Wall clock time and date at job start Tue Mar 31 2020 14:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38664 * 120.41840 * 2 1 4 4 C 1.38635 * 118.41987 * 180.24404 * 3 2 1 5 5 C 1.38226 * 119.16147 * 359.74582 * 4 3 2 6 6 N 1.31856 * 120.75940 * 0.02562 * 5 4 3 7 7 C 1.31885 * 121.72836 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.61635 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47247 * 89.99969 * 8 7 6 10 10 C 1.34773 * 120.00438 * 179.72209 * 9 8 7 11 11 O 1.21589 * 119.99334 * 0.28117 * 10 9 8 12 12 N 1.34773 * 120.00655 * 180.27235 * 10 9 8 13 13 C 1.39941 * 120.00532 * 175.49503 * 12 10 9 14 14 C 1.38961 * 120.03623 * 214.85832 * 13 12 10 15 15 C 1.38161 * 120.06323 * 179.74263 * 14 13 12 16 16 C 1.38170 * 120.13850 * 0.55580 * 15 14 13 17 17 C 1.38908 * 120.07079 * 359.69570 * 16 15 14 18 18 O 1.35748 * 120.03234 * 179.97438 * 17 16 15 19 19 C 1.34825 * 117.00090 * 5.37220 * 18 17 16 20 20 H 1.07996 * 120.00273 * 354.95714 * 19 18 17 21 21 C 1.38652 * 120.00326 * 174.96127 * 19 18 17 22 22 N 1.31554 * 120.00328 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99661 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46776 * 90.00170 * 23 21 19 25 25 H 1.48498 * 109.47006 * 209.99849 * 23 21 19 26 26 H 1.48494 * 109.47146 * 330.00104 * 23 21 19 27 27 C 1.38701 * 120.03467 * 35.12937 * 13 12 10 28 28 H 1.08998 * 109.47456 * 270.25275 * 1 2 3 29 29 H 1.09002 * 109.47208 * 30.25309 * 1 2 3 30 30 H 1.08997 * 109.46983 * 150.25279 * 1 2 3 31 31 H 1.07998 * 120.79084 * 359.97054 * 3 2 1 32 32 H 1.08004 * 120.41970 * 179.73318 * 4 3 2 33 33 H 1.07993 * 119.62323 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47186 * 329.99669 * 8 7 6 35 35 H 1.09000 * 109.46961 * 210.00223 * 8 7 6 36 36 H 0.97007 * 119.99869 * 359.97438 * 9 8 7 37 37 H 0.97000 * 119.99333 * 355.50350 * 12 10 9 38 38 H 1.08003 * 119.96613 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.92741 * 180.27129 * 15 14 13 40 40 H 1.07998 * 119.96071 * 179.71782 * 16 15 14 41 41 H 0.97000 * 120.00295 * 179.97438 * 22 21 19 42 42 H 1.08011 * 120.06903 * 359.95704 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 -0.0052 5 6 4.2256 -0.0824 -0.0048 6 7 3.5254 -1.1996 -0.0001 7 6 2.2066 -1.1916 0.0049 8 6 1.4539 -2.4972 0.0096 9 7 1.2152 -2.9184 1.3923 10 6 0.5494 -4.0631 1.6428 11 8 0.1514 -4.7489 0.7210 12 7 0.3251 -4.4478 2.9148 13 6 -0.4467 -5.5855 3.1760 14 6 -1.2727 -5.6243 4.2929 15 6 -2.0389 -6.7452 4.5484 16 6 -1.9780 -7.8351 3.7013 17 6 -1.1504 -7.8044 2.5861 18 8 -1.0908 -8.8759 1.7547 19 6 -1.9407 -9.8923 2.0042 20 1 -2.5702 -9.8670 2.8813 21 6 -2.0065 -10.9703 1.1347 22 7 -2.8354 -11.9624 1.3784 23 14 -0.9181 -11.0140 -0.3829 24 1 0.3677 -11.6786 -0.0508 25 1 -1.6027 -11.7712 -1.4614 26 1 -0.6541 -9.6269 -0.8427 27 6 -0.3839 -6.6778 2.3235 28 1 -0.3634 0.0045 1.0276 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6889 2.1422 -0.0005 32 1 4.1736 2.0591 -0.0097 33 1 5.3046 -0.1287 -0.0084 34 1 2.0414 -3.2572 -0.5055 35 1 0.4994 -2.3681 -0.5008 36 1 1.5332 -2.3714 2.1277 37 1 0.6985 -3.9359 3.6492 38 1 -1.3185 -4.7760 4.9597 39 1 -2.6834 -6.7713 5.4146 40 1 -2.5748 -8.7115 3.9063 41 1 -2.8818 -12.7164 0.7699 42 1 0.2601 -6.6515 1.4568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729556815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:07 Heat of formation + Delta-G solvation = -7.801268 kcal Electronic energy + Delta-G solvation = -26077.596860 eV Core-core repulsion = 22215.883846 eV Total energy + Delta-G solvation = -3861.713014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86343 -41.29122 -40.49823 -38.45746 -36.27939 -35.56664 -34.56598 -34.42878 -33.04130 -31.24811 -30.18926 -28.57623 -27.44891 -27.15231 -24.19162 -23.53232 -22.99604 -22.53428 -22.03319 -19.99405 -19.78723 -19.19210 -17.86514 -17.71545 -17.10049 -16.89677 -16.63762 -16.50339 -16.00401 -15.86523 -15.70998 -15.55928 -15.25527 -14.92645 -14.42936 -14.34652 -14.22552 -14.10974 -14.07344 -13.72257 -13.59646 -13.33208 -13.17558 -12.95834 -12.73743 -12.49576 -12.26180 -12.06697 -11.62538 -11.35302 -11.04705 -10.86424 -10.70785 -10.43426 -10.26690 -9.87353 -9.35168 -8.88959 -8.50524 -6.21889 -0.02365 0.29912 0.45778 0.67294 1.27542 1.31604 1.49720 1.53184 2.01282 2.27415 2.72970 2.77103 3.01880 3.11838 3.18666 3.36716 3.65138 3.89364 3.93196 4.10016 4.14241 4.37341 4.41126 4.42592 4.48123 4.58874 4.64882 4.67894 4.73774 4.76638 4.79989 4.93304 5.18671 5.22485 5.24291 5.30985 5.36136 5.38232 5.45921 5.69974 5.74906 5.81138 5.89837 5.93814 6.24793 6.84737 6.92288 6.99232 7.43587 7.62155 8.60896 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.002456 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.703974 B =11396.223652 C =12384.319764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 C -0.080 4.080 4 C -0.151 4.151 5 C 0.077 3.923 6 N -0.499 5.499 7 C 0.087 3.913 8 C 0.191 3.809 9 N -0.714 5.714 10 C 0.699 3.301 11 O -0.614 6.614 12 N -0.663 5.663 13 C 0.201 3.799 14 C -0.193 4.193 15 C -0.051 4.051 16 C -0.249 4.249 17 C 0.134 3.866 18 O -0.250 6.250 19 C -0.396 4.396 20 H 0.089 0.911 21 C 0.014 3.986 22 N -0.919 5.919 23 Si 0.962 3.038 24 H -0.264 1.264 25 H -0.262 1.262 26 H -0.276 1.276 27 C -0.204 4.204 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.412 0.588 37 H 0.428 0.572 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.114 0.886 41 H 0.285 0.715 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 33.519 2.633 35.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.118 4.118 3 C -0.106 4.106 4 C -0.171 4.171 5 C -0.081 4.081 6 N -0.208 5.208 7 C -0.050 4.050 8 C 0.066 3.934 9 N -0.370 5.370 10 C 0.400 3.600 11 O -0.493 6.493 12 N -0.313 5.313 13 C 0.106 3.894 14 C -0.214 4.214 15 C -0.069 4.069 16 C -0.269 4.269 17 C 0.084 3.916 18 O -0.158 6.158 19 C -0.472 4.472 20 H 0.107 0.893 21 C -0.185 4.185 22 N -0.560 5.560 23 Si 0.785 3.215 24 H -0.189 1.189 25 H -0.187 1.187 26 H -0.201 1.201 27 C -0.226 4.226 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.183 0.817 32 H 0.186 0.814 33 H 0.192 0.808 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.248 0.752 37 H 0.267 0.733 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.132 0.868 41 H 0.094 0.906 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.572 31.918 1.495 33.984 hybrid contribution 0.138 0.278 -0.165 0.352 sum 11.711 32.196 1.330 34.286 Atomic orbital electron populations 1.20910 0.89034 1.03886 1.03632 1.20946 0.98428 0.93253 0.99167 1.21917 0.94487 0.98611 0.95574 1.22583 0.95535 1.00239 0.98713 1.23210 1.01391 0.87591 0.95861 1.67426 1.08087 1.33562 1.11736 1.20776 0.89899 0.93971 1.00379 1.19873 0.99047 0.91949 0.82487 1.44697 1.60293 1.22984 1.09048 1.16080 0.79108 0.81699 0.83151 1.91007 1.57438 1.55931 1.44877 1.42184 1.54220 1.27834 1.07031 1.17038 0.92817 0.84453 0.95131 1.20892 0.99741 1.00992 0.99729 1.21012 0.97004 0.91015 0.97914 1.21351 1.05379 1.02143 0.98010 1.19375 0.94926 0.86984 0.90307 1.83533 1.56117 1.25061 1.51083 1.20774 1.18504 0.96828 1.11135 0.89340 1.25154 0.98110 0.94064 1.01126 1.69706 1.37236 1.09397 1.39659 0.85350 0.78996 0.78488 0.78691 1.18882 1.18688 1.20097 1.20230 1.06320 0.91881 1.04127 0.89779 0.89267 0.91757 0.81709 0.81385 0.80770 0.92292 0.89422 0.75198 0.73303 0.81598 0.82511 0.86807 0.90561 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.62 71.24 0.69 -0.50 16 2 C -0.12 -1.47 5.90 -19.78 -0.12 -1.58 16 3 C -0.08 -0.67 9.86 22.47 0.22 -0.45 16 4 C -0.15 -1.18 10.11 22.36 0.23 -0.95 16 5 C 0.08 0.98 11.18 84.69 0.95 1.93 16 6 N -0.50 -9.70 10.27 -183.89 -1.89 -11.59 16 7 C 0.09 1.56 6.15 42.54 0.26 1.83 16 8 C 0.19 4.22 5.56 85.64 0.48 4.69 16 9 N -0.71 -14.92 5.55 -482.30 -2.68 -17.60 16 10 C 0.70 20.89 8.41 179.06 1.51 22.39 16 11 O -0.61 -25.69 13.78 -3.99 -0.06 -25.74 16 12 N -0.66 -16.93 5.34 -317.24 -1.69 -18.63 16 13 C 0.20 6.89 6.30 38.13 0.24 7.13 16 14 C -0.19 -5.50 9.96 22.42 0.22 -5.27 16 15 C -0.05 -1.68 10.03 22.24 0.22 -1.46 16 16 C -0.25 -11.21 9.17 22.41 0.21 -11.01 16 17 C 0.13 6.88 6.64 22.56 0.15 7.03 16 18 O -0.25 -14.94 8.58 -22.67 -0.19 -15.13 16 19 C -0.40 -24.58 9.94 67.92 0.68 -23.91 16 20 H 0.09 5.60 5.43 -2.91 -0.02 5.59 16 21 C 0.01 0.86 5.49 84.83 0.47 1.32 16 22 N -0.92 -56.63 13.96 21.61 0.30 -56.33 16 23 Si 0.96 49.15 28.62 68.60 1.96 51.11 16 24 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.28 -14.80 7.11 99.48 0.71 -14.10 16 27 C -0.20 -9.36 8.64 22.51 0.19 -9.17 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.57 8.10 -2.39 -0.02 0.55 16 30 H 0.06 0.85 5.95 -2.39 -0.01 0.84 16 31 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 32 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 33 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.93 5.93 -2.39 -0.01 1.91 16 36 H 0.41 5.89 8.48 -92.70 -0.79 5.10 16 37 H 0.43 6.53 8.84 -92.71 -0.82 5.72 16 38 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 39 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 40 H 0.11 5.53 5.63 -2.91 -0.02 5.51 16 41 H 0.28 16.10 8.31 -92.71 -0.77 15.33 16 42 H 0.11 5.63 6.22 -2.90 -0.02 5.61 16 Total: -1.00 -84.41 359.87 1.83 -82.58 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.51 Total: 19.31 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 6.58 Total: -7.98 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -5.96 Total: -104.14 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -0.25 Total: -40.88 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 1.96 Total: 51.11 kcal Total: -84.41 1.83 -82.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729556815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.781 kcal (2) G-P(sol) polarization free energy of solvation -84.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds