Wall clock time and date at job start Tue Mar 31 2020 14:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38675 * 120.78564 * 2 1 4 4 C 1.38189 * 119.15560 * 180.23047 * 3 2 1 5 5 N 1.31875 * 120.77059 * 359.78887 * 4 3 2 6 6 C 1.31859 * 121.72605 * 359.97438 * 5 4 3 7 7 C 1.38231 * 120.76484 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.41922 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46792 * 144.99992 * 8 7 6 10 10 C 1.53000 * 109.47297 * 264.99775 * 8 7 6 11 11 N 1.46498 * 109.47207 * 24.99793 * 8 7 6 12 12 S 1.65609 * 119.99588 * 144.99658 * 11 8 7 13 13 O 1.42100 * 106.40561 * 311.46138 * 12 11 8 14 14 O 1.42101 * 106.39800 * 178.53765 * 12 11 8 15 15 N 1.65602 * 107.21523 * 65.00640 * 12 11 8 16 16 C 1.46509 * 119.99400 * 269.99514 * 15 12 11 17 17 C 1.46497 * 120.00679 * 89.99672 * 15 12 11 18 18 H 1.09002 * 109.46725 * 359.97438 * 17 15 12 19 19 C 1.52997 * 109.47188 * 239.99966 * 17 15 12 20 20 C 1.50697 * 109.47081 * 119.99530 * 17 15 12 21 21 H 1.07999 * 120.00055 * 0.02562 * 20 17 15 22 22 C 1.37878 * 119.99687 * 180.02562 * 20 17 15 23 23 N 1.31511 * 120.00458 * 359.97438 * 22 20 17 24 24 Si 1.86805 * 119.99926 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.46980 * 89.99582 * 24 22 20 26 26 H 1.48493 * 109.47135 * 209.99651 * 24 22 20 27 27 H 1.48498 * 109.47274 * 330.00048 * 24 22 20 28 28 H 1.08996 * 109.47363 * 270.24258 * 1 2 3 29 29 H 1.08998 * 109.47379 * 30.25109 * 1 2 3 30 30 H 1.09006 * 109.46495 * 150.24863 * 1 2 3 31 31 H 1.07996 * 120.41986 * 0.02562 * 3 2 1 32 32 H 1.08005 * 119.60771 * 179.76918 * 4 3 2 33 33 H 1.07997 * 119.62172 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.46682 * 60.00007 * 10 8 7 35 35 H 1.09000 * 109.47619 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.46705 * 300.00135 * 10 8 7 37 37 H 0.96997 * 120.00405 * 325.00245 * 11 8 7 38 38 H 1.09003 * 109.46975 * 269.99970 * 16 15 12 39 39 H 1.08995 * 109.47277 * 30.00022 * 16 15 12 40 40 H 1.09003 * 109.46743 * 150.00508 * 16 15 12 41 41 H 1.09002 * 109.47153 * 299.99573 * 19 17 15 42 42 H 1.09001 * 109.46832 * 179.97438 * 19 17 15 43 43 H 1.09004 * 109.47261 * 59.99745 * 19 17 15 44 44 H 0.96999 * 120.00480 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1520 -0.0049 5 7 4.2403 0.0002 -0.0053 6 6 3.5984 -1.1516 -0.0006 7 6 2.2166 -1.1909 0.0055 8 6 1.4910 -2.5116 0.0113 9 1 0.5808 -2.4234 0.6046 10 6 1.1289 -2.9010 -1.4233 11 7 2.3554 -3.5412 0.5934 12 16 1.6973 -4.7543 1.5088 13 8 0.8308 -4.1265 2.4438 14 8 2.7751 -5.5972 1.8923 15 7 0.7325 -5.6549 0.5085 16 6 -0.6812 -5.3066 0.3460 17 6 1.2926 -6.7997 -0.2139 18 1 2.3499 -6.9018 0.0309 19 6 1.1373 -6.5782 -1.7197 20 6 0.5602 -8.0541 0.1876 21 1 -0.2425 -8.0035 0.9084 22 6 0.9149 -9.2663 -0.3653 23 7 1.8920 -9.3279 -1.2434 24 14 0.0066 -10.8211 0.1318 25 1 -1.1520 -11.0285 -0.7738 26 1 0.9253 -11.9837 0.0343 27 1 -0.4757 -10.6871 1.5298 28 1 -0.3634 0.0044 1.0276 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3632 -0.8923 -0.5100 31 1 1.6966 2.1378 0.0004 32 1 4.1582 2.0755 -0.0087 33 1 4.1585 -2.0749 -0.0015 34 1 2.0391 -2.9892 -2.0165 35 1 0.6036 -3.8561 -1.4191 36 1 0.4857 -2.1349 -1.8564 37 1 3.3132 -3.5124 0.4427 38 1 -1.2738 -5.8352 1.0927 39 1 -0.8080 -4.2318 0.4759 40 1 -1.0138 -5.5938 -0.6516 41 1 0.0801 -6.4759 -1.9648 42 1 1.5544 -7.4298 -2.2571 43 1 1.6670 -5.6709 -2.0101 44 1 2.1418 -10.1807 -1.6321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619751073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:22 Heat of formation + Delta-G solvation = -65.252470 kcal Electronic energy + Delta-G solvation = -27208.743668 eV Core-core repulsion = 23479.983334 eV Total energy + Delta-G solvation = -3728.760334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45850 -38.40495 -38.02515 -37.46161 -36.90927 -34.81668 -34.51104 -31.96082 -30.88856 -30.26298 -28.72429 -27.26064 -26.96472 -25.22809 -23.35063 -22.53014 -22.19097 -20.36542 -18.98825 -18.57715 -18.34624 -17.79830 -17.18999 -17.01542 -16.73294 -16.16498 -15.68946 -15.46521 -15.17592 -14.88381 -14.66633 -14.59103 -14.29570 -13.81527 -13.71980 -13.55280 -13.47422 -13.40725 -13.39174 -13.20489 -13.10076 -12.95859 -12.90033 -12.72451 -12.55744 -12.49688 -12.23825 -12.12608 -11.95679 -11.84564 -11.11986 -10.79039 -10.47850 -10.38403 -10.30272 -9.91585 -9.64273 -8.09578 -6.22643 -0.36638 0.14848 0.30586 1.42648 1.45414 1.54262 2.00437 2.44361 2.60588 2.82114 3.18940 3.30790 3.48537 3.68227 3.82932 3.91539 3.95193 4.02262 4.23727 4.26074 4.43491 4.58103 4.63921 4.70893 4.78265 4.84815 4.84924 4.92756 4.93128 5.03453 5.05908 5.17065 5.22193 5.23438 5.25833 5.35405 5.46105 5.64939 5.72184 5.79756 5.91060 6.00142 6.19995 6.34054 6.85269 7.02834 7.46317 8.94144 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024195 B = 0.003514 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.984576 B = 7965.540536 C = 8005.763131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.038 4.038 3 C -0.166 4.166 4 C 0.085 3.915 5 N -0.515 5.515 6 C 0.089 3.911 7 C -0.145 4.145 8 C 0.194 3.806 9 H 0.104 0.896 10 C -0.171 4.171 11 N -1.118 6.118 12 S 2.795 3.205 13 O -1.007 7.007 14 O -1.017 7.017 15 N -0.991 5.991 16 C 0.100 3.900 17 C 0.275 3.725 18 H 0.023 0.977 19 C -0.134 4.134 20 C -0.537 4.537 21 H 0.056 0.944 22 C 0.018 3.982 23 N -0.913 5.913 24 Si 0.953 3.047 25 H -0.269 1.269 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.169 0.831 32 H 0.180 0.820 33 H 0.151 0.849 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.418 0.582 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 21.749 -2.630 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.047 4.047 3 C -0.185 4.185 4 C -0.071 4.071 5 N -0.224 5.224 6 C -0.067 4.067 7 C -0.149 4.149 8 C 0.087 3.913 9 H 0.122 0.878 10 C -0.230 4.230 11 N -0.880 5.880 12 S 2.805 3.195 13 O -0.990 6.990 14 O -1.002 7.002 15 N -0.834 5.834 16 C -0.046 4.046 17 C 0.171 3.829 18 H 0.041 0.959 19 C -0.194 4.194 20 C -0.577 4.577 21 H 0.074 0.926 22 C -0.182 4.182 23 N -0.552 5.552 24 Si 0.779 3.221 25 H -0.194 1.194 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.186 0.814 32 H 0.197 0.803 33 H 0.168 0.832 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.255 0.745 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.303 21.466 -1.759 21.790 hybrid contribution -0.408 -1.312 -0.086 1.377 sum -3.711 20.154 -1.846 20.575 Atomic orbital electron populations 1.21070 0.88257 1.05104 1.04031 1.20517 0.98286 0.91830 0.94064 1.22375 0.95218 0.99516 1.01402 1.23293 0.92904 0.96382 0.94553 1.67694 1.42114 0.99178 1.13415 1.22585 0.91720 0.96453 0.95958 1.20811 0.95219 0.95424 1.03426 1.19720 0.92145 0.83346 0.96101 0.87792 1.22454 1.03018 1.03357 0.94143 1.56054 1.18502 1.41996 1.71477 1.01238 0.72433 0.72268 0.73597 1.93515 1.67725 1.77333 1.60455 1.93556 1.56771 1.67350 1.82485 1.57513 1.19898 1.41728 1.64231 1.21429 0.80229 0.99745 1.03161 1.18384 0.92890 0.81978 0.89682 0.95943 1.21928 1.00106 1.00084 0.97260 1.21668 1.18545 0.92811 1.24630 0.92552 1.25601 0.95867 1.01618 0.95068 1.69973 1.29409 1.26327 1.29517 0.85637 0.78594 0.79259 0.78603 1.19443 1.21194 1.20086 0.89710 0.88434 0.90072 0.81388 0.80313 0.83217 0.91957 0.90938 0.88958 0.74549 0.94055 0.90059 0.89857 0.93553 0.91875 0.94097 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.31 71.24 0.66 -0.79 16 2 C -0.04 -0.65 5.92 -19.67 -0.12 -0.77 16 3 C -0.17 -2.38 9.82 22.36 0.22 -2.16 16 4 C 0.09 1.50 11.18 84.67 0.95 2.45 16 5 N -0.51 -12.42 10.36 -195.84 -2.03 -14.45 16 6 C 0.09 2.15 10.46 84.69 0.89 3.04 16 7 C -0.15 -3.13 5.07 -19.77 -0.10 -3.23 16 8 C 0.19 4.40 2.47 44.24 0.11 4.51 16 9 H 0.10 2.26 6.03 -2.39 -0.01 2.25 16 10 C -0.17 -3.42 9.32 71.98 0.67 -2.74 16 11 N -1.12 -31.68 5.40 -172.53 -0.93 -32.61 16 12 S 2.80 106.52 6.08 -56.49 -0.34 106.17 16 13 O -1.01 -39.98 16.55 -128.00 -2.12 -42.10 16 14 O -1.02 -48.27 16.70 -128.00 -2.14 -50.41 16 15 N -0.99 -38.49 2.79 -520.44 -1.45 -39.94 16 16 C 0.10 3.13 8.39 127.77 1.07 4.21 16 17 C 0.27 13.05 2.62 44.24 0.12 13.16 16 18 H 0.02 1.24 6.91 -2.39 -0.02 1.22 16 19 C -0.13 -5.69 8.66 71.98 0.62 -5.06 16 20 C -0.54 -28.54 8.37 25.60 0.21 -28.32 16 21 H 0.06 2.98 7.65 -2.91 -0.02 2.96 16 22 C 0.02 0.98 5.30 84.66 0.45 1.43 16 23 N -0.91 -50.77 11.32 21.45 0.24 -50.53 16 24 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 0.66 8.10 -2.39 -0.02 0.64 16 30 H 0.08 0.87 5.61 -2.38 -0.01 0.86 16 31 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.15 3.44 6.09 -2.91 -0.02 3.42 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.62 5.56 -2.39 -0.01 1.60 16 36 H 0.09 1.35 6.94 -2.38 -0.02 1.33 16 37 H 0.42 10.86 6.59 -96.74 -0.64 10.22 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.96 7.35 -2.39 -0.02 1.95 16 40 H 0.08 2.45 6.43 -2.39 -0.02 2.43 16 41 H 0.05 1.80 6.66 -2.39 -0.02 1.78 16 42 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 43 H 0.04 1.47 7.41 -2.38 -0.02 1.45 16 44 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -72.08 359.21 -0.60 -72.68 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.39 Total: 20.44 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 5.75 Total: -14.28 kcal Atomic # 7 Polarization: -133.37 SS G_CDS: -4.17 Total: -137.54 kcal Atomic # 8 Polarization: -88.26 SS G_CDS: -4.26 Total: -92.52 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 106.52 SS G_CDS: -0.34 Total: 106.17 kcal Total: -72.08 -0.60 -72.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.428 kcal (2) G-P(sol) polarization free energy of solvation -72.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds