Wall clock time and date at job start Tue Mar 31 2020 15:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38655 * 120.98266 * 2 1 4 4 C 1.39353 * 117.91931 * 179.97438 * 3 2 1 5 5 N 1.39442 * 120.15221 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99801 * 174.87976 * 5 4 3 7 7 O 1.21270 * 120.00085 * 4.82207 * 6 5 4 8 8 C 1.50699 * 119.99772 * 184.81833 * 6 5 4 9 9 C 1.50697 * 109.46954 * 180.02562 * 8 6 5 10 10 C 1.38298 * 119.93060 * 269.72908 * 9 8 6 11 11 C 1.38102 * 120.06543 * 179.72499 * 10 9 8 12 12 C 1.38884 * 119.93182 * 0.56905 * 11 10 9 13 13 O 1.35750 * 120.06931 * 179.68235 * 12 11 10 14 14 C 1.34826 * 116.99854 * 185.55934 * 13 12 11 15 15 H 1.08000 * 120.00355 * 354.94019 * 14 13 12 16 16 C 1.38658 * 120.00126 * 174.94415 * 14 13 12 17 17 N 1.31561 * 119.99489 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00284 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46969 * 59.99818 * 18 16 14 20 20 H 1.48500 * 109.47063 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47166 * 300.00102 * 18 16 14 22 22 C 1.38875 * 119.85949 * 359.70764 * 12 11 10 23 23 C 1.38103 * 119.93434 * 359.97438 * 22 12 11 24 24 N 1.32471 * 119.69376 * 0.25019 * 4 3 2 25 25 N 1.28340 * 122.08053 * 359.47426 * 24 4 3 26 26 C 1.31859 * 122.27349 * 0.53770 * 25 24 4 27 27 C 1.50699 * 120.00604 * 179.70778 * 26 25 24 28 28 H 1.09000 * 109.47329 * 89.99920 * 1 2 3 29 29 H 1.08999 * 109.47372 * 209.99973 * 1 2 3 30 30 H 1.08998 * 109.47223 * 330.00146 * 1 2 3 31 31 H 1.08007 * 121.04312 * 359.95852 * 3 2 1 32 32 H 0.96995 * 119.99805 * 354.60425 * 5 4 3 33 33 H 1.09002 * 109.47336 * 300.00464 * 8 6 5 34 34 H 1.08999 * 109.47291 * 60.00048 * 8 6 5 35 35 H 1.07996 * 119.96804 * 359.97438 * 10 9 8 36 36 H 1.08003 * 120.03453 * 180.26667 * 11 10 9 37 37 H 0.97005 * 119.99661 * 180.02562 * 17 16 14 38 38 H 1.08006 * 120.03379 * 179.97438 * 22 12 11 39 39 H 1.07999 * 119.96688 * 180.02562 * 23 22 12 40 40 H 1.09000 * 109.47672 * 270.03219 * 27 26 25 41 41 H 1.09001 * 109.46696 * 30.02966 * 27 26 25 42 42 H 1.09001 * 109.47221 * 150.02096 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2208 1.1887 0.0000 4 6 3.6123 1.1143 0.0006 5 7 4.3762 2.2808 0.0000 6 6 5.7179 2.2078 0.1047 7 8 6.2677 1.1269 0.1113 8 6 6.5349 3.4694 0.2136 9 6 7.9958 3.1144 0.3174 10 6 8.5711 2.9158 1.5593 11 6 9.9082 2.5848 1.6575 12 6 10.6782 2.4629 0.5080 13 8 11.9943 2.1440 0.6016 14 6 12.7095 2.1547 -0.5414 15 1 12.2155 2.3289 -1.4859 16 6 14.0791 1.9419 -0.5042 17 7 14.6808 1.7301 0.6464 18 14 15.0698 1.9560 -2.0878 19 1 14.9301 3.2791 -2.7473 20 1 16.5007 1.7061 -1.7787 21 1 14.5664 0.8945 -2.9961 22 6 10.0988 2.6686 -0.7373 23 6 8.7596 2.9930 -0.8292 24 7 4.2061 -0.0699 -0.0040 25 7 3.5396 -1.1667 0.0011 26 6 2.2212 -1.1894 0.0006 27 6 1.4901 -2.5072 0.0000 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.7141 2.1426 -0.0007 32 1 3.9422 3.1446 -0.0797 33 1 6.3729 4.0848 -0.6714 34 1 6.2313 4.0235 1.1018 35 1 7.9731 3.0158 2.4530 36 1 10.3559 2.4256 2.6273 37 1 15.6391 1.5816 0.6724 38 1 10.6950 2.5750 -1.6330 39 1 8.3084 3.1526 -1.7973 40 1 1.3147 -2.8250 -1.0277 41 1 2.0918 -3.2566 0.5144 42 1 0.5353 -2.3932 0.5132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734325191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:42 Heat of formation + Delta-G solvation = 0.465924 kcal Electronic energy + Delta-G solvation = -25830.449590 eV Core-core repulsion = 21969.095069 eV Total energy + Delta-G solvation = -3861.354521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.34875 -41.04894 -40.37891 -38.28644 -36.55580 -35.71199 -34.41474 -33.45279 -32.54859 -31.78793 -29.51445 -28.83375 -28.03855 -26.98935 -24.60028 -23.76618 -23.65052 -22.37188 -21.43517 -19.86047 -19.02655 -18.80425 -18.66347 -17.26048 -16.91623 -16.59883 -16.43978 -16.38390 -16.00817 -15.75657 -15.54561 -15.20068 -14.89550 -14.47290 -14.43313 -14.28186 -14.10547 -13.97369 -13.74518 -13.60071 -13.45580 -12.97465 -12.85531 -12.74979 -12.46800 -12.34514 -12.30595 -12.16384 -12.12864 -12.08002 -11.19534 -10.98797 -10.78067 -10.64973 -10.32031 -9.77420 -9.68872 -8.92288 -8.48107 -6.16540 -0.13071 -0.03605 0.60610 0.63729 1.32678 1.43865 1.49716 1.65785 1.79396 2.17155 2.63469 2.80575 3.09634 3.20522 3.50419 3.51133 3.70881 3.71486 3.81966 3.95255 4.04291 4.13009 4.19645 4.44969 4.47548 4.57596 4.59413 4.67579 4.68590 4.79195 4.81362 4.89313 4.90461 5.07710 5.10750 5.13246 5.21395 5.29187 5.32083 5.54835 5.56679 5.70600 5.75395 6.01760 6.20703 6.35819 6.95917 7.17550 7.77233 7.90928 8.75122 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023242 B = 0.002123 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.446632 B =13185.130743 C =13685.942630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.055 4.055 3 C -0.144 4.144 4 C 0.279 3.721 5 N -0.640 5.640 6 C 0.497 3.503 7 O -0.517 6.517 8 C -0.068 4.068 9 C -0.150 4.150 10 C -0.056 4.056 11 C -0.209 4.209 12 C 0.113 3.887 13 O -0.234 6.234 14 C -0.416 4.416 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.921 5.921 18 Si 1.021 2.979 19 H -0.254 1.254 20 H -0.269 1.269 21 H -0.260 1.260 22 C -0.246 4.246 23 C -0.058 4.058 24 N -0.299 5.299 25 N -0.270 5.270 26 C 0.024 3.976 27 C -0.098 4.098 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.198 0.802 32 H 0.442 0.558 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.273 0.727 38 H 0.117 0.883 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.366 4.777 -3.327 36.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.066 4.066 3 C -0.175 4.175 4 C 0.040 3.960 5 N -0.292 5.292 6 C 0.284 3.716 7 O -0.387 6.387 8 C -0.108 4.108 9 C -0.151 4.151 10 C -0.074 4.074 11 C -0.228 4.228 12 C 0.062 3.938 13 O -0.140 6.140 14 C -0.492 4.492 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.559 5.559 18 Si 0.840 3.160 19 H -0.178 1.178 20 H -0.194 1.194 21 H -0.185 1.185 22 C -0.265 4.265 23 C -0.076 4.076 24 N -0.146 5.146 25 N -0.110 5.110 26 C -0.125 4.125 27 C -0.156 4.156 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.215 0.785 32 H 0.284 0.716 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.158 0.842 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -34.067 3.136 -3.024 34.345 hybrid contribution 0.073 0.689 -0.434 0.818 sum -33.995 3.825 -3.458 34.384 Atomic orbital electron populations 1.21021 0.85287 1.05699 1.04862 1.21349 1.00418 0.91191 0.93681 1.22240 0.90492 1.02358 1.02418 1.20639 0.90845 0.89075 0.95426 1.43482 1.06488 1.07378 1.71812 1.21808 0.81922 0.92582 0.75280 1.90909 1.70937 1.32036 1.44825 1.20544 0.88291 0.93512 1.08405 1.19239 0.95570 1.07814 0.92465 1.20888 0.92378 0.95812 0.98327 1.20447 0.95499 1.10875 0.95966 1.19958 0.85020 0.93495 0.95283 1.83935 1.17035 1.77719 1.35343 1.21789 0.90526 1.51604 0.85238 0.88280 1.26649 0.96661 0.95816 1.03113 1.70191 1.11064 1.47155 1.27519 0.84627 0.76574 0.79920 0.74924 1.17819 1.19372 1.18489 1.21235 0.97456 1.11165 0.96640 1.20956 0.91903 0.95760 0.99008 1.73487 1.31126 0.94871 1.15141 1.72958 1.08704 1.19347 1.10008 1.23445 0.91731 0.99216 0.98116 1.20809 1.00135 0.90205 1.04419 0.88271 0.88814 0.88465 0.78455 0.71619 0.84265 0.84126 0.83523 0.87093 0.91808 0.86508 0.84243 0.88962 0.91430 0.86964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.23 9.68 71.24 0.69 0.46 16 2 C -0.06 -0.69 5.92 -19.65 -0.12 -0.80 16 3 C -0.14 -1.80 9.78 22.64 0.22 -1.58 16 4 C 0.28 6.37 7.50 132.94 1.00 7.37 16 5 N -0.64 -10.98 5.39 -308.10 -1.66 -12.64 16 6 C 0.50 12.80 7.78 87.66 0.68 13.48 16 7 O -0.52 -20.82 14.33 -3.00 -0.04 -20.87 16 8 C -0.07 -1.29 5.83 29.10 0.17 -1.12 16 9 C -0.15 -4.86 4.38 -19.84 -0.09 -4.95 16 10 C -0.06 -2.04 9.69 22.25 0.22 -1.83 16 11 C -0.21 -9.76 9.99 22.39 0.22 -9.53 16 12 C 0.11 6.11 6.65 22.58 0.15 6.26 16 13 O -0.23 -15.04 9.76 -22.70 -0.22 -15.26 16 14 C -0.42 -25.66 9.49 67.92 0.64 -25.02 16 15 H 0.10 5.64 5.20 -2.91 -0.02 5.63 16 16 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 17 N -0.92 -58.98 13.67 21.61 0.30 -58.69 16 18 Si 1.02 44.98 29.55 68.60 2.03 47.01 16 19 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 22 C -0.25 -11.69 9.17 22.39 0.21 -11.48 16 23 C -0.06 -2.17 9.69 22.25 0.22 -1.96 16 24 N -0.30 -10.25 9.09 -54.94 -0.50 -10.75 16 25 N -0.27 -8.51 11.42 -47.59 -0.54 -9.05 16 26 C 0.02 0.48 6.87 42.67 0.29 0.78 16 27 C -0.10 -1.15 9.82 71.24 0.70 -0.45 16 28 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.09 0.01 6.07 -2.39 -0.01 0.00 16 30 H 0.10 -0.14 8.11 -2.39 -0.02 -0.16 16 31 H 0.20 0.34 8.06 -2.91 -0.02 0.32 16 32 H 0.44 2.28 8.72 -92.71 -0.81 1.47 16 33 H 0.14 1.58 8.08 -2.39 -0.02 1.56 16 34 H 0.14 1.58 8.08 -2.39 -0.02 1.56 16 35 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 36 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 37 H 0.27 15.98 8.31 -92.70 -0.77 15.21 16 38 H 0.12 5.63 5.64 -2.91 -0.02 5.62 16 39 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.11 0.51 6.05 -2.39 -0.01 0.49 16 Total: -1.00 -100.59 363.19 5.30 -95.30 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.27 Total: 16.40 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 5.67 Total: -31.43 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -2.41 Total: -91.14 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.26 Total: -36.13 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -100.59 5.30 -95.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734325191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.763 kcal (2) G-P(sol) polarization free energy of solvation -100.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds