Wall clock time and date at job start Tue Mar 31 2020 14:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38674 * 120.41487 * 2 1 4 4 C 1.38624 * 118.41829 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.16332 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.61704 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46982 * 95.00119 * 6 5 4 8 8 C 1.46500 * 119.99686 * 274.99203 * 7 6 5 9 9 S 1.65596 * 120.00209 * 95.00032 * 7 6 5 10 10 O 1.42103 * 106.39869 * 336.45436 * 9 7 6 11 11 O 1.42099 * 106.40196 * 203.53434 * 9 7 6 12 12 N 1.65594 * 107.21909 * 89.99552 * 9 7 6 13 13 C 1.46505 * 119.99845 * 269.99893 * 12 9 7 14 14 C 1.46500 * 120.00077 * 90.00126 * 12 9 7 15 15 H 1.09000 * 109.47175 * 359.97438 * 14 12 9 16 16 C 1.53006 * 109.46998 * 119.99765 * 14 12 9 17 17 C 1.50697 * 109.46896 * 239.99694 * 14 12 9 18 18 H 1.07994 * 120.00496 * 0.02562 * 17 14 12 19 19 C 1.37887 * 119.99690 * 179.97438 * 17 14 12 20 20 N 1.31507 * 120.00093 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99676 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47116 * 60.00382 * 21 19 17 23 23 H 1.48503 * 109.46756 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47119 * 300.00049 * 21 19 17 25 25 N 1.31851 * 120.76077 * 0.25647 * 5 4 3 26 26 C 1.31886 * 121.72517 * 359.47158 * 25 5 4 27 27 H 1.08996 * 109.47782 * 90.00055 * 1 2 3 28 28 H 1.09000 * 109.46551 * 210.00087 * 1 2 3 29 29 H 1.09005 * 109.47128 * 329.99569 * 1 2 3 30 30 H 1.07999 * 120.79295 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.42034 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47309 * 334.99516 * 6 5 4 33 33 H 1.09007 * 109.46537 * 214.99628 * 6 5 4 34 34 H 1.09006 * 109.47289 * 270.00437 * 8 7 6 35 35 H 1.08997 * 109.46831 * 30.00441 * 8 7 6 36 36 H 1.09000 * 109.47234 * 150.00425 * 8 7 6 37 37 H 1.09004 * 109.47130 * 270.00127 * 13 12 9 38 38 H 1.08997 * 109.47212 * 29.99879 * 13 12 9 39 39 H 1.09003 * 109.46772 * 150.00492 * 13 12 9 40 40 H 1.09001 * 109.47002 * 179.97438 * 16 14 12 41 41 H 1.08993 * 109.46955 * 300.00226 * 16 14 12 42 42 H 1.09000 * 109.47050 * 60.00054 * 16 14 12 43 43 H 0.96999 * 120.00118 * 179.97438 * 20 19 17 44 44 H 1.08004 * 119.61880 * 180.26537 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2256 -0.0822 -0.0005 6 6 5.7313 -0.1467 -0.0017 7 7 6.2151 -0.2873 1.3740 8 6 6.4068 0.9017 2.2081 9 16 6.5454 -1.7901 1.9860 10 8 5.7793 -2.7116 1.2223 11 8 6.4448 -1.6789 3.3990 12 7 8.1349 -2.1158 1.6546 13 6 8.5002 -2.7841 0.4031 14 6 9.1757 -1.7357 2.6130 15 1 8.7165 -1.2536 3.4760 16 6 9.9309 -2.9860 3.0684 17 6 10.1376 -0.7791 1.9566 18 1 9.9883 -0.4835 0.9287 19 6 11.2077 -0.2804 2.6690 20 7 11.3887 -0.6392 3.9211 21 14 12.3996 0.9059 1.8556 22 1 11.6662 2.1192 1.4136 23 1 13.4541 1.2921 2.8274 24 1 13.0257 0.2500 0.6797 25 7 3.5255 -1.1995 -0.0051 26 6 2.2067 -1.1916 0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6889 2.1424 0.0004 31 1 4.1734 2.0593 -0.0001 32 1 6.1337 0.7680 -0.4368 33 1 6.0577 -1.0036 -0.5910 34 1 7.4235 1.2740 2.0819 35 1 5.6975 1.6735 1.9090 36 1 6.2419 0.6424 3.2538 37 1 8.4997 -3.8637 0.5542 38 1 7.7780 -2.5253 -0.3712 39 1 9.4946 -2.4608 0.0954 40 1 10.7056 -2.7031 3.7811 41 1 9.2351 -3.6779 3.5430 42 1 10.3901 -3.4677 2.2051 43 1 12.1417 -0.2886 4.4221 44 1 1.6672 -2.1272 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619751574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:59 Heat of formation + Delta-G solvation = -57.212703 kcal Electronic energy + Delta-G solvation = -27026.069753 eV Core-core repulsion = 23297.658050 eV Total energy + Delta-G solvation = -3728.411703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22610 -38.32212 -37.86344 -37.39035 -36.80161 -34.48767 -34.40908 -32.88575 -30.92583 -29.92021 -27.26364 -27.25129 -26.98690 -25.50923 -24.15796 -22.54948 -22.38875 -19.89938 -18.76606 -18.44125 -18.32377 -17.55725 -17.38568 -17.07094 -16.52440 -15.99950 -15.81439 -15.26143 -15.06526 -14.88010 -14.76926 -14.45881 -14.12183 -13.84669 -13.71512 -13.68638 -13.53422 -13.45487 -13.26253 -13.21576 -13.13081 -12.94674 -12.72499 -12.65713 -12.60223 -12.54290 -12.33379 -12.19897 -12.11105 -11.85291 -11.18852 -10.68123 -10.47482 -10.42223 -9.97891 -9.77101 -9.60081 -8.06427 -6.21977 -0.34486 0.17118 0.42052 1.49178 1.50109 1.57625 2.01969 2.47522 2.57581 2.90817 3.21657 3.34347 3.47923 3.73063 3.90967 3.97012 4.11411 4.12043 4.17466 4.40259 4.50019 4.63207 4.71006 4.73222 4.78040 4.78648 4.84292 4.88773 4.95035 4.95487 4.99288 5.05455 5.14885 5.20718 5.21994 5.25364 5.37538 5.51730 5.62999 5.75797 5.84146 5.89047 6.12137 6.30516 6.87150 7.15500 7.47751 8.98241 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.003755 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.912630 B = 7454.530809 C = 8071.081490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.137 4.137 3 C -0.084 4.084 4 C -0.150 4.150 5 C 0.073 3.927 6 C 0.174 3.826 7 N -0.998 5.998 8 C 0.086 3.914 9 S 2.784 3.216 10 O -0.983 6.983 11 O -1.023 7.023 12 N -0.998 5.998 13 C 0.103 3.897 14 C 0.274 3.726 15 H 0.021 0.979 16 C -0.140 4.140 17 C -0.529 4.529 18 H 0.071 0.929 19 C 0.016 3.984 20 N -0.920 5.920 21 Si 0.961 3.039 22 H -0.267 1.267 23 H -0.291 1.291 24 H -0.271 1.271 25 N -0.494 5.494 26 C 0.070 3.930 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.014 0.986 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.995 6.636 -10.988 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C -0.109 4.109 4 C -0.170 4.170 5 C -0.066 4.066 6 C 0.048 3.952 7 N -0.838 5.838 8 C -0.059 4.059 9 S 2.794 3.206 10 O -0.966 6.966 11 O -1.007 7.007 12 N -0.840 5.840 13 C -0.043 4.043 14 C 0.169 3.831 15 H 0.039 0.961 16 C -0.199 4.199 17 C -0.568 4.568 18 H 0.089 0.911 19 C -0.183 4.183 20 N -0.559 5.559 21 Si 0.786 3.214 22 H -0.192 1.192 23 H -0.217 1.217 24 H -0.196 1.196 25 N -0.203 5.203 26 C -0.087 4.087 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.184 0.816 31 H 0.180 0.820 32 H 0.146 0.854 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.018 5.295 -10.383 20.627 hybrid contribution 0.767 1.130 0.023 1.366 sum -16.251 6.425 -10.360 20.315 Atomic orbital electron populations 1.20779 0.87855 1.04073 1.03603 1.21348 0.99293 0.93768 0.99535 1.21897 0.93730 0.99271 0.96049 1.22296 0.96030 0.98774 0.99947 1.21872 0.97276 0.89482 0.97995 1.20249 0.87597 1.05634 0.81713 1.57700 1.79839 1.23832 1.22428 1.21628 1.02936 0.87444 0.93846 1.01692 0.72889 0.73651 0.72344 1.93588 1.69236 1.61534 1.72266 1.93494 1.87131 1.87268 1.32839 1.57745 1.24495 1.72474 1.29251 1.21357 1.02560 0.96337 0.84038 1.18380 0.85284 0.92807 0.86581 0.96074 1.21959 1.00281 0.96970 1.00728 1.21574 1.09834 1.26250 0.99131 0.91105 1.25716 0.99257 0.98112 0.95235 1.70020 1.30852 1.45076 1.09934 0.85572 0.78333 0.79408 0.78044 1.19191 1.21682 1.19568 1.67581 1.09403 1.32295 1.11042 1.23054 0.89483 0.99060 0.97122 0.89583 0.90790 0.89862 0.81565 0.81983 0.85399 0.89595 0.92008 0.87800 0.92530 0.93355 0.90892 0.90311 0.91039 0.96676 0.93726 0.92748 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.04 71.24 0.72 -0.44 16 2 C -0.14 -2.54 5.90 -19.77 -0.12 -2.66 16 3 C -0.08 -1.39 9.86 22.47 0.22 -1.17 16 4 C -0.15 -2.94 9.67 22.36 0.22 -2.73 16 5 C 0.07 1.99 6.36 42.56 0.27 2.26 16 6 C 0.17 4.72 5.63 85.63 0.48 5.20 16 7 N -1.00 -33.54 3.23 -543.21 -1.75 -35.29 16 8 C 0.09 2.62 10.68 127.77 1.36 3.98 16 9 S 2.78 118.44 6.01 -56.49 -0.34 118.10 16 10 O -0.98 -43.08 15.74 -128.00 -2.01 -45.09 16 11 O -1.02 -51.26 15.30 -128.00 -1.96 -53.22 16 12 N -1.00 -43.12 3.12 -520.42 -1.62 -44.75 16 13 C 0.10 3.71 9.28 127.77 1.19 4.89 16 14 C 0.27 13.83 2.62 44.25 0.12 13.94 16 15 H 0.02 1.23 6.91 -2.39 -0.02 1.21 16 16 C -0.14 -6.96 8.97 71.98 0.65 -6.31 16 17 C -0.53 -26.87 7.99 25.60 0.20 -26.67 16 18 H 0.07 3.41 7.33 -2.91 -0.02 3.39 16 19 C 0.02 0.85 5.30 84.66 0.45 1.30 16 20 N -0.92 -51.23 11.32 21.45 0.24 -50.99 16 21 Si 0.96 40.79 29.54 68.60 2.03 42.82 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 N -0.49 -15.74 9.83 -183.88 -1.81 -17.54 16 26 C 0.07 1.77 10.86 84.67 0.92 2.69 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 29 H 0.08 0.67 8.10 -2.38 -0.02 0.65 16 30 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.13 2.48 8.01 -2.39 -0.02 2.46 16 33 H 0.09 2.46 7.26 -2.38 -0.02 2.44 16 34 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.10 2.22 8.02 -2.39 -0.02 2.21 16 36 H 0.06 1.96 7.02 -2.39 -0.02 1.94 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 2.26 7.44 -2.39 -0.02 2.24 16 39 H 0.08 2.83 7.02 -2.39 -0.02 2.81 16 40 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 41 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.04 2.05 7.67 -2.39 -0.02 2.03 16 43 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -73.16 372.59 0.43 -72.72 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.99 Total: 18.94 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 6.67 Total: -5.70 kcal Atomic # 7 Polarization: -143.63 SS G_CDS: -4.94 Total: -148.57 kcal Atomic # 8 Polarization: -94.34 SS G_CDS: -3.97 Total: -98.31 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 118.44 SS G_CDS: -0.34 Total: 118.10 kcal Total: -73.16 0.43 -72.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.511 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds