Wall clock time and date at job start Tue Mar 31 2020 15:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36200 * 120.04755 * 2 1 4 4 C 1.41026 * 118.59778 * 179.69438 * 3 2 1 5 5 O 1.21981 * 120.71026 * 180.28987 * 4 3 2 6 6 N 1.35026 * 118.57519 * 0.53750 * 4 3 2 7 7 C 1.46500 * 120.03696 * 179.74743 * 6 4 3 8 8 C 1.50702 * 109.47161 * 269.72579 * 7 6 4 9 9 O 1.21291 * 119.99599 * 354.65001 * 8 7 6 10 10 N 1.34777 * 120.00423 * 174.64654 * 8 7 6 11 11 C 1.46496 * 120.00436 * 184.42757 * 10 8 7 12 12 C 1.50701 * 109.47238 * 270.00408 * 11 10 8 13 13 H 1.08005 * 119.99886 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99922 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99997 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46813 * 90.00301 * 16 14 12 18 18 H 1.48500 * 109.47211 * 210.00039 * 16 14 12 19 19 H 1.48504 * 109.47409 * 330.00422 * 16 14 12 20 20 C 1.39931 * 119.99330 * 4.42930 * 10 8 7 21 21 C 1.38875 * 120.06397 * 246.65779 * 20 10 8 22 22 C 1.38113 * 119.92544 * 179.97438 * 21 20 10 23 23 C 1.38289 * 120.06907 * 359.97438 * 22 21 20 24 24 C 1.38279 * 120.14080 * 0.27813 * 23 22 21 25 25 C 1.38114 * 120.07190 * 359.49225 * 24 23 22 26 26 C 1.34740 * 119.91733 * 359.47256 * 6 4 3 27 27 N 1.30639 * 121.49679 * 0.25688 * 26 6 4 28 28 H 1.08995 * 109.46989 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46841 * 300.02859 * 1 2 3 30 30 H 1.08997 * 109.46909 * 60.02500 * 1 2 3 31 31 H 1.08004 * 120.70204 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.47278 * 149.73147 * 7 6 4 33 33 H 1.08995 * 109.47118 * 29.72557 * 7 6 4 34 34 H 1.09005 * 109.47007 * 30.00151 * 11 10 8 35 35 H 1.08999 * 109.47114 * 149.99875 * 11 10 8 36 36 H 0.97002 * 120.00044 * 180.02562 * 15 14 12 37 37 H 1.07999 * 120.04211 * 0.02562 * 21 20 10 38 38 H 1.07994 * 119.96670 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.92691 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.96248 * 179.71751 * 24 23 22 41 41 H 1.07999 * 120.03276 * 180.25696 * 25 24 23 42 42 H 1.08004 * 119.24771 * 180.27171 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.1790 0.0000 4 6 3.5988 1.1433 0.0066 5 8 4.2480 2.1759 0.0122 6 7 4.2145 -0.0584 0.0015 7 6 5.6776 -0.1328 0.0025 8 6 6.1802 -0.1584 -1.4179 9 8 5.3930 -0.2165 -2.3388 10 7 7.5045 -0.1167 -1.6651 11 6 7.9902 -0.0436 -3.0453 12 6 8.1895 -1.4376 -3.5821 13 1 7.9761 -2.2925 -2.9575 14 6 8.6442 -1.6216 -4.8707 15 7 8.9045 -0.5807 -5.6310 16 14 8.8919 -3.3495 -5.5359 17 1 7.6367 -3.8178 -6.1768 18 1 9.9868 -3.3415 -6.5390 19 1 9.2489 -4.2629 -4.4207 20 6 8.4155 -0.1432 -0.6032 21 6 9.2042 0.9680 -0.3353 22 6 10.1020 0.9388 0.7138 23 6 10.2156 -0.1950 1.4973 24 6 9.4353 -1.3048 1.2298 25 6 8.5322 -1.2804 0.1851 26 6 3.4815 -1.1890 0.0011 27 7 2.1755 -1.1558 0.0006 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5134 -0.8902 31 1 1.6612 2.1213 -0.0004 32 1 5.9949 -1.0400 0.5165 33 1 6.0852 0.7376 0.5166 34 1 7.2594 0.4815 -3.6603 35 1 8.9382 0.4938 -3.0689 36 1 9.2241 -0.7102 -6.5377 37 1 9.1151 1.8542 -0.9461 38 1 10.7160 1.8024 0.9225 39 1 10.9187 -0.2154 2.3168 40 1 9.5296 -2.1905 1.8408 41 1 7.9202 -2.1462 -0.0207 42 1 3.9852 -2.1444 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611190515.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:14 Heat of formation + Delta-G solvation = -11.338328 kcal Electronic energy + Delta-G solvation = -27589.063871 eV Core-core repulsion = 23727.197479 eV Total energy + Delta-G solvation = -3861.866392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.05009 -41.35710 -39.56009 -38.87365 -36.95240 -36.43376 -34.84223 -32.80435 -31.91679 -31.23714 -30.69656 -29.38890 -27.96560 -25.80207 -25.03023 -23.91403 -23.38098 -23.13145 -20.79996 -19.55410 -19.06546 -18.73176 -18.63078 -17.63720 -17.27318 -17.10327 -16.78659 -16.62334 -16.06989 -15.68196 -15.49104 -15.37600 -15.10029 -14.70226 -14.56511 -14.49163 -14.28820 -14.01212 -13.69313 -13.52719 -13.45302 -13.43122 -13.12290 -13.03599 -12.69414 -12.47000 -12.17246 -12.13235 -11.78687 -11.74626 -11.40232 -11.16592 -10.96617 -10.70337 -10.21503 -9.83543 -9.62002 -9.28743 -8.27532 -6.42993 -0.44137 0.32338 0.49693 0.72290 1.17308 1.34753 1.38364 1.43498 1.49179 2.02223 2.35989 2.53147 2.84577 3.01701 3.03460 3.31721 3.40227 3.56451 3.72960 3.98839 4.07492 4.12391 4.21271 4.33087 4.36888 4.58204 4.60317 4.64156 4.71035 4.76434 4.81157 4.93866 5.02516 5.08582 5.15547 5.34367 5.37075 5.46291 5.53421 5.62718 5.63492 5.68969 5.94363 6.04893 6.48955 6.63524 6.64816 6.70864 7.05446 7.28145 8.80650 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.004467 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.587916 B = 6267.152290 C = 8027.903352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.190 3.810 3 C -0.322 4.322 4 C 0.505 3.495 5 O -0.589 6.589 6 N -0.506 5.506 7 C 0.086 3.914 8 C 0.495 3.505 9 O -0.572 6.572 10 N -0.553 5.553 11 C 0.267 3.733 12 C -0.537 4.537 13 H 0.063 0.937 14 C 0.006 3.994 15 N -0.931 5.931 16 Si 0.972 3.028 17 H -0.279 1.279 18 H -0.278 1.278 19 H -0.256 1.256 20 C 0.115 3.885 21 C -0.144 4.144 22 C -0.106 4.106 23 C -0.118 4.118 24 C -0.097 4.097 25 C -0.133 4.133 26 C 0.392 3.608 27 N -0.549 5.549 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.174 0.826 33 H 0.125 0.875 34 H -0.004 1.004 35 H 0.020 0.980 36 H 0.267 0.733 37 H 0.103 0.897 38 H 0.146 0.854 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.134 0.866 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -4.085 20.546 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.069 3.931 3 C -0.346 4.346 4 C 0.308 3.692 5 O -0.472 6.472 6 N -0.221 5.221 7 C -0.040 4.040 8 C 0.283 3.717 9 O -0.451 6.451 10 N -0.280 5.280 11 C 0.147 3.853 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.795 3.205 17 H -0.204 1.204 18 H -0.203 1.203 19 H -0.179 1.179 20 C 0.025 3.975 21 C -0.164 4.164 22 C -0.124 4.124 23 C -0.136 4.136 24 C -0.115 4.115 25 C -0.152 4.152 26 C 0.109 3.891 27 N -0.271 5.271 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.180 0.820 32 H 0.191 0.809 33 H 0.143 0.857 34 H 0.014 0.986 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.164 0.836 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.151 0.849 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.594 -3.983 19.856 21.299 hybrid contribution 0.807 0.740 -1.567 1.912 sum -5.787 -3.243 18.289 19.455 Atomic orbital electron populations 1.20931 0.84980 1.05453 1.04838 1.21799 0.99407 0.86972 0.84931 1.22693 0.91259 1.02266 1.18347 1.17827 0.90687 0.82584 0.78134 1.90898 1.68725 1.32923 1.54684 1.46460 1.09123 1.08997 1.57486 1.21978 0.78304 1.09519 0.94172 1.21196 0.82216 0.76366 0.91908 1.90711 1.55619 1.50875 1.47888 1.45691 1.04600 1.70227 1.07490 1.18856 0.92949 0.97020 0.76444 1.21583 1.44673 0.92415 0.98905 0.91898 1.25916 0.94670 1.01861 0.96794 1.70068 1.45829 1.32026 1.09185 0.85349 0.77803 0.78812 0.78492 1.20450 1.20281 1.17924 1.18080 0.94379 0.95487 0.89596 1.21374 0.98484 0.97217 0.99341 1.21311 0.97056 1.00112 0.93921 1.21601 0.99496 0.92475 1.00012 1.21422 0.94084 0.99723 0.96240 1.21477 1.01209 0.95735 0.96803 1.25880 0.88284 0.91662 0.83244 1.68403 1.05566 1.28719 1.24444 0.89175 0.87487 0.88715 0.82030 0.80904 0.85662 0.98618 0.96232 0.92373 0.87904 0.83584 0.82276 0.81966 0.84861 0.74008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.16 71.24 0.72 -0.80 16 2 C 0.19 4.51 6.77 41.83 0.28 4.79 16 3 C -0.32 -9.30 9.75 22.48 0.22 -9.08 16 4 C 0.50 18.12 7.45 84.89 0.63 18.75 16 5 O -0.59 -25.89 16.78 -5.25 -0.09 -25.98 16 6 N -0.51 -15.15 2.07 -659.14 -1.37 -16.52 16 7 C 0.09 2.51 4.53 85.63 0.39 2.90 16 8 C 0.50 20.91 7.60 87.66 0.67 21.58 16 9 O -0.57 -29.86 16.04 -3.06 -0.05 -29.91 16 10 N -0.55 -24.28 2.51 -635.30 -1.60 -25.87 16 11 C 0.27 14.85 5.07 85.63 0.43 15.28 16 12 C -0.54 -30.75 9.39 25.60 0.24 -30.51 16 13 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 14 C 0.01 0.37 5.46 84.65 0.46 0.84 16 15 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 16 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 20 C 0.11 3.96 4.43 38.15 0.17 4.13 16 21 C -0.14 -4.63 9.64 22.39 0.22 -4.41 16 22 C -0.11 -2.44 10.04 22.25 0.22 -2.21 16 23 C -0.12 -2.12 10.04 22.29 0.22 -1.90 16 24 C -0.10 -1.80 10.04 22.25 0.22 -1.57 16 25 C -0.13 -3.45 8.44 22.39 0.19 -3.26 16 26 C 0.39 9.17 11.44 180.32 2.06 11.24 16 27 N -0.55 -13.33 10.31 -187.76 -1.94 -15.26 16 28 H 0.09 1.19 8.12 -2.39 -0.02 1.17 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.17 3.15 6.85 -2.39 -0.02 3.13 16 33 H 0.13 3.78 7.33 -2.39 -0.02 3.77 16 34 H 0.00 -0.28 7.49 -2.38 -0.02 -0.29 16 35 H 0.02 1.14 7.82 -2.39 -0.02 1.12 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.10 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 39 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.13 3.14 7.90 -2.91 -0.02 3.11 16 42 H 0.24 3.34 8.03 -2.91 -0.02 3.32 16 Total: -1.00 -88.10 368.32 5.67 -82.43 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.04 Total: 15.75 kcal Atomic # 6 Polarization: 18.40 SS G_CDS: 7.36 Total: 25.75 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.61 Total: -114.45 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.14 Total: -55.89 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -88.10 5.67 -82.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611190515.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.092 kcal (2) G-P(sol) polarization free energy of solvation -88.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds