Wall clock time and date at job start Tue Mar 31 2020 16:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47196 * 2 1 4 4 N 1.30844 * 125.89752 * 270.20936 * 3 2 1 5 5 N 1.40088 * 108.20507 * 180.25828 * 4 3 2 6 6 C 1.46496 * 126.03706 * 179.70200 * 5 4 3 7 7 C 1.34949 * 107.92134 * 359.72137 * 5 4 3 8 8 C 1.50704 * 126.12267 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46846 * 90.02872 * 8 7 5 10 10 C 1.35310 * 107.75176 * 359.97438 * 7 5 4 11 11 S 1.76195 * 126.04499 * 180.02562 * 10 7 5 12 12 O 1.42096 * 106.40036 * 336.45810 * 11 10 7 13 13 O 1.42101 * 106.40653 * 203.54263 * 11 10 7 14 14 N 1.65598 * 107.21927 * 89.99679 * 11 10 7 15 15 C 1.36943 * 119.99795 * 97.74502 * 14 11 10 16 16 H 1.08005 * 119.99441 * 233.33057 * 15 14 11 17 17 C 1.38807 * 120.00369 * 53.32960 * 15 14 11 18 18 N 1.31616 * 120.00432 * 202.14962 * 17 15 14 19 19 Si 1.86803 * 119.99747 * 22.15172 * 17 15 14 20 20 H 1.48505 * 109.46966 * 265.39847 * 19 17 15 21 21 H 1.48496 * 109.47194 * 25.39457 * 19 17 15 22 22 H 1.48500 * 109.47174 * 145.39822 * 19 17 15 23 23 C 1.46497 * 120.00229 * 277.74373 * 14 11 10 24 24 C 1.53004 * 117.50095 * 194.52069 * 23 14 11 25 25 C 1.53001 * 117.49986 * 125.89590 * 23 14 11 26 26 H 1.08998 * 109.47040 * 300.00343 * 1 2 3 27 27 H 1.09006 * 109.47076 * 59.99833 * 1 2 3 28 28 H 1.08993 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46793 * 239.99980 * 2 1 3 30 30 H 1.08997 * 109.47123 * 120.00384 * 2 1 3 31 31 H 1.09010 * 109.46554 * 270.02213 * 6 5 4 32 32 H 1.08998 * 109.47538 * 30.01938 * 6 5 4 33 33 H 1.08997 * 109.46756 * 150.02920 * 6 5 4 34 34 H 1.09006 * 109.47028 * 210.02307 * 8 7 5 35 35 H 1.09000 * 109.47286 * 330.02853 * 8 7 5 36 36 H 1.08996 * 109.46995 * 299.99483 * 9 8 7 37 37 H 1.09000 * 109.47194 * 59.99924 * 9 8 7 38 38 H 1.09000 * 109.46785 * 180.02562 * 9 8 7 39 39 H 0.97000 * 120.00194 * 179.97438 * 18 17 15 40 40 H 1.09005 * 115.55060 * 340.22892 * 23 14 11 41 41 H 1.09001 * 117.49625 * 359.97438 * 24 23 14 42 42 H 1.09001 * 117.49704 * 145.01727 * 24 23 14 43 43 H 1.09002 * 117.49658 * 214.97485 * 25 23 14 44 44 H 1.08990 * 117.49715 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1454 -1.0599 5 7 2.7364 3.4011 -0.6342 6 6 3.1348 4.5130 -1.5009 7 6 2.7404 3.4055 0.7153 8 6 3.1551 4.5538 1.5988 9 6 1.9380 5.4304 1.9007 10 6 2.3052 2.1943 1.1330 11 16 2.1223 1.6795 2.8081 12 8 2.9955 2.4958 3.5764 13 8 2.1904 0.2601 2.8015 14 7 0.5830 2.0717 3.2762 15 6 -0.4034 1.1222 3.2504 16 1 -1.3255 1.3157 2.7224 17 6 -0.2181 -0.0890 3.9027 18 7 -0.9199 -1.1434 3.5448 19 14 1.0271 -0.2224 5.2887 20 1 2.3204 -0.7115 4.7469 21 1 1.2234 1.1129 5.9081 22 1 0.5277 -1.1746 6.3130 23 6 0.2765 3.4345 3.7178 24 6 -1.0475 3.6585 4.4512 25 6 -0.8724 4.1626 3.0172 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.2008 4.4408 -1.7175 32 1 2.5709 4.4677 -2.4325 33 1 2.9296 5.4577 -0.9974 34 1 3.5635 4.1652 2.5318 35 1 3.9138 5.1483 1.0898 36 1 1.5297 5.8189 0.9678 37 1 1.1793 4.8359 2.4098 38 1 2.2381 6.2611 2.5394 39 1 -0.7901 -1.9898 4.0005 40 1 1.1332 4.0309 4.0317 41 1 -1.6907 2.7920 4.6046 42 1 -1.0620 4.4023 5.2479 43 1 -0.7717 5.2380 2.8706 44 1 -1.3998 3.6278 2.2274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611081959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:50 Heat of formation + Delta-G solvation = 18.461715 kcal Electronic energy + Delta-G solvation = -28977.139587 eV Core-core repulsion = 25252.009373 eV Total energy + Delta-G solvation = -3725.130214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.40167 -38.96261 -38.08909 -36.52080 -35.96108 -35.08837 -34.46303 -32.93737 -32.64882 -30.17421 -27.66396 -26.61911 -24.89156 -24.43035 -22.93869 -22.28940 -21.85053 -20.94281 -20.27329 -19.16293 -17.98435 -17.78808 -17.17506 -16.79758 -16.66604 -15.98692 -15.61763 -15.51634 -15.29516 -15.14044 -14.82192 -14.71808 -14.35969 -14.07213 -13.77097 -13.52259 -13.41603 -13.38695 -13.13722 -12.98562 -12.82963 -12.69810 -12.64000 -12.39641 -12.23619 -12.14963 -12.03175 -11.87665 -11.78248 -11.74973 -11.35477 -11.19759 -10.93525 -10.59240 -10.14821 -9.98102 -9.33364 -8.48700 -6.14792 -0.07706 0.61918 1.26300 1.29423 1.40143 1.51033 1.52340 2.33395 2.60209 2.95368 3.12136 3.30040 3.39386 3.41386 3.77258 3.90993 4.16143 4.19300 4.26760 4.27980 4.31063 4.36440 4.40628 4.54485 4.55774 4.60638 4.66970 4.74028 4.74658 4.80297 4.99768 5.03097 5.10967 5.19801 5.28670 5.32223 5.41964 5.52373 5.53225 5.63705 5.64703 5.97207 6.01255 6.24432 6.52066 7.07669 7.27068 8.58096 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.007689 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.140651 B = 3640.788819 C = 4376.486841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.067 4.067 3 C 0.156 3.844 4 N -0.326 5.326 5 N -0.365 5.365 6 C 0.081 3.919 7 C 0.202 3.798 8 C -0.100 4.100 9 C -0.170 4.170 10 C -0.822 4.822 11 S 2.598 3.402 12 O -1.014 7.014 13 O -0.984 6.984 14 N -0.819 5.819 15 C -0.267 4.267 16 H 0.081 0.919 17 C 0.084 3.916 18 N -0.848 5.848 19 Si 0.839 3.161 20 H -0.262 1.262 21 H -0.249 1.249 22 H -0.270 1.270 23 C 0.052 3.948 24 C -0.163 4.163 25 C -0.178 4.178 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.281 0.719 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 15.005 -5.525 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C -0.012 4.012 4 N -0.146 5.146 5 N -0.143 5.143 6 C -0.058 4.058 7 C 0.067 3.933 8 C -0.139 4.139 9 C -0.227 4.227 10 C -0.919 4.919 11 S 2.702 3.298 12 O -1.003 7.003 13 O -0.973 6.973 14 N -0.644 5.644 15 C -0.410 4.410 16 H 0.099 0.901 17 C -0.130 4.130 18 N -0.484 5.484 19 Si 0.664 3.336 20 H -0.187 1.187 21 H -0.173 1.173 22 H -0.196 1.196 23 C -0.055 4.055 24 C -0.202 4.202 25 C -0.217 4.217 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.152 0.848 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.675 14.665 -6.539 16.723 hybrid contribution 0.452 -0.815 0.626 1.123 sum 5.127 13.850 -5.913 15.908 Atomic orbital electron populations 1.21629 0.92921 1.02526 1.02160 1.20369 0.97729 0.88286 1.04272 1.21927 0.93804 0.96540 0.88909 1.77169 1.23386 0.91810 1.22263 1.49179 1.48861 1.11736 1.04523 1.22409 1.02626 0.85615 0.95159 1.21320 0.91712 0.95094 0.85176 1.21025 1.01223 0.92532 0.99138 1.22224 0.96910 1.00150 1.03463 1.31634 1.30123 1.04649 1.25501 1.06826 0.75444 0.73612 0.73942 1.93274 1.66962 1.69981 1.70126 1.93383 1.86328 1.30684 1.86948 1.52425 1.26255 1.14844 1.70841 1.18250 0.97477 0.94254 1.30970 0.90095 1.25886 0.95219 0.95351 0.96537 1.69799 1.39873 1.00519 1.38242 0.87326 0.83361 0.80772 0.82170 1.18734 1.17289 1.19619 1.21896 0.94166 0.84425 1.05050 1.23256 0.98223 1.03235 0.95518 1.23319 1.02297 1.00477 0.95657 0.91582 0.93142 0.91831 0.89648 0.88991 0.88785 0.88174 0.86239 0.87657 0.86681 0.91310 0.91268 0.88418 0.90932 0.84837 0.89214 0.86242 0.85846 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 9.89 71.98 0.71 -4.90 16 2 C -0.07 -2.86 6.19 29.85 0.18 -2.67 16 3 C 0.16 6.68 6.46 43.10 0.28 6.96 16 4 N -0.33 -12.59 12.58 -47.38 -0.60 -13.19 16 5 N -0.36 -11.41 4.01 -356.03 -1.43 -12.83 16 6 C 0.08 1.42 11.10 127.77 1.42 2.84 16 7 C 0.20 6.93 6.18 41.40 0.26 7.19 16 8 C -0.10 -2.63 5.62 29.85 0.17 -2.46 16 9 C -0.17 -3.62 9.82 71.98 0.71 -2.92 16 10 C -0.82 -35.07 6.17 21.99 0.14 -34.94 16 11 S 2.60 125.07 4.41 -56.49 -0.25 124.82 16 12 O -1.01 -48.39 14.20 -128.00 -1.82 -50.21 16 13 O -0.98 -53.75 9.96 -128.00 -1.27 -55.03 16 14 N -0.82 -37.19 2.46 -322.93 -0.79 -37.99 16 15 C -0.27 -13.33 6.02 84.03 0.51 -12.83 16 16 H 0.08 4.21 7.74 -2.91 -0.02 4.19 16 17 C 0.08 4.49 4.57 84.86 0.39 4.88 16 18 N -0.85 -46.49 13.97 21.65 0.30 -46.19 16 19 Si 0.84 43.39 25.26 68.60 1.73 45.12 16 20 H -0.26 -14.56 6.15 99.48 0.61 -13.95 16 21 H -0.25 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 23 C 0.05 1.89 4.84 44.99 0.22 2.10 16 24 C -0.16 -5.16 9.87 30.60 0.30 -4.86 16 25 C -0.18 -5.26 8.89 30.60 0.27 -4.99 16 26 H 0.07 3.12 5.92 -2.39 -0.01 3.10 16 27 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 30 H 0.09 4.41 5.66 -2.39 -0.01 4.39 16 31 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.12 1.33 7.66 -2.39 -0.02 1.31 16 34 H 0.11 3.34 5.55 -2.38 -0.01 3.33 16 35 H 0.11 2.05 7.72 -2.39 -0.02 2.03 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.78 2.52 -2.39 -0.01 1.77 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.13 4.47 6.48 -2.38 -0.02 4.45 16 41 H 0.09 3.29 7.18 -2.39 -0.02 3.27 16 42 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.12 2.68 7.74 -2.39 -0.02 2.66 16 44 H 0.08 2.62 8.01 -2.39 -0.02 2.60 16 Total: -1.00 -69.54 348.46 2.34 -67.19 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.92 Total: 24.90 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 5.54 Total: -46.60 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -2.52 Total: -110.20 kcal Atomic # 8 Polarization: -102.14 SS G_CDS: -3.09 Total: -105.24 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.73 Total: 45.12 kcal Atomic # 16 Polarization: 125.07 SS G_CDS: -0.25 Total: 124.82 kcal Total: -69.54 2.34 -67.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611081959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.655 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds