Wall clock time and date at job start Tue Mar 31 2020 14:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38817 * 119.99508 * 2 1 4 4 C 1.38558 * 118.04462 * 180.02562 * 3 2 1 5 5 C 1.39487 * 117.90318 * 0.02562 * 4 3 2 6 6 N 1.39127 * 120.15778 * 180.02562 * 5 4 3 7 7 C 1.39795 * 119.99763 * 185.82063 * 6 5 4 8 8 C 1.39031 * 119.99944 * 32.61328 * 7 6 5 9 9 C 1.38220 * 120.22316 * 179.71894 * 8 7 6 10 10 C 1.38010 * 120.23425 * 0.55445 * 9 8 7 11 11 C 1.39633 * 120.00038 * 359.71868 * 10 9 8 12 12 C 1.47743 * 120.11428 * 180.02562 * 11 10 9 13 13 O 1.21470 * 120.00094 * 179.97438 * 12 11 10 14 14 O 1.34710 * 120.00018 * 359.97438 * 12 11 10 15 15 C 1.45197 * 116.99781 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46866 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47029 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00115 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00128 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47445 * 59.99363 * 21 19 17 23 23 H 1.48494 * 109.47245 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46865 * 299.99796 * 21 19 17 25 25 C 1.38631 * 119.99642 * 212.88513 * 7 6 5 26 26 N 1.32499 * 119.68433 * 359.97438 * 5 4 3 27 27 N 1.28351 * 122.07282 * 359.97438 * 26 5 4 28 28 H 1.09001 * 109.46978 * 269.98037 * 1 2 3 29 29 H 1.09003 * 109.47239 * 29.97346 * 1 2 3 30 30 H 1.08997 * 109.47098 * 149.98269 * 1 2 3 31 31 H 1.08003 * 120.97717 * 0.04473 * 3 2 1 32 32 H 1.07992 * 121.04998 * 180.02562 * 4 3 2 33 33 H 0.97002 * 120.00165 * 5.82174 * 6 5 4 34 34 H 1.08000 * 119.89035 * 359.97211 * 8 7 6 35 35 H 1.07996 * 119.87744 * 180.27684 * 9 8 7 36 36 H 1.07996 * 120.00148 * 179.74784 * 10 9 8 37 37 H 1.08996 * 109.47590 * 299.99855 * 15 14 12 38 38 H 1.09002 * 109.47419 * 60.00306 * 15 14 12 39 39 H 1.09000 * 109.46941 * 299.99472 * 16 15 14 40 40 H 1.09000 * 109.47253 * 60.00339 * 16 15 14 41 41 H 0.96997 * 120.00003 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.11766 * 359.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2022 0.0000 4 6 3.5858 1.1551 -0.0005 5 6 4.1962 -0.0991 -0.0016 6 7 5.5837 -0.2011 -0.0017 7 6 6.1924 -1.4535 -0.1255 8 6 5.5870 -2.4487 -0.8845 9 6 6.1877 -3.6867 -1.0148 10 6 7.3868 -3.9473 -0.3832 11 6 8.0004 -2.9566 0.3861 12 6 9.2844 -3.2326 1.0628 13 8 9.8167 -2.3692 1.7311 14 8 9.8649 -4.4419 0.9388 15 6 11.1256 -4.6420 1.6307 16 6 11.6281 -6.0642 1.3739 17 6 12.9363 -6.2721 2.0925 18 1 13.3665 -5.4700 2.6739 19 6 13.5846 -7.4859 2.0070 20 7 13.0610 -8.4625 1.2986 21 14 15.2058 -7.7439 2.8983 22 1 15.0060 -7.5458 4.3565 23 1 15.6936 -9.1241 2.6490 24 1 16.2063 -6.7669 2.3986 25 6 7.3970 -1.7048 0.5131 26 7 3.4483 -1.1929 -0.0016 27 7 2.1658 -1.1416 -0.0001 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6769 2.1466 0.0007 32 1 4.1739 2.0608 -0.0002 33 1 6.1287 0.5967 0.0843 34 1 4.6462 -2.2524 -1.3772 35 1 5.7147 -4.4542 -1.6093 36 1 7.8508 -4.9172 -0.4843 37 1 11.8599 -3.9256 1.2625 38 1 10.9799 -4.4955 2.7010 39 1 10.8940 -6.7809 1.7419 40 1 11.7740 -6.2103 0.3036 41 1 13.5169 -9.3166 1.2387 42 1 7.8669 -0.9344 1.1063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736874448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:59 Heat of formation + Delta-G solvation = -0.493497 kcal Electronic energy + Delta-G solvation = -25348.601477 eV Core-core repulsion = 21487.205352 eV Total energy + Delta-G solvation = -3861.396125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.55780 -40.23144 -39.07881 -36.54102 -35.99088 -34.02472 -33.34185 -32.77393 -31.38250 -30.27981 -29.57168 -27.92009 -25.45744 -24.88401 -24.04643 -23.14605 -22.29506 -21.09924 -20.49446 -18.63645 -18.18531 -17.32352 -16.75758 -16.41848 -16.02355 -15.98203 -15.87941 -15.68105 -15.36001 -14.78313 -14.50355 -14.30825 -13.86519 -13.67956 -13.61122 -13.41911 -12.89874 -12.78151 -12.75446 -12.34014 -12.14584 -11.76965 -11.41961 -11.28267 -11.20865 -11.02620 -10.72767 -10.69764 -10.63120 -10.27117 -9.94878 -9.64444 -9.62137 -9.54388 -9.30280 -9.08739 -8.42575 -7.98410 -6.08866 -4.13289 0.39672 0.52525 0.78853 1.34032 2.41054 2.79398 3.17503 3.20307 3.31289 3.35350 3.39293 3.75440 3.79962 4.08472 4.16125 4.27892 4.40215 4.57270 4.74652 4.86936 4.92020 5.06275 5.10603 5.14065 5.18938 5.27089 5.27587 5.37024 5.50804 5.61277 5.74956 5.79352 6.02188 6.10788 6.11433 6.28112 6.34507 6.45223 6.65034 6.81724 6.95938 6.98761 7.56950 7.64050 7.87906 8.18766 8.26976 8.45195 8.91890 9.50921 11.02545 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.036964 B = 0.001786 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.307553 B =15671.631078 C =16082.156912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.019 3.981 3 C -0.078 4.078 4 C -0.166 4.166 5 C 0.326 3.674 6 N -0.650 5.650 7 C 0.140 3.860 8 C -0.089 4.089 9 C -0.110 4.110 10 C -0.075 4.075 11 C -0.097 4.097 12 C 0.502 3.498 13 O -0.517 6.517 14 O -0.350 6.350 15 C 0.076 3.924 16 C 0.025 3.975 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.090 4.090 26 N -0.285 5.285 27 N -0.204 5.204 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.421 0.579 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.264 0.736 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.231 21.230 -6.422 33.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.199 4.199 5 C 0.086 3.914 6 N -0.277 5.277 7 C 0.046 3.954 8 C -0.110 4.110 9 C -0.128 4.128 10 C -0.094 4.094 11 C -0.099 4.099 12 C 0.347 3.653 13 O -0.408 6.408 14 O -0.266 6.266 15 C 0.003 3.997 16 C -0.013 4.013 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.111 4.111 26 N -0.134 5.134 27 N -0.047 5.047 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.259 0.741 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.029 19.495 -6.278 32.341 hybrid contribution 1.387 1.895 0.704 2.451 sum -23.642 21.390 -5.574 32.365 Atomic orbital electron populations 1.20574 0.87519 1.03776 1.03359 1.22703 0.99059 0.90357 1.00825 1.22094 0.93562 0.99892 0.95156 1.21798 0.95762 0.97410 1.04929 1.20049 0.86412 0.91948 0.92991 1.41752 1.01574 1.07926 1.76483 1.17379 0.93730 0.86144 0.98168 1.21319 1.00158 0.92966 0.96509 1.21041 0.95127 0.96675 0.99990 1.21600 0.94489 0.99349 0.93988 1.18967 0.94119 0.94939 1.01830 1.21070 0.84714 0.81166 0.78381 1.90782 1.64340 1.46803 1.38827 1.86571 1.39241 1.32529 1.68240 1.23681 0.78991 1.01862 0.95132 1.19175 0.95973 0.87563 0.98550 1.20942 1.05514 0.98645 1.31485 0.92306 1.24977 0.98016 0.95791 0.95325 1.69962 1.39190 1.03739 1.39880 0.86528 0.83343 0.77247 0.80142 1.20084 1.21120 1.20085 1.20846 0.95145 0.96714 0.98361 1.73240 0.99333 1.24020 1.16849 1.72825 1.00217 1.24802 1.06810 0.90269 0.90601 0.90134 0.83164 0.83301 0.74094 0.84432 0.84696 0.83769 0.92220 0.92212 0.95262 0.95272 0.92658 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.19 36.01 0.37 -0.04 16 2 C 0.02 0.15 6.87 -82.39 -0.57 -0.42 16 3 C -0.08 -0.42 9.86 -39.25 -0.39 -0.81 16 4 C -0.17 -1.01 10.07 -39.00 -0.39 -1.40 16 5 C 0.33 3.01 7.28 -154.68 -1.13 1.88 16 6 N -0.65 -5.61 5.49 -9.89 -0.05 -5.67 16 7 C 0.14 1.59 6.30 -83.79 -0.53 1.06 16 8 C -0.09 -1.02 8.59 -39.29 -0.34 -1.35 16 9 C -0.11 -1.24 10.02 -39.67 -0.40 -1.64 16 10 C -0.08 -1.00 9.61 -39.14 -0.38 -1.38 16 11 C -0.10 -1.45 5.87 -105.01 -0.62 -2.07 16 12 C 0.50 9.37 7.90 34.62 0.27 9.65 16 13 O -0.52 -10.62 16.13 -19.24 -0.31 -10.93 16 14 O -0.35 -7.19 9.47 -40.52 -0.38 -7.57 16 15 C 0.08 1.72 5.41 37.16 0.20 1.92 16 16 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 17 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 21 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.09 -1.15 9.51 -38.95 -0.37 -1.52 16 26 N -0.28 -3.33 8.26 31.25 0.26 -3.07 16 27 N -0.20 -2.25 11.42 33.61 0.38 -1.87 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.16 8.09 -51.93 -0.42 -0.26 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.15 0.29 8.06 -52.48 -0.42 -0.14 16 32 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 33 H 0.42 2.36 8.83 -40.82 -0.36 2.00 16 34 H 0.14 1.56 6.22 -52.49 -0.33 1.23 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 1.91 7.60 -52.49 -0.40 1.51 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -34.51 369.78 -8.89 -43.40 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.25 Total: -1.42 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -4.82 Total: -9.25 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 1.32 Total: -36.30 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.69 Total: -18.51 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.51 -8.89 -43.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736874448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.904 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds