Wall clock time and date at job start Tue Mar 31 2020 14:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38675 * 120.78564 * 2 1 4 4 C 1.38189 * 119.15560 * 180.23047 * 3 2 1 5 5 N 1.31875 * 120.77059 * 359.78887 * 4 3 2 6 6 C 1.31859 * 121.72605 * 359.97438 * 5 4 3 7 7 C 1.38231 * 120.76484 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.41922 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46792 * 144.99992 * 8 7 6 10 10 C 1.53000 * 109.47297 * 264.99775 * 8 7 6 11 11 N 1.46498 * 109.47207 * 24.99793 * 8 7 6 12 12 S 1.65609 * 119.99588 * 144.99658 * 11 8 7 13 13 O 1.42100 * 106.40561 * 311.46138 * 12 11 8 14 14 O 1.42101 * 106.39800 * 178.53765 * 12 11 8 15 15 N 1.65602 * 107.21523 * 65.00640 * 12 11 8 16 16 C 1.46509 * 119.99400 * 269.99514 * 15 12 11 17 17 C 1.46497 * 120.00679 * 89.99672 * 15 12 11 18 18 H 1.09002 * 109.46725 * 359.97438 * 17 15 12 19 19 C 1.52997 * 109.47188 * 239.99966 * 17 15 12 20 20 C 1.50697 * 109.47081 * 119.99530 * 17 15 12 21 21 H 1.07999 * 120.00055 * 0.02562 * 20 17 15 22 22 C 1.37878 * 119.99687 * 180.02562 * 20 17 15 23 23 N 1.31511 * 120.00458 * 359.97438 * 22 20 17 24 24 Si 1.86805 * 119.99926 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.46980 * 89.99582 * 24 22 20 26 26 H 1.48493 * 109.47135 * 209.99651 * 24 22 20 27 27 H 1.48498 * 109.47274 * 330.00048 * 24 22 20 28 28 H 1.08996 * 109.47363 * 270.24258 * 1 2 3 29 29 H 1.08998 * 109.47379 * 30.25109 * 1 2 3 30 30 H 1.09006 * 109.46495 * 150.24863 * 1 2 3 31 31 H 1.07996 * 120.41986 * 0.02562 * 3 2 1 32 32 H 1.08005 * 119.60771 * 179.76918 * 4 3 2 33 33 H 1.07997 * 119.62172 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.46682 * 60.00007 * 10 8 7 35 35 H 1.09000 * 109.47619 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.46705 * 300.00135 * 10 8 7 37 37 H 0.96997 * 120.00405 * 325.00245 * 11 8 7 38 38 H 1.09003 * 109.46975 * 269.99970 * 16 15 12 39 39 H 1.08995 * 109.47277 * 30.00022 * 16 15 12 40 40 H 1.09003 * 109.46743 * 150.00508 * 16 15 12 41 41 H 1.09002 * 109.47153 * 299.99573 * 19 17 15 42 42 H 1.09001 * 109.46832 * 179.97438 * 19 17 15 43 43 H 1.09004 * 109.47261 * 59.99745 * 19 17 15 44 44 H 0.96999 * 120.00480 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1520 -0.0049 5 7 4.2403 0.0002 -0.0053 6 6 3.5984 -1.1516 -0.0006 7 6 2.2166 -1.1909 0.0055 8 6 1.4910 -2.5116 0.0113 9 1 0.5808 -2.4234 0.6046 10 6 1.1289 -2.9010 -1.4233 11 7 2.3554 -3.5412 0.5934 12 16 1.6973 -4.7543 1.5088 13 8 0.8308 -4.1265 2.4438 14 8 2.7751 -5.5972 1.8923 15 7 0.7325 -5.6549 0.5085 16 6 -0.6812 -5.3066 0.3460 17 6 1.2926 -6.7997 -0.2139 18 1 2.3499 -6.9018 0.0309 19 6 1.1373 -6.5782 -1.7197 20 6 0.5602 -8.0541 0.1876 21 1 -0.2425 -8.0035 0.9084 22 6 0.9149 -9.2663 -0.3653 23 7 1.8920 -9.3279 -1.2434 24 14 0.0066 -10.8211 0.1318 25 1 -1.1520 -11.0285 -0.7738 26 1 0.9253 -11.9837 0.0343 27 1 -0.4757 -10.6871 1.5298 28 1 -0.3634 0.0044 1.0276 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3632 -0.8923 -0.5100 31 1 1.6966 2.1378 0.0004 32 1 4.1582 2.0755 -0.0087 33 1 4.1585 -2.0749 -0.0015 34 1 2.0391 -2.9892 -2.0165 35 1 0.6036 -3.8561 -1.4191 36 1 0.4857 -2.1349 -1.8564 37 1 3.3132 -3.5124 0.4427 38 1 -1.2738 -5.8352 1.0927 39 1 -0.8080 -4.2318 0.4759 40 1 -1.0138 -5.5938 -0.6516 41 1 0.0801 -6.4759 -1.9648 42 1 1.5544 -7.4298 -2.2571 43 1 1.6670 -5.6709 -2.0101 44 1 2.1418 -10.1807 -1.6321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619751073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:23 Heat of formation + Delta-G solvation = -41.682857 kcal Electronic energy + Delta-G solvation = -27207.721612 eV Core-core repulsion = 23479.983334 eV Total energy + Delta-G solvation = -3727.738278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66646 -36.95382 -36.54186 -36.10029 -35.26381 -34.04375 -32.60649 -31.05053 -29.35417 -29.10891 -28.06678 -25.64383 -25.16836 -24.37586 -22.54215 -21.30256 -20.80020 -18.97832 -17.55935 -17.21226 -16.82127 -16.39251 -16.29877 -15.72103 -15.23102 -14.85913 -14.67087 -14.44003 -13.80106 -13.60769 -13.49511 -13.25698 -13.06142 -12.92225 -12.86225 -12.73906 -12.39137 -12.06023 -11.84744 -11.78178 -11.59084 -11.49999 -11.35228 -11.25180 -11.08519 -10.97972 -10.80471 -10.48738 -10.29953 -10.05721 -9.72772 -9.59931 -9.48720 -9.26644 -9.07502 -8.46946 -8.00717 -6.08289 -4.14808 0.91023 1.04171 1.17779 3.27559 3.34989 3.37521 3.41575 3.60410 4.05558 4.19216 4.39539 4.45810 4.50008 4.64121 4.78016 4.92062 5.03488 5.13882 5.22424 5.23134 5.24289 5.32068 5.40827 5.52786 5.59646 5.64832 5.77320 5.86187 6.02156 6.07165 6.14087 6.21546 6.37737 6.52338 6.58748 6.74978 6.76134 6.98663 7.06374 7.45034 7.61673 7.77576 7.81262 8.03000 8.26262 8.87473 9.51166 10.97267 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024195 B = 0.003514 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.984576 B = 7965.540536 C = 8005.763131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.034 4.034 3 C -0.173 4.173 4 C 0.094 3.906 5 N -0.485 5.485 6 C 0.111 3.889 7 C -0.133 4.133 8 C 0.196 3.804 9 H 0.100 0.900 10 C -0.174 4.174 11 N -1.129 6.129 12 S 2.778 3.222 13 O -0.995 6.995 14 O -0.971 6.971 15 N -0.988 5.988 16 C 0.107 3.893 17 C 0.269 3.731 18 H 0.059 0.941 19 C -0.149 4.149 20 C -0.520 4.520 21 H 0.062 0.938 22 C 0.064 3.936 23 N -0.890 5.890 24 Si 0.898 3.102 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.411 0.589 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.092 0.908 43 H 0.014 0.986 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 19.513 -1.998 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.043 4.043 3 C -0.192 4.192 4 C -0.063 4.063 5 N -0.194 5.194 6 C -0.046 4.046 7 C -0.137 4.137 8 C 0.088 3.912 9 H 0.118 0.882 10 C -0.233 4.233 11 N -0.888 5.888 12 S 2.787 3.213 13 O -0.978 6.978 14 O -0.955 6.955 15 N -0.831 5.831 16 C -0.039 4.039 17 C 0.166 3.834 18 H 0.077 0.923 19 C -0.208 4.208 20 C -0.560 4.560 21 H 0.080 0.920 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.726 3.274 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.245 0.755 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.033 0.967 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.553 19.223 -1.128 19.318 hybrid contribution -0.962 -0.781 -0.306 1.277 sum -2.516 18.442 -1.434 18.668 Atomic orbital electron populations 1.20972 0.90111 1.03738 1.03485 1.20157 0.96882 0.92199 0.95045 1.22005 0.95615 0.98446 1.03177 1.22750 0.91807 0.96278 0.95427 1.67710 1.41093 0.98385 1.12202 1.22535 0.91115 0.96253 0.94745 1.20864 0.95481 0.95200 1.02123 1.19520 0.92471 0.83669 0.95569 0.88208 1.22476 1.02821 1.03070 0.94903 1.56462 1.17817 1.42693 1.71837 1.02001 0.73316 0.72341 0.73624 1.93539 1.67390 1.77248 1.59668 1.93623 1.55138 1.65439 1.81308 1.57692 1.18416 1.42277 1.64726 1.21194 0.82243 0.97619 1.02863 1.18730 0.95040 0.81454 0.88154 0.92324 1.22156 0.99197 1.00154 0.99340 1.21332 1.18540 0.91258 1.24823 0.91954 1.24900 0.95087 0.98956 0.94916 1.69851 1.28414 1.25818 1.28775 0.86503 0.79396 0.82528 0.79015 1.20698 1.21160 1.19858 0.89972 0.90773 0.90364 0.84759 0.82853 0.82847 0.91541 0.89876 0.91607 0.75464 0.93137 0.93498 0.90814 0.94804 0.88939 0.96727 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.31 36.01 0.34 -0.61 16 2 C -0.03 -0.34 5.92 -104.31 -0.62 -0.96 16 3 C -0.17 -1.52 9.82 -39.44 -0.39 -1.91 16 4 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 5 N -0.49 -6.05 10.36 -13.25 -0.14 -6.18 16 6 C 0.11 1.35 10.46 -17.54 -0.18 1.17 16 7 C -0.13 -1.54 5.07 -104.48 -0.53 -2.07 16 8 C 0.20 2.38 2.47 -69.09 -0.17 2.21 16 9 H 0.10 1.20 6.03 -51.93 -0.31 0.89 16 10 C -0.17 -1.93 9.32 37.16 0.35 -1.58 16 11 N -1.13 -16.17 5.40 -5.88 -0.03 -16.20 16 12 S 2.78 52.64 6.08 -107.50 -0.65 51.99 16 13 O -1.00 -20.04 16.55 -57.17 -0.95 -20.98 16 14 O -0.97 -22.26 16.70 -57.17 -0.95 -23.21 16 15 N -0.99 -19.29 2.79 -115.85 -0.32 -19.61 16 16 C 0.11 1.76 8.39 59.85 0.50 2.27 16 17 C 0.27 6.30 2.62 -69.09 -0.18 6.11 16 18 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 19 C -0.15 -3.18 8.66 37.16 0.32 -2.85 16 20 C -0.52 -13.65 8.37 -34.44 -0.29 -13.94 16 21 H 0.06 1.64 7.65 -52.49 -0.40 1.23 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 23 N -0.89 -24.35 11.32 55.43 0.63 -23.72 16 24 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.08 0.56 5.61 -51.93 -0.29 0.27 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.15 1.71 6.09 -52.49 -0.32 1.39 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.02 5.56 -51.93 -0.29 0.73 16 36 H 0.07 0.59 6.94 -51.92 -0.36 0.23 16 37 H 0.41 5.24 6.59 -34.48 -0.23 5.01 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.62 7.35 -51.93 -0.38 0.24 16 40 H 0.07 1.15 6.43 -51.93 -0.33 0.82 16 41 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 42 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 43 H 0.01 0.26 7.41 -51.93 -0.38 -0.13 16 44 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -32.91 359.21 -9.16 -42.07 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.99 Total: 4.39 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.14 Total: -9.82 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: 0.14 Total: -65.72 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -1.90 Total: -44.20 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 52.64 SS G_CDS: -0.65 Total: 51.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.91 -9.16 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.390 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds