Wall clock time and date at job start Tue Mar 31 2020 14:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38674 * 120.78659 * 2 1 4 4 C 1.38184 * 119.16538 * 180.02562 * 3 2 1 5 5 N 1.31890 * 120.76375 * 359.97438 * 4 3 2 6 6 C 1.31857 * 121.72242 * 359.77258 * 5 4 3 7 7 C 1.38220 * 120.76286 * 0.49273 * 6 5 4 8 8 C 1.50707 * 120.41719 * 179.77203 * 7 6 5 9 9 H 1.08999 * 109.47525 * 219.72069 * 8 7 6 10 10 C 1.53007 * 109.47005 * 99.71867 * 8 7 6 11 11 N 1.46507 * 109.47142 * 339.72374 * 8 7 6 12 12 S 1.65596 * 119.99863 * 215.00127 * 11 8 7 13 13 O 1.42103 * 106.39869 * 311.45588 * 12 11 8 14 14 O 1.42099 * 106.40196 * 178.53586 * 12 11 8 15 15 N 1.65594 * 107.21909 * 64.99704 * 12 11 8 16 16 C 1.46505 * 119.99845 * 269.99893 * 15 12 11 17 17 C 1.46500 * 120.00077 * 90.00126 * 15 12 11 18 18 H 1.09000 * 109.47175 * 359.97438 * 17 15 12 19 19 C 1.53006 * 109.46998 * 119.99765 * 17 15 12 20 20 C 1.50697 * 109.46896 * 239.99694 * 17 15 12 21 21 H 1.07994 * 120.00496 * 0.02562 * 20 17 15 22 22 C 1.37887 * 119.99690 * 179.97438 * 20 17 15 23 23 N 1.31507 * 120.00093 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 119.99676 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.47116 * 60.00382 * 24 22 20 26 26 H 1.48503 * 109.46756 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47119 * 300.00049 * 24 22 20 28 28 H 1.09005 * 109.47126 * 269.97082 * 1 2 3 29 29 H 1.08997 * 109.47562 * 29.97806 * 1 2 3 30 30 H 1.09000 * 109.46698 * 149.97891 * 1 2 3 31 31 H 1.08005 * 120.42111 * 0.02562 * 3 2 1 32 32 H 1.08006 * 119.61938 * 180.02562 * 4 3 2 33 33 H 1.08001 * 119.61346 * 180.23951 * 6 5 4 34 34 H 1.09000 * 109.46778 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.47144 * 300.00435 * 10 8 7 36 36 H 1.08998 * 109.46574 * 59.99946 * 10 8 7 37 37 H 0.96996 * 119.99988 * 34.99487 * 11 8 7 38 38 H 1.09004 * 109.47130 * 270.00127 * 16 15 12 39 39 H 1.08997 * 109.47212 * 29.99879 * 16 15 12 40 40 H 1.09003 * 109.46772 * 150.00492 * 16 15 12 41 41 H 1.09001 * 109.47002 * 179.97438 * 19 17 15 42 42 H 1.08993 * 109.46955 * 300.00226 * 19 17 15 43 43 H 1.09000 * 109.47050 * 60.00054 * 19 17 15 44 44 H 0.96999 * 120.00118 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.1913 0.0000 4 6 3.5980 1.1522 -0.0005 5 7 4.2403 0.0003 -0.0005 6 6 3.5983 -1.1514 0.0044 7 6 2.2167 -1.1907 -0.0004 8 6 1.4909 -2.5115 0.0002 9 1 0.6255 -2.4509 -0.6597 10 6 1.0269 -2.8379 1.4212 11 7 2.3930 -3.5646 -0.4728 12 16 1.7999 -4.8178 -1.3784 13 8 0.6524 -5.3002 -0.6929 14 8 2.9128 -5.6389 -1.7047 15 7 1.2570 -4.1772 -2.8057 16 6 -0.1305 -3.7219 -2.9235 17 6 2.1642 -4.0658 -3.9506 18 1 3.1458 -4.4516 -3.6753 19 6 1.6076 -4.8760 -5.1231 20 6 2.2887 -2.6191 -4.3539 21 1 1.7467 -1.8587 -3.8114 22 6 3.0955 -2.2662 -5.4149 23 7 3.7567 -3.1920 -6.0746 24 14 3.2503 -0.4729 -5.9144 25 1 3.7904 0.3132 -4.7760 26 1 4.1708 -0.3598 -7.0742 27 1 1.9135 0.0537 -6.2895 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6965 2.1378 0.0004 32 1 4.1582 2.0757 -0.0001 33 1 4.1587 -2.0747 0.0082 34 1 0.5016 -3.7930 1.4215 35 1 1.8923 -2.8985 2.0811 36 1 0.3558 -2.0544 1.7731 37 1 3.3376 -3.5278 -0.2556 38 1 -0.7556 -4.5464 -3.2665 39 1 -0.4839 -3.3782 -1.9513 40 1 -0.1844 -2.9025 -3.6403 41 1 2.2823 -4.7928 -5.9751 42 1 1.5175 -5.9223 -4.8313 43 1 0.6261 -4.4898 -5.3982 44 1 4.3240 -2.9437 -6.8212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619751072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:16 Heat of formation + Delta-G solvation = -41.550954 kcal Electronic energy + Delta-G solvation = -27785.833897 eV Core-core repulsion = 24058.101338 eV Total energy + Delta-G solvation = -3727.732559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44453 -36.90755 -36.40115 -36.11053 -35.29031 -33.85732 -32.62391 -30.84599 -29.26122 -29.11804 -27.88218 -25.55791 -25.19239 -24.24541 -22.35957 -21.19237 -20.77854 -19.00922 -17.46303 -16.99181 -16.81480 -16.39965 -16.04867 -15.79932 -15.16608 -14.77455 -14.48480 -14.40086 -13.61351 -13.54781 -13.43343 -13.24745 -12.90555 -12.79110 -12.68267 -12.61660 -12.33840 -12.01472 -11.93022 -11.69902 -11.56053 -11.52454 -11.39613 -11.24232 -11.04681 -10.90659 -10.87628 -10.46902 -10.24381 -10.11721 -9.62073 -9.38602 -9.32293 -9.23254 -8.86488 -8.48925 -8.00693 -6.10424 -4.18605 1.14522 1.21447 1.30654 3.24503 3.30323 3.30968 3.40914 3.84615 4.06083 4.34704 4.39175 4.64724 4.69186 4.84462 4.86350 4.94685 5.14703 5.20559 5.23979 5.33849 5.41166 5.48350 5.49818 5.61207 5.76081 5.78296 5.83035 6.00769 6.09669 6.14907 6.18966 6.27864 6.40844 6.61256 6.75387 6.85060 6.85322 7.08309 7.15158 7.47695 7.60496 7.76599 8.03077 8.06605 8.24091 8.83438 9.47710 10.94652 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.007196 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.329570 B = 3889.926796 C = 5733.927270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.035 4.035 3 C -0.173 4.173 4 C 0.095 3.905 5 N -0.484 5.484 6 C 0.119 3.881 7 C -0.133 4.133 8 C 0.203 3.797 9 H 0.095 0.905 10 C -0.166 4.166 11 N -1.125 6.125 12 S 2.781 3.219 13 O -0.995 6.995 14 O -0.979 6.979 15 N -0.989 5.989 16 C 0.105 3.895 17 C 0.269 3.731 18 H 0.059 0.941 19 C -0.144 4.144 20 C -0.524 4.524 21 H 0.060 0.940 22 C 0.066 3.934 23 N -0.886 5.886 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.411 0.589 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.012 0.988 43 H 0.032 0.968 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 6.539 12.690 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.044 4.044 3 C -0.193 4.193 4 C -0.061 4.061 5 N -0.192 5.192 6 C -0.038 4.038 7 C -0.137 4.137 8 C 0.095 3.905 9 H 0.113 0.887 10 C -0.225 4.225 11 N -0.884 5.884 12 S 2.790 3.210 13 O -0.979 6.979 14 O -0.963 6.963 15 N -0.832 5.832 16 C -0.042 4.042 17 C 0.166 3.834 18 H 0.076 0.924 19 C -0.204 4.204 20 C -0.563 4.563 21 H 0.079 0.921 22 C -0.136 4.136 23 N -0.524 5.524 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.246 0.754 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.031 0.969 43 H 0.051 0.949 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.837 5.568 12.745 15.083 hybrid contribution -0.270 1.596 -0.549 1.709 sum -6.106 7.164 12.196 15.407 Atomic orbital electron populations 1.20920 0.90328 1.03811 1.02762 1.20064 0.96672 0.92253 0.95372 1.21958 0.95627 0.98365 1.03336 1.22713 0.91798 0.96268 0.95342 1.67690 1.41091 0.98396 1.12040 1.22456 0.91041 0.96154 0.94199 1.20782 0.95504 0.95036 1.02341 1.19454 0.91242 0.83432 0.96415 0.88695 1.22326 1.01878 1.02995 0.95333 1.56321 1.18982 1.42338 1.70717 1.01882 0.73087 0.73360 0.72688 1.93545 1.51538 1.78755 1.74012 1.93603 1.53548 1.65304 1.83845 1.57711 1.18566 1.78915 1.28016 1.21248 0.81728 1.00281 1.00933 1.18723 0.87570 0.96073 0.81012 0.92362 1.22050 1.00757 0.95585 1.01992 1.21279 1.27983 0.91993 1.15046 0.92149 1.24889 0.95295 0.97338 0.96120 1.69858 1.29022 1.32417 1.21107 0.86639 0.77926 0.85216 0.78112 1.20299 1.21199 1.20313 0.90371 0.90837 0.90583 0.84939 0.83032 0.83039 0.90441 0.91971 0.91572 0.75376 0.93649 0.93477 0.90118 0.88911 0.96880 0.94890 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.04 36.00 0.33 -0.80 16 2 C -0.04 -0.43 5.92 -104.32 -0.62 -1.05 16 3 C -0.17 -2.01 9.82 -39.44 -0.39 -2.40 16 4 C 0.10 1.25 11.18 -17.55 -0.20 1.05 16 5 N -0.48 -7.57 10.36 -13.25 -0.14 -7.71 16 6 C 0.12 1.79 10.47 -17.55 -0.18 1.61 16 7 C -0.13 -1.84 5.10 -104.48 -0.53 -2.37 16 8 C 0.20 2.73 2.49 -69.07 -0.17 2.55 16 9 H 0.10 1.26 4.49 -51.93 -0.23 1.03 16 10 C -0.17 -1.87 9.46 37.16 0.35 -1.52 16 11 N -1.12 -17.35 5.36 -5.87 -0.03 -17.38 16 12 S 2.78 52.69 6.00 -107.50 -0.65 52.05 16 13 O -1.00 -19.19 16.47 -57.17 -0.94 -20.13 16 14 O -0.98 -21.93 16.70 -57.17 -0.95 -22.89 16 15 N -0.99 -19.85 3.12 -115.84 -0.36 -20.21 16 16 C 0.10 1.77 9.08 59.85 0.54 2.31 16 17 C 0.27 6.48 2.62 -69.08 -0.18 6.30 16 18 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 19 C -0.14 -3.40 8.97 37.16 0.33 -3.07 16 20 C -0.52 -13.29 7.99 -34.44 -0.28 -13.56 16 21 H 0.06 1.50 7.33 -52.49 -0.38 1.11 16 22 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 23 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 24 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 29 H 0.07 0.60 8.10 -51.93 -0.42 0.17 16 30 H 0.08 0.72 6.27 -51.93 -0.33 0.39 16 31 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 33 H 0.15 2.10 5.95 -52.49 -0.31 1.79 16 34 H 0.08 0.94 7.64 -51.93 -0.40 0.55 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.61 7.24 -51.93 -0.38 0.23 16 37 H 0.41 5.78 6.52 -34.47 -0.22 5.55 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.66 6.16 -51.93 -0.32 0.34 16 40 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 41 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -32.41 361.75 -9.19 -41.60 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.09 Total: 6.58 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.09 Total: -9.29 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: 0.10 Total: -69.07 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -1.90 Total: -43.02 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 52.69 SS G_CDS: -0.65 Total: 52.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.41 -9.19 -41.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.048 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds