Wall clock time and date at job start Tue Mar 31 2020 15:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36200 * 120.04755 * 2 1 4 4 C 1.41026 * 118.59778 * 179.69438 * 3 2 1 5 5 O 1.21981 * 120.71026 * 180.28987 * 4 3 2 6 6 N 1.35026 * 118.57519 * 0.53750 * 4 3 2 7 7 C 1.46500 * 120.03696 * 179.74743 * 6 4 3 8 8 C 1.50702 * 109.47161 * 269.72579 * 7 6 4 9 9 O 1.21291 * 119.99599 * 354.65001 * 8 7 6 10 10 N 1.34777 * 120.00423 * 174.64654 * 8 7 6 11 11 C 1.46496 * 120.00436 * 184.42757 * 10 8 7 12 12 C 1.50701 * 109.47238 * 270.00408 * 11 10 8 13 13 H 1.08005 * 119.99886 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99922 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99997 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46813 * 90.00301 * 16 14 12 18 18 H 1.48500 * 109.47211 * 210.00039 * 16 14 12 19 19 H 1.48504 * 109.47409 * 330.00422 * 16 14 12 20 20 C 1.39931 * 119.99330 * 4.42930 * 10 8 7 21 21 C 1.38875 * 120.06397 * 246.65779 * 20 10 8 22 22 C 1.38113 * 119.92544 * 179.97438 * 21 20 10 23 23 C 1.38289 * 120.06907 * 359.97438 * 22 21 20 24 24 C 1.38279 * 120.14080 * 0.27813 * 23 22 21 25 25 C 1.38114 * 120.07190 * 359.49225 * 24 23 22 26 26 C 1.34740 * 119.91733 * 359.47256 * 6 4 3 27 27 N 1.30639 * 121.49679 * 0.25688 * 26 6 4 28 28 H 1.08995 * 109.46989 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46841 * 300.02859 * 1 2 3 30 30 H 1.08997 * 109.46909 * 60.02500 * 1 2 3 31 31 H 1.08004 * 120.70204 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.47278 * 149.73147 * 7 6 4 33 33 H 1.08995 * 109.47118 * 29.72557 * 7 6 4 34 34 H 1.09005 * 109.47007 * 30.00151 * 11 10 8 35 35 H 1.08999 * 109.47114 * 149.99875 * 11 10 8 36 36 H 0.97002 * 120.00044 * 180.02562 * 15 14 12 37 37 H 1.07999 * 120.04211 * 0.02562 * 21 20 10 38 38 H 1.07994 * 119.96670 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.92691 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.96248 * 179.71751 * 24 23 22 41 41 H 1.07999 * 120.03276 * 180.25696 * 25 24 23 42 42 H 1.08004 * 119.24771 * 180.27171 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.1790 0.0000 4 6 3.5988 1.1433 0.0066 5 8 4.2480 2.1759 0.0122 6 7 4.2145 -0.0584 0.0015 7 6 5.6776 -0.1328 0.0025 8 6 6.1802 -0.1584 -1.4179 9 8 5.3930 -0.2165 -2.3388 10 7 7.5045 -0.1167 -1.6651 11 6 7.9902 -0.0436 -3.0453 12 6 8.1895 -1.4376 -3.5821 13 1 7.9761 -2.2925 -2.9575 14 6 8.6442 -1.6216 -4.8707 15 7 8.9045 -0.5807 -5.6310 16 14 8.8919 -3.3495 -5.5359 17 1 7.6367 -3.8178 -6.1768 18 1 9.9868 -3.3415 -6.5390 19 1 9.2489 -4.2629 -4.4207 20 6 8.4155 -0.1432 -0.6032 21 6 9.2042 0.9680 -0.3353 22 6 10.1020 0.9388 0.7138 23 6 10.2156 -0.1950 1.4973 24 6 9.4353 -1.3048 1.2298 25 6 8.5322 -1.2804 0.1851 26 6 3.4815 -1.1890 0.0011 27 7 2.1755 -1.1558 0.0006 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5134 -0.8902 31 1 1.6612 2.1213 -0.0004 32 1 5.9949 -1.0400 0.5165 33 1 6.0852 0.7376 0.5166 34 1 7.2594 0.4815 -3.6603 35 1 8.9382 0.4938 -3.0689 36 1 9.2241 -0.7102 -6.5377 37 1 9.1151 1.8542 -0.9461 38 1 10.7160 1.8024 0.9225 39 1 10.9187 -0.2154 2.3168 40 1 9.5296 -2.1905 1.8408 41 1 7.9202 -2.1462 -0.0207 42 1 3.9852 -2.1444 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611190515.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:15 Heat of formation + Delta-G solvation = 11.222202 kcal Electronic energy + Delta-G solvation = -27588.085573 eV Core-core repulsion = 23727.197479 eV Total energy + Delta-G solvation = -3860.888094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86836 -39.96779 -38.27746 -37.61700 -35.68774 -34.92547 -32.80308 -31.76617 -30.84498 -29.86872 -29.46903 -28.01365 -26.46074 -24.70476 -23.22276 -22.67706 -22.29971 -21.92569 -19.39236 -18.41968 -17.73103 -17.36310 -16.65794 -16.51381 -16.19037 -15.55635 -15.38375 -15.13753 -14.55180 -14.39626 -14.34868 -14.11109 -13.94537 -13.69457 -13.26273 -13.18563 -12.98726 -12.65937 -12.51117 -12.45580 -12.38337 -12.03618 -11.58942 -11.31440 -11.12412 -10.92708 -10.72713 -10.58037 -10.26040 -10.15897 -10.03630 -9.85319 -9.50253 -8.80546 -8.75883 -8.51662 -8.42481 -7.83070 -6.13271 -4.18610 0.60459 1.42786 1.52920 1.89172 2.34045 2.95845 3.26164 3.32063 3.33300 3.45291 3.72658 3.90214 3.92890 4.36832 4.41439 4.55260 4.67240 4.76575 5.06413 5.07802 5.12035 5.21371 5.22351 5.25472 5.32453 5.36793 5.56483 5.57525 5.63439 5.70574 5.85976 5.92419 6.14642 6.29466 6.48524 6.59667 6.62599 6.66199 6.82434 7.08096 7.21764 7.31222 7.74793 7.80271 7.88258 8.07723 8.10961 8.60349 8.84125 9.46022 10.95282 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.004467 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.587916 B = 6267.152290 C = 8027.903352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.177 3.823 3 C -0.295 4.295 4 C 0.523 3.477 5 O -0.537 6.537 6 N -0.503 5.503 7 C 0.067 3.933 8 C 0.503 3.497 9 O -0.514 6.514 10 N -0.552 5.552 11 C 0.249 3.751 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.900 3.100 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.155 3.845 21 C -0.120 4.120 22 C -0.107 4.107 23 C -0.132 4.132 24 C -0.108 4.108 25 C -0.130 4.130 26 C 0.393 3.607 27 N -0.544 5.544 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.047 0.953 35 H 0.038 0.962 36 H 0.265 0.735 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.445 -0.875 17.515 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.058 3.942 3 C -0.320 4.320 4 C 0.324 3.676 5 O -0.415 6.415 6 N -0.219 5.219 7 C -0.059 4.059 8 C 0.288 3.712 9 O -0.388 6.388 10 N -0.280 5.280 11 C 0.132 3.868 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.727 3.273 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C 0.063 3.937 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.151 4.151 24 C -0.127 4.127 25 C -0.150 4.150 26 C 0.109 3.891 27 N -0.267 5.267 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.170 0.830 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.970 -0.740 16.760 18.167 hybrid contribution 0.895 -0.274 -0.695 1.166 sum -6.075 -1.014 16.065 17.206 Atomic orbital electron populations 1.20777 0.88132 1.04349 1.03204 1.21191 0.97418 0.87872 0.87750 1.22615 0.92478 1.00814 1.16043 1.17270 0.89512 0.82510 0.78359 1.90943 1.67622 1.31194 1.51753 1.46404 1.08915 1.08767 1.57785 1.22032 0.78452 1.07222 0.98215 1.20255 0.82959 0.77981 0.90014 1.90756 1.54345 1.48158 1.45587 1.45909 1.03336 1.70462 1.08313 1.19495 0.95432 0.98246 0.73630 1.21302 1.44964 0.91914 0.98437 0.92309 1.24913 0.95136 0.97372 0.96500 1.69924 1.44948 1.29473 1.08772 0.86469 0.77909 0.84109 0.78785 1.20473 1.21041 1.19827 1.17793 0.93328 0.93353 0.89221 1.21350 0.96934 0.97912 0.97819 1.21009 0.98021 0.98376 0.95118 1.21100 1.00024 0.93738 1.00189 1.20973 0.95976 0.98326 0.97406 1.21334 1.00300 0.96801 0.96565 1.24941 0.88125 0.91137 0.84889 1.68276 1.05333 1.28654 1.24449 0.90037 0.89933 0.89812 0.82987 0.85942 0.85472 0.93513 0.94368 0.92551 0.85591 0.85914 0.86231 0.85932 0.85808 0.78085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.16 36.01 0.37 -0.54 16 2 C 0.18 2.21 6.77 -82.59 -0.56 1.65 16 3 C -0.29 -4.20 9.75 -39.26 -0.38 -4.58 16 4 C 0.52 9.02 7.45 -15.09 -0.11 8.91 16 5 O -0.54 -11.04 16.78 4.94 0.08 -10.95 16 6 N -0.50 -7.53 2.07 -122.41 -0.25 -7.78 16 7 C 0.07 0.98 4.53 -5.19 -0.02 0.96 16 8 C 0.50 10.12 7.60 -10.98 -0.08 10.04 16 9 O -0.51 -12.60 16.04 5.55 0.09 -12.51 16 10 N -0.55 -11.46 2.51 -114.74 -0.29 -11.75 16 11 C 0.25 6.43 5.07 -5.20 -0.03 6.40 16 12 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 13 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.15 2.64 4.43 -83.69 -0.37 2.27 16 21 C -0.12 -1.87 9.64 -39.39 -0.38 -2.25 16 22 C -0.11 -1.33 10.04 -39.61 -0.40 -1.73 16 23 C -0.13 -1.48 10.04 -39.55 -0.40 -1.88 16 24 C -0.11 -1.25 10.04 -39.61 -0.40 -1.65 16 25 C -0.13 -1.84 8.44 -39.39 -0.33 -2.17 16 26 C 0.39 4.91 11.44 -90.53 -1.04 3.88 16 27 N -0.54 -7.07 10.31 -10.70 -0.11 -7.18 16 28 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.15 1.89 8.06 -52.48 -0.42 1.47 16 32 H 0.12 1.27 6.85 -51.93 -0.36 0.91 16 33 H 0.13 1.87 7.33 -51.93 -0.38 1.49 16 34 H 0.05 1.37 7.49 -51.93 -0.39 0.98 16 35 H 0.04 1.01 7.82 -51.93 -0.41 0.60 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.12 1.64 7.90 -52.49 -0.41 1.22 16 42 H 0.20 1.71 8.03 -52.48 -0.42 1.29 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -36.67 368.32 -9.06 -45.73 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.29 Total: 1.86 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -4.55 Total: 6.07 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.08 Total: -52.24 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.67 -9.06 -45.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611190515.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.950 kcal (2) G-P(sol) polarization free energy of solvation -36.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds