Wall clock time and date at job start Tue Mar 31 2020 14:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38674 * 120.41487 * 2 1 4 4 C 1.38624 * 118.41829 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.16332 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.61704 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46982 * 95.00119 * 6 5 4 8 8 C 1.46500 * 119.99686 * 274.99203 * 7 6 5 9 9 S 1.65596 * 120.00209 * 95.00032 * 7 6 5 10 10 O 1.42103 * 106.39869 * 336.45436 * 9 7 6 11 11 O 1.42099 * 106.40196 * 203.53434 * 9 7 6 12 12 N 1.65594 * 107.21909 * 89.99552 * 9 7 6 13 13 C 1.46505 * 119.99845 * 269.99893 * 12 9 7 14 14 C 1.46500 * 120.00077 * 90.00126 * 12 9 7 15 15 H 1.09000 * 109.47175 * 359.97438 * 14 12 9 16 16 C 1.53006 * 109.46998 * 119.99765 * 14 12 9 17 17 C 1.50697 * 109.46896 * 239.99694 * 14 12 9 18 18 H 1.07994 * 120.00496 * 0.02562 * 17 14 12 19 19 C 1.37887 * 119.99690 * 179.97438 * 17 14 12 20 20 N 1.31507 * 120.00093 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99676 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47116 * 60.00382 * 21 19 17 23 23 H 1.48503 * 109.46756 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47119 * 300.00049 * 21 19 17 25 25 N 1.31851 * 120.76077 * 0.25647 * 5 4 3 26 26 C 1.31886 * 121.72517 * 359.47158 * 25 5 4 27 27 H 1.08996 * 109.47782 * 90.00055 * 1 2 3 28 28 H 1.09000 * 109.46551 * 210.00087 * 1 2 3 29 29 H 1.09005 * 109.47128 * 329.99569 * 1 2 3 30 30 H 1.07999 * 120.79295 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.42034 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47309 * 334.99516 * 6 5 4 33 33 H 1.09007 * 109.46537 * 214.99628 * 6 5 4 34 34 H 1.09006 * 109.47289 * 270.00437 * 8 7 6 35 35 H 1.08997 * 109.46831 * 30.00441 * 8 7 6 36 36 H 1.09000 * 109.47234 * 150.00425 * 8 7 6 37 37 H 1.09004 * 109.47130 * 270.00127 * 13 12 9 38 38 H 1.08997 * 109.47212 * 29.99879 * 13 12 9 39 39 H 1.09003 * 109.46772 * 150.00492 * 13 12 9 40 40 H 1.09001 * 109.47002 * 179.97438 * 16 14 12 41 41 H 1.08993 * 109.46955 * 300.00226 * 16 14 12 42 42 H 1.09000 * 109.47050 * 60.00054 * 16 14 12 43 43 H 0.96999 * 120.00118 * 179.97438 * 20 19 17 44 44 H 1.08004 * 119.61880 * 180.26537 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2256 -0.0822 -0.0005 6 6 5.7313 -0.1467 -0.0017 7 7 6.2151 -0.2873 1.3740 8 6 6.4068 0.9017 2.2081 9 16 6.5454 -1.7901 1.9860 10 8 5.7793 -2.7116 1.2223 11 8 6.4448 -1.6789 3.3990 12 7 8.1349 -2.1158 1.6546 13 6 8.5002 -2.7841 0.4031 14 6 9.1757 -1.7357 2.6130 15 1 8.7165 -1.2536 3.4760 16 6 9.9309 -2.9860 3.0684 17 6 10.1376 -0.7791 1.9566 18 1 9.9883 -0.4835 0.9287 19 6 11.2077 -0.2804 2.6690 20 7 11.3887 -0.6392 3.9211 21 14 12.3996 0.9059 1.8556 22 1 11.6662 2.1192 1.4136 23 1 13.4541 1.2921 2.8274 24 1 13.0257 0.2500 0.6797 25 7 3.5255 -1.1995 -0.0051 26 6 2.2067 -1.1916 0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6889 2.1424 0.0004 31 1 4.1734 2.0593 -0.0001 32 1 6.1337 0.7680 -0.4368 33 1 6.0577 -1.0036 -0.5910 34 1 7.4235 1.2740 2.0819 35 1 5.6975 1.6735 1.9090 36 1 6.2419 0.6424 3.2538 37 1 8.4997 -3.8637 0.5542 38 1 7.7780 -2.5253 -0.3712 39 1 9.4946 -2.4608 0.0954 40 1 10.7056 -2.7031 3.7811 41 1 9.2351 -3.6779 3.5430 42 1 10.3901 -3.4677 2.2051 43 1 12.1417 -0.2886 4.4221 44 1 1.6672 -2.1272 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619751574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:00 Heat of formation + Delta-G solvation = -34.875383 kcal Electronic energy + Delta-G solvation = -27025.101135 eV Core-core repulsion = 23297.658050 eV Total energy + Delta-G solvation = -3727.443084 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33535 -36.59069 -36.19487 -36.05876 -35.06502 -33.53510 -32.57125 -31.99368 -29.06917 -28.95643 -26.25424 -25.44859 -25.15633 -24.43515 -23.25326 -21.49177 -20.65550 -18.36704 -17.22592 -16.87929 -16.54977 -16.47198 -16.15490 -15.60283 -15.23095 -14.87243 -14.40674 -14.02814 -13.88790 -13.39870 -13.31707 -13.13760 -12.83922 -12.78131 -12.65817 -12.54275 -12.42145 -11.95548 -11.90109 -11.70367 -11.65351 -11.27960 -11.15844 -11.10739 -11.04092 -10.90286 -10.85938 -10.40805 -10.18677 -10.02945 -9.82733 -9.41361 -9.27356 -8.91234 -8.70169 -8.47249 -7.89278 -6.08304 -4.16935 0.93865 1.24496 1.39192 3.25057 3.31370 3.31883 3.47149 3.81885 4.21205 4.29634 4.36335 4.60858 4.68777 4.79505 4.88813 5.02747 5.10883 5.21770 5.28427 5.31986 5.42782 5.58269 5.60255 5.69755 5.73649 5.80717 5.93775 6.03183 6.13567 6.21172 6.24098 6.27323 6.42653 6.65140 6.68698 6.82282 6.91888 6.97164 7.15752 7.55217 7.64943 7.80808 8.06821 8.07479 8.28358 8.86218 9.49114 10.96636 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.003755 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.912630 B = 7454.530809 C = 8071.081490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.145 4.145 3 C -0.082 4.082 4 C -0.155 4.155 5 C 0.103 3.897 6 C 0.179 3.821 7 N -1.003 6.003 8 C 0.087 3.913 9 S 2.775 3.225 10 O -0.972 6.972 11 O -0.983 6.983 12 N -0.991 5.991 13 C 0.108 3.892 14 C 0.268 3.732 15 H 0.057 0.943 16 C -0.145 4.145 17 C -0.526 4.526 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.887 5.887 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 N -0.447 5.447 26 C 0.098 3.902 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.012 0.988 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 4.372 -8.940 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C -0.108 4.108 4 C -0.176 4.176 5 C -0.037 4.037 6 C 0.052 3.948 7 N -0.840 5.840 8 C -0.059 4.059 9 S 2.784 3.216 10 O -0.955 6.955 11 O -0.967 6.967 12 N -0.834 5.834 13 C -0.039 4.039 14 C 0.165 3.835 15 H 0.075 0.925 16 C -0.204 4.204 17 C -0.565 4.565 18 H 0.080 0.920 19 C -0.138 4.138 20 N -0.525 5.525 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 N -0.155 5.155 26 C -0.060 4.060 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.031 0.969 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.823 3.051 -8.309 18.131 hybrid contribution 0.542 1.837 -0.579 2.001 sum -15.282 4.888 -8.888 18.342 Atomic orbital electron populations 1.20702 0.90381 1.03041 1.02405 1.20979 0.97496 0.94456 1.01751 1.21434 0.94007 0.98027 0.97371 1.22004 0.95097 0.99007 1.01462 1.21850 0.97573 0.88555 0.95723 1.19963 0.86786 1.04322 0.83707 1.58022 1.80070 1.24988 1.20912 1.21542 1.02019 0.87230 0.95060 1.02212 0.73178 0.72904 0.73288 1.93610 1.69203 1.60320 1.72405 1.93553 1.86694 1.86451 1.30036 1.57838 1.25120 1.71676 1.28744 1.21173 1.01831 0.96141 0.84712 1.18699 0.84960 0.93005 0.86873 0.92531 1.22052 1.00769 0.96822 1.00800 1.21352 1.09912 1.26384 0.98852 0.91963 1.24929 0.97564 0.96512 0.94826 1.69872 1.30260 1.43847 1.08520 0.86601 0.80635 0.81261 0.79086 1.20290 1.21294 1.20291 1.67712 1.07741 1.30608 1.09451 1.22769 0.89965 0.97408 0.95894 0.91036 0.91178 0.91492 0.85050 0.84771 0.88931 0.88622 0.91443 0.91967 0.90329 0.93941 0.93266 0.90344 0.88963 0.96936 0.94883 0.92598 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.04 36.01 0.36 -0.39 16 2 C -0.14 -1.50 5.90 -104.48 -0.62 -2.12 16 3 C -0.08 -0.83 9.86 -39.28 -0.39 -1.21 16 4 C -0.16 -1.76 9.67 -39.44 -0.38 -2.14 16 5 C 0.10 1.47 6.36 -82.58 -0.53 0.95 16 6 C 0.18 2.57 5.63 -5.19 -0.03 2.54 16 7 N -1.00 -17.14 3.23 -123.05 -0.40 -17.54 16 8 C 0.09 1.35 10.68 59.85 0.64 1.99 16 9 S 2.77 57.97 6.01 -107.50 -0.65 57.32 16 10 O -0.97 -20.98 15.74 -57.17 -0.90 -21.88 16 11 O -0.98 -23.66 15.30 -57.17 -0.88 -24.53 16 12 N -0.99 -21.24 3.12 -115.84 -0.36 -21.60 16 13 C 0.11 1.98 9.28 59.85 0.56 2.54 16 14 C 0.27 6.62 2.62 -69.08 -0.18 6.44 16 15 H 0.06 1.55 6.91 -51.93 -0.36 1.20 16 16 C -0.14 -3.52 8.97 37.16 0.33 -3.19 16 17 C -0.53 -13.39 7.99 -34.44 -0.28 -13.67 16 18 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 20 N -0.89 -24.28 11.32 55.43 0.63 -23.66 16 21 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 N -0.45 -7.16 9.83 -9.47 -0.09 -7.26 16 26 C 0.10 1.26 10.86 -17.55 -0.19 1.07 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.09 1.03 8.01 -51.93 -0.42 0.62 16 33 H 0.10 1.40 7.26 -51.93 -0.38 1.02 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.75 8.02 -51.93 -0.42 0.33 16 36 H 0.08 1.33 7.02 -51.93 -0.36 0.97 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.78 7.44 -51.93 -0.39 0.40 16 39 H 0.08 1.45 7.02 -51.93 -0.36 1.08 16 40 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -32.93 372.59 -9.56 -42.49 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.72 Total: 1.52 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.79 Total: -5.61 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -0.22 Total: -70.05 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -1.78 Total: -46.41 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 57.97 SS G_CDS: -0.65 Total: 57.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.93 -9.56 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.612 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds