 * 2 1 3 30 30 H 1.08997 * 109.47123 * 120.00384 * 2 1 3 31 31 H 1.09010 * 109.46554 * 270.02213 * 6 5 4 32 32 H 1.08998 * 109.47538 * 30.01938 * 6 5 4 33 33 H 1.08997 * 109.46756 * 150.02920 * 6 5 4 34 34 H 1.09006 * 109.47028 * 210.02307 * 8 7 5 35 35 H 1.09000 * 109.47286 * 330.02853 * 8 7 5 36 36 H 1.08996 * 109.46995 * 299.99483 * 9 8 7 37 37 H 1.09000 * 109.47194 * 59.99924 * 9 8 7 38 38 H 1.09000 * 109.46785 * 180.02562 * 9 8 7 39 39 H 0.97000 * 120.00194 * 179.97438 * 18 17 15 40 40 H 1.09005 * 115.55060 * 340.22892 * 23 14 11 41 41 H 1.09001 * 117.49625 * 359.97438 * 24 23 14 42 42 H 1.09001 * 117.49704 * 145.01727 * 24 23 14 43 43 H 1.09002 * 117.49658 * 214.97485 * 25 23 14 44 44 H 1.08990 * 117.49715 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1454 -1.0599 5 7 2.7364 3.4011 -0.6342 6 6 3.1348 4.5130 -1.5009 7 6 2.7404 3.4055 0.7153 8 6 3.1551 4.5538 1.5988 9 6 1.9380 5.4304 1.9007 10 6 2.3052 2.1943 1.1330 11 16 2.1223 1.6795 2.8081 12 8 2.9955 2.4958 3.5764 13 8 2.1904 0.2601 2.8015 14 7 0.5830 2.0717 3.2762 15 6 -0.4034 1.1222 3.2504 16 1 -1.3255 1.3157 2.7224 17 6 -0.2181 -0.0890 3.9027 18 7 -0.9199 -1.1434 3.5448 19 14 1.0271 -0.2224 5.2887 20 1 2.3204 -0.7115 4.7469 21 1 1.2234 1.1129 5.9081 22 1 0.5277 -1.1746 6.3130 23 6 0.2765 3.4345 3.7178 24 6 -1.0475 3.6585 4.4512 25 6 -0.8724 4.1626 3.0172 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.2008 4.4408 -1.7175 32 1 2.5709 4.4677 -2.4325 33 1 2.9296 5.4577 -0.9974 34 1 3.5635 4.1652 2.5318 35 1 3.9138 5.1483 1.0898 36 1 1.5297 5.8189 0.9678 37 1 1.1793 4.8359 2.4098 38 1 2.2381 6.2611 2.5394 39 1 -0.7901 -1.9898 4.0005 40 1 1.1332 4.0309 4.0317 41 1 -1.6907 2.7920 4.6046 42 1 -1.0620 4.4023 5.2479 43 1 -0.7717 5.2380 2.8706 44 1 -1.3998 3.6278 2.2274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611081959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:52 Heat of formation + Delta-G solvation = 38.645599 kcal Electronic energy + Delta-G solvation = -28976.264349 eV Core-core repulsion = 25252.009373 eV Total energy + Delta-G solvation = -3724.254975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.94673 -37.45919 -36.22891 -34.61180 -34.49226 -33.37155 -33.15177 -31.24120 -31.15581 -28.79829 -26.39320 -24.81505 -23.65568 -22.92272 -21.64922 -20.73213 -20.33902 -19.12440 -18.80842 -17.43810 -16.40447 -16.13930 -15.48802 -15.43659 -15.02456 -14.41214 -14.14325 -14.00488 -13.83897 -13.49655 -13.25842 -13.02611 -12.92716 -12.90301 -12.65789 -12.14547 -11.79167 -11.67141 -11.52754 -11.47512 -11.29170 -11.17203 -11.04185 -10.80719 -10.68542 -10.53974 -10.41901 -10.21649 -10.18554 -10.05032 -9.82622 -9.57381 -9.28530 -8.70959 -8.66269 -8.47743 -7.65745 -6.52190 -4.22479 1.69556 2.05975 2.76203 2.91708 3.31453 3.45239 3.56579 4.23394 4.38716 4.58837 4.63398 4.68519 4.90759 4.97797 5.09762 5.10103 5.25179 5.35606 5.39103 5.43936 5.57029 5.65597 5.68948 5.69537 5.80915 5.90381 6.10092 6.16487 6.19939 6.23094 6.32637 6.34637 6.43088 6.44725 6.64712 6.76898 6.93056 6.94115 7.13993 7.17607 7.29933 7.35486 7.74063 8.04039 8.20134 8.99907 9.11586 10.50275 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.007689 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.140651 B = 3640.788819 C = 4376.486841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C 0.173 3.827 4 N -0.314 5.314 5 N -0.376 5.376 6 C 0.098 3.902 7 C 0.190 3.810 8 C -0.097 4.097 9 C -0.169 4.169 10 C -0.787 4.787 11 S 2.581 3.419 12 O -1.007 7.007 13 O -0.951 6.951 14 N -0.809 5.809 15 C -0.278 4.278 16 H 0.094 0.906 17 C 0.107 3.893 18 N -0.815 5.815 19 Si 0.830 3.170 20 H -0.236 1.236 21 H -0.256 1.256 22 H -0.282 1.282 23 C 0.085 3.915 24 C -0.166 4.166 25 C -0.205 4.205 26 H 0.092 0.908 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.281 0.719 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 11.022 -4.287 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C 0.005 3.995 4 N -0.134 5.134 5 N -0.155 5.155 6 C -0.044 4.044 7 C 0.058 3.942 8 C -0.136 4.136 9 C -0.226 4.226 10 C -0.880 4.880 11 S 2.683 3.317 12 O -0.997 6.997 13 O -0.940 6.940 14 N -0.632 5.632 15 C -0.423 4.423 16 H 0.112 0.888 17 C -0.111 4.111 18 N -0.450 5.450 19 Si 0.654 3.346 20 H -0.160 1.160 21 H -0.180 1.180 22 H -0.209 1.209 23 C -0.024 4.024 24 C -0.205 4.205 25 C -0.245 4.245 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.146 0.854 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.985 10.685 -5.343 12.594 hybrid contribution 0.511 0.189 0.415 0.684 sum 4.496 10.874 -4.928 12.757 Atomic orbital electron populations 1.21759 0.92946 1.02613 1.02869 1.20453 0.97716 0.87808 1.04629 1.21929 0.92889 0.96279 0.88433 1.77264 1.23133 0.90453 1.22554 1.48794 1.50786 1.11707 1.04200 1.21814 1.01026 0.86434 0.95097 1.20858 0.93762 0.95321 0.84245 1.20842 0.99175 0.93089 1.00491 1.22184 0.98415 1.00010 1.02034 1.32073 1.26449 1.02432 1.27032 1.08433 0.75536 0.74465 0.73219 1.93273 1.66976 1.70097 1.69360 1.93407 1.85774 1.28699 1.86113 1.52485 1.27516 1.13437 1.69771 1.18542 0.97529 0.94335 1.31914 0.88814 1.25648 0.94905 0.94819 0.95723 1.69774 1.38114 1.00219 1.36844 0.87483 0.84742 0.80385 0.81940 1.15966 1.17962 1.20887 1.21545 0.92611 0.85824 1.02387 1.23175 1.00411 1.03159 0.93789 1.23334 1.05405 0.98932 0.96831 0.88964 0.94601 0.92016 0.91620 0.86372 0.91038 0.89367 0.89669 0.85408 0.90806 0.93181 0.89302 0.91449 0.90852 0.86068 0.86884 0.89652 0.89713 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.89 37.16 0.37 -2.56 16 2 C -0.07 -1.39 6.19 -27.89 -0.17 -1.56 16 3 C 0.17 3.72 6.46 -82.40 -0.53 3.19 16 4 N -0.31 -6.35 12.58 33.67 0.42 -5.93 16 5 N -0.38 -6.52 4.01 -63.89 -0.26 -6.77 16 6 C 0.10 1.11 11.10 59.84 0.66 1.77 16 7 C 0.19 3.52 6.18 -82.26 -0.51 3.01 16 8 C -0.10 -1.47 5.62 -27.88 -0.16 -1.63 16 9 C -0.17 -2.21 9.82 37.16 0.37 -1.85 16 10 C -0.79 -17.02 6.17 -40.01 -0.25 -17.27 16 11 S 2.58 61.36 4.41 -107.50 -0.47 60.88 16 12 O -1.01 -24.12 14.20 -57.18 -0.81 -24.94 16 13 O -0.95 -24.91 9.96 -57.18 -0.57 -25.48 16 14 N -0.81 -18.21 2.46 -53.42 -0.13 -18.35 16 15 C -0.28 -6.72 6.02 -15.06 -0.09 -6.81 16 16 H 0.09 2.33 7.74 -52.48 -0.41 1.92 16 17 C 0.11 2.75 4.57 -17.43 -0.08 2.67 16 18 N -0.82 -21.33 13.97 55.49 0.78 -20.55 16 19 Si 0.83 20.87 25.26 -169.99 -4.29 16.57 16 20 H -0.24 -6.24 6.15 56.52 0.35 -5.89 16 21 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 C 0.09 1.60 4.84 -67.93 -0.33 1.27 16 24 C -0.17 -2.77 9.87 -26.73 -0.26 -3.03 16 25 C -0.21 -3.28 8.89 -26.73 -0.24 -3.51 16 26 H 0.09 2.09 5.92 -51.93 -0.31 1.79 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.12 2.69 5.66 -51.93 -0.29 2.39 16 31 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.75 7.66 -51.93 -0.40 0.35 16 34 H 0.13 2.20 5.55 -51.93 -0.29 1.91 16 35 H 0.07 0.87 7.72 -51.93 -0.40 0.47 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.31 2.52 -51.93 -0.13 1.18 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.12 2.16 6.48 -51.93 -0.34 1.82 16 41 H 0.11 2.07 7.18 -51.93 -0.37 1.70 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.11 7.74 -51.93 -0.40 0.71 16 44 H 0.10 1.67 8.01 -51.93 -0.42 1.26 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -30.25 348.46 -7.63 -37.88 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.32 Total: 7.73 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -1.22 Total: -26.30 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.81 Total: -51.60 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -1.38 Total: -50.42 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.29 Total: 16.57 kcal Atomic # 16 Polarization: 61.36 SS G_CDS: -0.47 Total: 60.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.25 -7.63 -37.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611081959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.528 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds