Wall clock time and date at job start Tue Mar 31 2020 14:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38674 * 120.78659 * 2 1 4 4 C 1.38184 * 119.16538 * 180.02562 * 3 2 1 5 5 N 1.31890 * 120.76375 * 359.97438 * 4 3 2 6 6 C 1.31857 * 121.72242 * 359.77258 * 5 4 3 7 7 C 1.38220 * 120.76286 * 0.49273 * 6 5 4 8 8 C 1.50707 * 120.41719 * 179.77203 * 7 6 5 9 9 H 1.08999 * 109.47525 * 219.72069 * 8 7 6 10 10 C 1.53007 * 109.47005 * 99.71867 * 8 7 6 11 11 N 1.46507 * 109.47142 * 339.72374 * 8 7 6 12 12 S 1.65596 * 119.99863 * 215.00127 * 11 8 7 13 13 O 1.42103 * 106.39869 * 311.45588 * 12 11 8 14 14 O 1.42099 * 106.40196 * 178.53586 * 12 11 8 15 15 N 1.65594 * 107.21909 * 64.99704 * 12 11 8 16 16 C 1.46505 * 119.99845 * 269.99893 * 15 12 11 17 17 C 1.46500 * 120.00077 * 90.00126 * 15 12 11 18 18 H 1.09000 * 109.47175 * 359.97438 * 17 15 12 19 19 C 1.53006 * 109.46998 * 119.99765 * 17 15 12 20 20 C 1.50697 * 109.46896 * 239.99694 * 17 15 12 21 21 H 1.07994 * 120.00496 * 0.02562 * 20 17 15 22 22 C 1.37887 * 119.99690 * 179.97438 * 20 17 15 23 23 N 1.31507 * 120.00093 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 119.99676 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.47116 * 60.00382 * 24 22 20 26 26 H 1.48503 * 109.46756 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47119 * 300.00049 * 24 22 20 28 28 H 1.09005 * 109.47126 * 269.97082 * 1 2 3 29 29 H 1.08997 * 109.47562 * 29.97806 * 1 2 3 30 30 H 1.09000 * 109.46698 * 149.97891 * 1 2 3 31 31 H 1.08005 * 120.42111 * 0.02562 * 3 2 1 32 32 H 1.08006 * 119.61938 * 180.02562 * 4 3 2 33 33 H 1.08001 * 119.61346 * 180.23951 * 6 5 4 34 34 H 1.09000 * 109.46778 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.47144 * 300.00435 * 10 8 7 36 36 H 1.08998 * 109.46574 * 59.99946 * 10 8 7 37 37 H 0.96996 * 119.99988 * 34.99487 * 11 8 7 38 38 H 1.09004 * 109.47130 * 270.00127 * 16 15 12 39 39 H 1.08997 * 109.47212 * 29.99879 * 16 15 12 40 40 H 1.09003 * 109.46772 * 150.00492 * 16 15 12 41 41 H 1.09001 * 109.47002 * 179.97438 * 19 17 15 42 42 H 1.08993 * 109.46955 * 300.00226 * 19 17 15 43 43 H 1.09000 * 109.47050 * 60.00054 * 19 17 15 44 44 H 0.96999 * 120.00118 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.1913 0.0000 4 6 3.5980 1.1522 -0.0005 5 7 4.2403 0.0003 -0.0005 6 6 3.5983 -1.1514 0.0044 7 6 2.2167 -1.1907 -0.0004 8 6 1.4909 -2.5115 0.0002 9 1 0.6255 -2.4509 -0.6597 10 6 1.0269 -2.8379 1.4212 11 7 2.3930 -3.5646 -0.4728 12 16 1.7999 -4.8178 -1.3784 13 8 0.6524 -5.3002 -0.6929 14 8 2.9128 -5.6389 -1.7047 15 7 1.2570 -4.1772 -2.8057 16 6 -0.1305 -3.7219 -2.9235 17 6 2.1642 -4.0658 -3.9506 18 1 3.1458 -4.4516 -3.6753 19 6 1.6076 -4.8760 -5.1231 20 6 2.2887 -2.6191 -4.3539 21 1 1.7467 -1.8587 -3.8114 22 6 3.0955 -2.2662 -5.4149 23 7 3.7567 -3.1920 -6.0746 24 14 3.2503 -0.4729 -5.9144 25 1 3.7904 0.3132 -4.7760 26 1 4.1708 -0.3598 -7.0742 27 1 1.9135 0.0537 -6.2895 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6965 2.1378 0.0004 32 1 4.1582 2.0757 -0.0001 33 1 4.1587 -2.0747 0.0082 34 1 0.5016 -3.7930 1.4215 35 1 1.8923 -2.8985 2.0811 36 1 0.3558 -2.0544 1.7731 37 1 3.3376 -3.5278 -0.2556 38 1 -0.7556 -4.5464 -3.2665 39 1 -0.4839 -3.3782 -1.9513 40 1 -0.1844 -2.9025 -3.6403 41 1 2.2823 -4.7928 -5.9751 42 1 1.5175 -5.9223 -4.8313 43 1 0.6261 -4.4898 -5.3982 44 1 4.3240 -2.9437 -6.8212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619751072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:15 Heat of formation + Delta-G solvation = -64.463896 kcal Electronic energy + Delta-G solvation = -27786.827476 eV Core-core repulsion = 24058.101338 eV Total energy + Delta-G solvation = -3728.726138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42796 -38.40729 -37.94898 -37.49070 -36.90173 -34.80364 -34.52197 -31.91665 -30.94541 -30.25313 -28.70587 -27.25427 -27.00517 -25.22560 -23.32933 -22.64651 -22.15927 -20.43551 -18.91175 -18.47985 -18.29079 -17.99596 -17.15469 -17.07619 -16.73213 -16.11460 -15.74975 -15.43087 -15.17755 -14.88697 -14.60955 -14.53261 -14.31617 -13.77724 -13.74197 -13.53730 -13.51577 -13.47998 -13.32448 -13.20570 -13.15408 -12.99090 -12.83223 -12.74699 -12.73111 -12.51378 -12.24934 -12.14615 -12.00131 -11.85650 -11.23171 -10.74607 -10.50563 -10.34891 -10.28865 -9.88983 -9.66185 -8.10634 -6.24078 -0.31882 0.18438 0.34592 1.40608 1.42862 1.48627 1.95884 2.42405 2.58904 2.84884 3.18270 3.35804 3.45313 3.69725 3.83785 3.87007 3.95006 4.03371 4.25005 4.28759 4.43258 4.59590 4.68381 4.69983 4.79825 4.82294 4.84040 4.90545 4.93017 4.97763 5.00993 5.15060 5.21061 5.23781 5.27156 5.33246 5.44714 5.60448 5.65656 5.82547 5.84069 5.99702 6.12532 6.28244 6.84380 7.06156 7.44972 8.93803 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.007196 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.329570 B = 3889.926796 C = 5733.927270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.039 4.039 3 C -0.169 4.169 4 C 0.080 3.920 5 N -0.518 5.518 6 C 0.092 3.908 7 C -0.143 4.143 8 C 0.198 3.802 9 H 0.100 0.900 10 C -0.162 4.162 11 N -1.119 6.119 12 S 2.797 3.203 13 O -0.996 6.996 14 O -1.019 7.019 15 N -0.996 5.996 16 C 0.096 3.904 17 C 0.275 3.725 18 H 0.022 0.978 19 C -0.138 4.138 20 C -0.521 4.521 21 H 0.067 0.933 22 C 0.018 3.982 23 N -0.917 5.917 24 Si 0.951 3.049 25 H -0.281 1.281 26 H -0.289 1.289 27 H -0.264 1.264 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.167 0.833 32 H 0.175 0.825 33 H 0.148 0.852 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.416 0.584 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.019 0.981 43 H 0.045 0.955 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 8.741 13.782 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.048 4.048 3 C -0.188 4.188 4 C -0.076 4.076 5 N -0.227 5.227 6 C -0.065 4.065 7 C -0.146 4.146 8 C 0.091 3.909 9 H 0.117 0.883 10 C -0.221 4.221 11 N -0.881 5.881 12 S 2.806 3.194 13 O -0.979 6.979 14 O -1.003 7.003 15 N -0.838 5.838 16 C -0.049 4.049 17 C 0.171 3.829 18 H 0.040 0.960 19 C -0.198 4.198 20 C -0.560 4.560 21 H 0.085 0.915 22 C -0.182 4.182 23 N -0.556 5.556 24 Si 0.778 3.222 25 H -0.207 1.207 26 H -0.215 1.215 27 H -0.189 1.189 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.185 0.815 32 H 0.192 0.808 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.253 0.747 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.119 7.768 13.847 17.833 hybrid contribution 0.408 0.953 -0.804 1.312 sum -7.711 8.721 13.043 17.483 Atomic orbital electron populations 1.21040 0.87916 1.04493 1.04465 1.20499 0.98445 0.91708 0.94119 1.22345 0.95117 0.99693 1.01669 1.23230 0.93091 0.96297 0.95017 1.67648 1.42329 0.99311 1.13438 1.22535 0.91990 0.96201 0.95734 1.20826 0.95042 0.95784 1.02991 1.19711 0.90753 0.82698 0.97741 0.88269 1.22301 1.02421 1.03431 0.93907 1.56054 1.19751 1.42330 1.69917 1.01247 0.72329 0.73353 0.72467 1.93537 1.51517 1.79126 1.73749 1.93547 1.55058 1.67214 1.84506 1.57593 1.19448 1.79348 1.27368 1.21490 0.80061 1.00592 1.02799 1.18352 0.86935 0.95409 0.82243 0.96016 1.21929 1.00703 0.96100 1.01020 1.21518 1.27307 0.92691 1.14521 0.91509 1.25610 0.95346 1.00706 0.96494 1.69996 1.29893 1.34082 1.21648 0.85719 0.78233 0.80990 0.77294 1.20735 1.21503 1.18894 0.88022 0.89312 0.90764 0.81539 0.80792 0.83520 0.91273 0.91651 0.88921 0.74728 0.92727 0.90399 0.90428 0.91330 0.96211 0.93555 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.04 71.23 0.64 -1.11 16 2 C -0.04 -0.84 5.92 -19.67 -0.12 -0.96 16 3 C -0.17 -3.41 9.82 22.36 0.22 -3.20 16 4 C 0.08 1.95 11.18 84.67 0.95 2.90 16 5 N -0.52 -16.09 10.36 -195.84 -2.03 -18.12 16 6 C 0.09 2.78 10.47 84.68 0.89 3.66 16 7 C -0.14 -3.73 5.10 -19.77 -0.10 -3.83 16 8 C 0.20 4.99 2.49 44.25 0.11 5.10 16 9 H 0.10 2.38 4.49 -2.39 -0.01 2.37 16 10 C -0.16 -3.26 9.46 71.98 0.68 -2.58 16 11 N -1.12 -34.14 5.36 -172.49 -0.92 -35.07 16 12 S 2.80 105.41 6.00 -56.49 -0.34 105.07 16 13 O -1.00 -37.11 16.47 -128.00 -2.11 -39.22 16 14 O -1.02 -46.87 16.70 -128.00 -2.14 -49.01 16 15 N -1.00 -39.35 3.12 -520.42 -1.62 -40.97 16 16 C 0.10 3.05 9.08 127.77 1.16 4.21 16 17 C 0.28 13.38 2.62 44.25 0.12 13.49 16 18 H 0.02 1.23 6.91 -2.39 -0.02 1.21 16 19 C -0.14 -6.56 8.97 71.98 0.65 -5.91 16 20 C -0.52 -26.31 7.99 25.60 0.20 -26.11 16 21 H 0.07 3.22 7.33 -2.91 -0.02 3.20 16 22 C 0.02 0.96 5.30 84.66 0.45 1.41 16 23 N -0.92 -51.44 11.32 21.45 0.24 -51.20 16 24 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 27 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 28 H 0.10 1.00 7.87 -2.38 -0.02 0.98 16 29 H 0.09 1.02 8.10 -2.39 -0.02 1.01 16 30 H 0.07 1.11 6.27 -2.39 -0.01 1.09 16 31 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.15 4.26 5.95 -2.91 -0.02 4.24 16 34 H 0.07 1.53 7.64 -2.39 -0.02 1.51 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.37 7.24 -2.39 -0.02 1.35 16 37 H 0.42 11.99 6.52 -96.75 -0.63 11.36 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.97 6.16 -2.39 -0.01 1.95 16 40 H 0.08 2.52 7.02 -2.39 -0.02 2.50 16 41 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.05 2.01 7.67 -2.39 -0.02 2.00 16 44 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -70.21 361.75 -0.65 -70.86 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.40 Total: 26.30 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 5.85 Total: -12.92 kcal Atomic # 7 Polarization: -141.02 SS G_CDS: -4.33 Total: -145.35 kcal Atomic # 8 Polarization: -83.98 SS G_CDS: -4.25 Total: -88.23 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 105.41 SS G_CDS: -0.34 Total: 105.07 kcal Total: -70.21 -0.65 -70.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.398 kcal (2) G-P(sol) polarization free energy of solvation -70.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds