Wall clock time and date at job start Tue Mar 31 2020 14:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38664 * 120.41840 * 2 1 4 4 C 1.38635 * 118.41987 * 180.24404 * 3 2 1 5 5 C 1.38226 * 119.16147 * 359.74582 * 4 3 2 6 6 N 1.31856 * 120.75940 * 0.02562 * 5 4 3 7 7 C 1.31885 * 121.72836 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.61635 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47247 * 89.99969 * 8 7 6 10 10 C 1.34773 * 120.00438 * 179.72209 * 9 8 7 11 11 O 1.21589 * 119.99334 * 0.28117 * 10 9 8 12 12 N 1.34773 * 120.00655 * 180.27235 * 10 9 8 13 13 C 1.39941 * 120.00532 * 175.49503 * 12 10 9 14 14 C 1.38961 * 120.03623 * 214.85832 * 13 12 10 15 15 C 1.38161 * 120.06323 * 179.74263 * 14 13 12 16 16 C 1.38170 * 120.13850 * 0.55580 * 15 14 13 17 17 C 1.38908 * 120.07079 * 359.69570 * 16 15 14 18 18 O 1.35748 * 120.03234 * 179.97438 * 17 16 15 19 19 C 1.34825 * 117.00090 * 5.37220 * 18 17 16 20 20 H 1.07996 * 120.00273 * 354.95714 * 19 18 17 21 21 C 1.38652 * 120.00326 * 174.96127 * 19 18 17 22 22 N 1.31554 * 120.00328 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99661 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46776 * 90.00170 * 23 21 19 25 25 H 1.48498 * 109.47006 * 209.99849 * 23 21 19 26 26 H 1.48494 * 109.47146 * 330.00104 * 23 21 19 27 27 C 1.38701 * 120.03467 * 35.12937 * 13 12 10 28 28 H 1.08998 * 109.47456 * 270.25275 * 1 2 3 29 29 H 1.09002 * 109.47208 * 30.25309 * 1 2 3 30 30 H 1.08997 * 109.46983 * 150.25279 * 1 2 3 31 31 H 1.07998 * 120.79084 * 359.97054 * 3 2 1 32 32 H 1.08004 * 120.41970 * 179.73318 * 4 3 2 33 33 H 1.07993 * 119.62323 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47186 * 329.99669 * 8 7 6 35 35 H 1.09000 * 109.46961 * 210.00223 * 8 7 6 36 36 H 0.97007 * 119.99869 * 359.97438 * 9 8 7 37 37 H 0.97000 * 119.99333 * 355.50350 * 12 10 9 38 38 H 1.08003 * 119.96613 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.92741 * 180.27129 * 15 14 13 40 40 H 1.07998 * 119.96071 * 179.71782 * 16 15 14 41 41 H 0.97000 * 120.00295 * 179.97438 * 22 21 19 42 42 H 1.08011 * 120.06903 * 359.95704 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 -0.0052 5 6 4.2256 -0.0824 -0.0048 6 7 3.5254 -1.1996 -0.0001 7 6 2.2066 -1.1916 0.0049 8 6 1.4539 -2.4972 0.0096 9 7 1.2152 -2.9184 1.3923 10 6 0.5494 -4.0631 1.6428 11 8 0.1514 -4.7489 0.7210 12 7 0.3251 -4.4478 2.9148 13 6 -0.4467 -5.5855 3.1760 14 6 -1.2727 -5.6243 4.2929 15 6 -2.0389 -6.7452 4.5484 16 6 -1.9780 -7.8351 3.7013 17 6 -1.1504 -7.8044 2.5861 18 8 -1.0908 -8.8759 1.7547 19 6 -1.9407 -9.8923 2.0042 20 1 -2.5702 -9.8670 2.8813 21 6 -2.0065 -10.9703 1.1347 22 7 -2.8354 -11.9624 1.3784 23 14 -0.9181 -11.0140 -0.3829 24 1 0.3677 -11.6786 -0.0508 25 1 -1.6027 -11.7712 -1.4614 26 1 -0.6541 -9.6269 -0.8427 27 6 -0.3839 -6.6778 2.3235 28 1 -0.3634 0.0045 1.0276 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6889 2.1422 -0.0005 32 1 4.1736 2.0591 -0.0097 33 1 5.3046 -0.1287 -0.0084 34 1 2.0414 -3.2572 -0.5055 35 1 0.4994 -2.3681 -0.5008 36 1 1.5332 -2.3714 2.1277 37 1 0.6985 -3.9359 3.6492 38 1 -1.3185 -4.7760 4.9597 39 1 -2.6834 -6.7713 5.4146 40 1 -2.5748 -8.7115 3.9063 41 1 -2.8818 -12.7164 0.7699 42 1 0.2601 -6.6515 1.4568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729556815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:08 Heat of formation + Delta-G solvation = 17.686375 kcal Electronic energy + Delta-G solvation = -26076.491633 eV Core-core repulsion = 22215.883846 eV Total energy + Delta-G solvation = -3860.607787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.96685 -40.22631 -38.81398 -36.83190 -35.25657 -34.11842 -33.98923 -32.33909 -32.27418 -29.60059 -28.78178 -27.87256 -26.61302 -25.12787 -23.14867 -22.59541 -21.93061 -21.29363 -20.65180 -18.63507 -18.08442 -17.44795 -17.24096 -16.75701 -16.08017 -15.45500 -15.25640 -15.13262 -15.07899 -14.58705 -14.24614 -14.10581 -13.85293 -13.61437 -13.52117 -13.44143 -13.18037 -13.01676 -12.81101 -12.63017 -12.28859 -12.21391 -11.73267 -11.56218 -11.15944 -10.92984 -10.78969 -10.27814 -10.17566 -9.94743 -9.86315 -9.68816 -9.34892 -9.25861 -9.15567 -8.79039 -7.71612 -7.24447 -6.33952 -4.00223 0.53691 0.80065 2.06060 2.30009 2.62895 3.27857 3.32981 3.34000 3.37332 3.53140 3.80141 4.20016 4.20438 4.33708 4.35033 4.44554 4.54088 4.58125 4.91495 4.98402 5.11357 5.11555 5.19461 5.21459 5.28423 5.49136 5.61764 5.65885 5.73028 5.78243 5.81509 6.12024 6.17705 6.21794 6.25518 6.35500 6.47094 6.75007 6.99263 7.14916 7.21277 7.40153 7.54729 7.66845 7.88354 7.99089 8.11110 8.63108 9.01928 9.65933 10.73478 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.002456 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.703974 B =11396.223652 C =12384.319764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.115 4.115 3 C -0.080 4.080 4 C -0.163 4.163 5 C 0.092 3.908 6 N -0.464 5.464 7 C 0.106 3.894 8 C 0.188 3.812 9 N -0.739 5.739 10 C 0.702 3.298 11 O -0.560 6.560 12 N -0.681 5.681 13 C 0.191 3.809 14 C -0.228 4.228 15 C -0.060 4.060 16 C -0.234 4.234 17 C 0.173 3.827 18 O -0.214 6.214 19 C -0.387 4.387 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.881 5.881 23 Si 0.902 3.098 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.256 1.256 27 C -0.186 4.186 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.395 0.605 37 H 0.402 0.598 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.279 0.721 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.459 28.797 0.960 30.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.117 4.117 3 C -0.106 4.106 4 C -0.183 4.183 5 C -0.066 4.066 6 N -0.172 5.172 7 C -0.032 4.032 8 C 0.064 3.936 9 N -0.396 5.396 10 C 0.402 3.598 11 O -0.435 6.435 12 N -0.328 5.328 13 C 0.098 3.902 14 C -0.250 4.250 15 C -0.079 4.079 16 C -0.253 4.253 17 C 0.120 3.880 18 O -0.119 6.119 19 C -0.463 4.463 20 H 0.125 0.875 21 C -0.139 4.139 22 N -0.519 5.519 23 Si 0.728 3.272 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.180 1.180 27 C -0.207 4.207 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.175 0.825 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.228 0.772 37 H 0.236 0.764 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.594 27.106 -0.239 29.104 hybrid contribution 0.337 1.328 0.183 1.383 sum 10.931 28.435 -0.056 30.464 Atomic orbital electron populations 1.20894 0.89781 1.03722 1.03194 1.20819 0.97851 0.93395 0.99654 1.21531 0.94184 0.98142 0.96761 1.22219 0.95312 0.99776 1.00978 1.22792 1.00461 0.87490 0.95865 1.67526 1.07553 1.31691 1.10436 1.21067 0.89843 0.94349 0.97924 1.19944 0.99122 0.91434 0.83120 1.44922 1.62069 1.24432 1.08134 1.15881 0.79198 0.81206 0.83511 1.91019 1.55258 1.54082 1.43159 1.42426 1.54888 1.29034 1.06429 1.16915 0.92861 0.84712 0.95758 1.20307 1.03386 1.00368 1.00919 1.20534 0.97002 0.92441 0.97932 1.21292 1.05540 1.00935 0.97573 1.18875 0.92887 0.86856 0.89351 1.83585 1.55129 1.24041 1.49118 1.20780 1.18220 0.95871 1.11407 0.87548 1.24449 0.96692 0.94264 0.98530 1.69646 1.35512 1.08552 1.38193 0.86214 0.80069 0.79553 0.81398 1.19910 1.20859 1.18029 1.20205 1.06190 0.90793 1.03554 0.90431 0.91084 0.90270 0.84612 0.84597 0.82509 0.89583 0.89397 0.77209 0.76358 0.87285 0.86789 0.84878 0.91130 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.62 36.01 0.35 -0.38 16 2 C -0.11 -0.85 5.90 -104.49 -0.62 -1.47 16 3 C -0.08 -0.48 9.86 -39.28 -0.39 -0.86 16 4 C -0.16 -0.92 10.11 -39.44 -0.40 -1.32 16 5 C 0.09 0.67 11.18 -17.55 -0.20 0.48 16 6 N -0.46 -4.67 10.27 -9.47 -0.10 -4.77 16 7 C 0.11 1.00 6.15 -82.59 -0.51 0.49 16 8 C 0.19 2.04 5.56 -5.19 -0.03 2.01 16 9 N -0.74 -8.06 5.55 -66.41 -0.37 -8.43 16 10 C 0.70 10.70 8.41 -86.92 -0.73 9.97 16 11 O -0.56 -11.33 13.78 5.29 0.07 -11.26 16 12 N -0.68 -9.56 5.34 -14.24 -0.08 -9.64 16 13 C 0.19 3.48 6.30 -83.72 -0.53 2.95 16 14 C -0.23 -3.80 9.96 -39.34 -0.39 -4.19 16 15 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 16 C -0.23 -5.17 9.17 -39.36 -0.36 -5.53 16 17 C 0.17 4.26 6.64 -39.14 -0.26 4.00 16 18 O -0.21 -5.99 8.58 0.07 0.00 -5.98 16 19 C -0.39 -11.29 9.94 30.89 0.31 -10.98 16 20 H 0.11 3.13 5.43 -52.49 -0.29 2.84 16 21 C 0.06 1.85 5.49 -17.52 -0.10 1.75 16 22 N -0.88 -26.07 13.96 55.48 0.77 -25.29 16 23 Si 0.90 22.76 28.62 -169.99 -4.86 17.90 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.26 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.19 -4.15 8.64 -39.21 -0.34 -4.49 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 30 H 0.08 0.55 5.95 -51.93 -0.31 0.24 16 31 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 33 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 0.93 5.93 -51.93 -0.31 0.62 16 36 H 0.39 3.26 8.48 -40.82 -0.35 2.91 16 37 H 0.40 3.95 8.84 -40.82 -0.36 3.59 16 38 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.13 3.06 5.63 -52.49 -0.30 2.77 16 41 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.14 3.23 6.22 -52.48 -0.33 2.91 16 LS Contribution 359.87 15.07 5.42 5.42 Total: -1.00 -35.23 359.87 -8.47 -43.70 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.75 Total: 7.43 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -4.58 Total: -9.07 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.23 Total: -48.13 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.07 Total: -17.24 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.86 Total: 17.90 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.23 -8.47 -43.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729556815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.384 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds