Wall clock time and date at job start Tue Mar 31 2020 14:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38817 * 119.99508 * 2 1 4 4 C 1.38558 * 118.04462 * 180.02562 * 3 2 1 5 5 C 1.39487 * 117.90318 * 0.02562 * 4 3 2 6 6 N 1.39127 * 120.15778 * 180.02562 * 5 4 3 7 7 C 1.39795 * 119.99763 * 185.82063 * 6 5 4 8 8 C 1.39031 * 119.99944 * 32.61328 * 7 6 5 9 9 C 1.38220 * 120.22316 * 179.71894 * 8 7 6 10 10 C 1.38010 * 120.23425 * 0.55445 * 9 8 7 11 11 C 1.39633 * 120.00038 * 359.71868 * 10 9 8 12 12 C 1.47743 * 120.11428 * 180.02562 * 11 10 9 13 13 O 1.21470 * 120.00094 * 179.97438 * 12 11 10 14 14 O 1.34710 * 120.00018 * 359.97438 * 12 11 10 15 15 C 1.45197 * 116.99781 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46866 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47029 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00115 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00128 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47445 * 59.99363 * 21 19 17 23 23 H 1.48494 * 109.47245 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46865 * 299.99796 * 21 19 17 25 25 C 1.38631 * 119.99642 * 212.88513 * 7 6 5 26 26 N 1.32499 * 119.68433 * 359.97438 * 5 4 3 27 27 N 1.28351 * 122.07282 * 359.97438 * 26 5 4 28 28 H 1.09001 * 109.46978 * 269.98037 * 1 2 3 29 29 H 1.09003 * 109.47239 * 29.97346 * 1 2 3 30 30 H 1.08997 * 109.47098 * 149.98269 * 1 2 3 31 31 H 1.08003 * 120.97717 * 0.04473 * 3 2 1 32 32 H 1.07992 * 121.04998 * 180.02562 * 4 3 2 33 33 H 0.97002 * 120.00165 * 5.82174 * 6 5 4 34 34 H 1.08000 * 119.89035 * 359.97211 * 8 7 6 35 35 H 1.07996 * 119.87744 * 180.27684 * 9 8 7 36 36 H 1.07996 * 120.00148 * 179.74784 * 10 9 8 37 37 H 1.08996 * 109.47590 * 299.99855 * 15 14 12 38 38 H 1.09002 * 109.47419 * 60.00306 * 15 14 12 39 39 H 1.09000 * 109.46941 * 299.99472 * 16 15 14 40 40 H 1.09000 * 109.47253 * 60.00339 * 16 15 14 41 41 H 0.96997 * 120.00003 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.11766 * 359.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2022 0.0000 4 6 3.5858 1.1551 -0.0005 5 6 4.1962 -0.0991 -0.0016 6 7 5.5837 -0.2011 -0.0017 7 6 6.1924 -1.4535 -0.1255 8 6 5.5870 -2.4487 -0.8845 9 6 6.1877 -3.6867 -1.0148 10 6 7.3868 -3.9473 -0.3832 11 6 8.0004 -2.9566 0.3861 12 6 9.2844 -3.2326 1.0628 13 8 9.8167 -2.3692 1.7311 14 8 9.8649 -4.4419 0.9388 15 6 11.1256 -4.6420 1.6307 16 6 11.6281 -6.0642 1.3739 17 6 12.9363 -6.2721 2.0925 18 1 13.3665 -5.4700 2.6739 19 6 13.5846 -7.4859 2.0070 20 7 13.0610 -8.4625 1.2986 21 14 15.2058 -7.7439 2.8983 22 1 15.0060 -7.5458 4.3565 23 1 15.6936 -9.1241 2.6490 24 1 16.2063 -6.7669 2.3986 25 6 7.3970 -1.7048 0.5131 26 7 3.4483 -1.1929 -0.0016 27 7 2.1658 -1.1416 -0.0001 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6769 2.1466 0.0007 32 1 4.1739 2.0608 -0.0002 33 1 6.1287 0.5967 0.0843 34 1 4.6462 -2.2524 -1.3772 35 1 5.7147 -4.4542 -1.6093 36 1 7.8508 -4.9172 -0.4843 37 1 11.8599 -3.9256 1.2625 38 1 10.9799 -4.4955 2.7010 39 1 10.8940 -6.7809 1.7419 40 1 11.7740 -6.2103 0.3036 41 1 13.5169 -9.3166 1.2387 42 1 7.8669 -0.9344 1.1063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736874448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:58 Heat of formation + Delta-G solvation = -20.119130 kcal Electronic energy + Delta-G solvation = -25349.452508 eV Core-core repulsion = 21487.205352 eV Total energy + Delta-G solvation = -3862.247156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18514 -41.58961 -40.17492 -37.75348 -37.21162 -35.45315 -34.55161 -33.43465 -32.64419 -32.03075 -30.45188 -28.49575 -27.30210 -25.50694 -25.40006 -23.82016 -23.19959 -22.94413 -21.86528 -19.68216 -18.86372 -18.70184 -18.06624 -17.80230 -17.55062 -17.22147 -16.76845 -16.49769 -16.36011 -16.18767 -15.71984 -15.20611 -14.90343 -14.72004 -14.48433 -14.37127 -14.21998 -14.02878 -13.70318 -13.18206 -13.11409 -13.08553 -13.04525 -12.65717 -12.59847 -12.53197 -12.26578 -12.03021 -11.86242 -11.54879 -11.50623 -11.39231 -11.11422 -10.60901 -10.52839 -10.35017 -10.10570 -8.77192 -8.26791 -6.40333 -0.39686 -0.09817 -0.07373 0.48965 1.40222 1.44724 1.45209 1.51404 1.57665 1.91720 2.40311 2.56746 2.78470 3.07407 3.21379 3.54611 3.56518 3.77888 3.78439 3.90095 4.06727 4.13957 4.16603 4.20621 4.23705 4.32831 4.40457 4.64092 4.69604 4.73249 4.80817 4.84217 5.02719 5.07860 5.15365 5.22891 5.26164 5.37372 5.38693 5.45866 5.48466 5.60616 5.72761 6.01112 6.05930 6.35931 6.64064 6.73021 7.29241 7.85434 8.85525 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.036964 B = 0.001786 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.307553 B =15671.631078 C =16082.156912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.018 3.982 3 C -0.072 4.072 4 C -0.156 4.156 5 C 0.306 3.694 6 N -0.644 5.644 7 C 0.152 3.848 8 C -0.086 4.086 9 C -0.102 4.102 10 C -0.084 4.084 11 C -0.117 4.117 12 C 0.502 3.498 13 O -0.540 6.540 14 O -0.357 6.357 15 C 0.091 3.909 16 C 0.031 3.969 17 C -0.553 4.553 18 H 0.065 0.935 19 C 0.007 3.993 20 N -0.925 5.925 21 Si 0.974 3.026 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.091 4.091 26 N -0.326 5.326 27 N -0.252 5.252 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.185 0.815 33 H 0.435 0.565 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.139 0.861 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.007 0.993 40 H 0.009 0.991 41 H 0.268 0.732 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.468 23.835 -6.417 36.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C -0.100 4.100 4 C -0.188 4.188 5 C 0.065 3.935 6 N -0.274 5.274 7 C 0.055 3.945 8 C -0.107 4.107 9 C -0.120 4.120 10 C -0.103 4.103 11 C -0.119 4.119 12 C 0.349 3.651 13 O -0.432 6.432 14 O -0.273 6.273 15 C 0.017 3.983 16 C -0.006 4.006 17 C -0.591 4.591 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.564 5.564 21 Si 0.798 3.202 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.112 4.112 26 N -0.174 5.174 27 N -0.092 5.092 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.211 0.789 32 H 0.203 0.797 33 H 0.276 0.724 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.157 0.843 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.077 0.923 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -26.301 22.124 -6.277 34.937 hybrid contribution 1.520 1.213 0.644 2.048 sum -24.781 23.337 -5.633 34.503 Atomic orbital electron populations 1.20699 0.85526 1.04807 1.04139 1.23315 1.00526 0.90473 0.98951 1.22593 0.93385 1.00754 0.93313 1.22237 0.96426 0.97305 1.02826 1.20312 0.86266 0.92989 0.93895 1.41672 1.01756 1.07359 1.76587 1.17373 0.92905 0.87284 0.96897 1.21489 1.00094 0.93046 0.96107 1.21268 0.94118 0.97308 0.99344 1.21605 0.95324 0.98891 0.94463 1.18854 0.93022 0.96589 1.03396 1.21699 0.85453 0.79957 0.77996 1.90754 1.65227 1.47101 1.40097 1.86557 1.38414 1.34095 1.68217 1.23228 0.80167 0.99555 0.95301 1.18987 0.95363 0.89361 0.96916 1.21346 1.06408 0.99309 1.32015 0.91656 1.25967 1.02002 0.95309 0.95964 1.70089 1.40962 1.04304 1.41062 0.85365 0.78371 0.77498 0.78993 1.19129 1.20412 1.19018 1.20849 0.95750 0.95966 0.98681 1.73055 1.00058 1.25809 1.18489 1.72737 1.00237 1.26972 1.09304 0.89474 0.87644 0.91055 0.78915 0.79739 0.72433 0.84040 0.82234 0.84267 0.91963 0.92149 0.97443 0.97306 0.92320 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.19 71.24 0.73 0.13 16 2 C 0.02 0.23 6.87 42.70 0.29 0.52 16 3 C -0.07 -0.52 9.86 22.48 0.22 -0.29 16 4 C -0.16 -1.39 10.07 22.65 0.23 -1.16 16 5 C 0.31 5.17 7.28 133.08 0.97 6.14 16 6 N -0.64 -10.19 5.49 -185.20 -1.02 -11.21 16 7 C 0.15 3.32 6.30 38.16 0.24 3.56 16 8 C -0.09 -1.93 8.59 22.46 0.19 -1.74 16 9 C -0.10 -2.26 10.02 22.21 0.22 -2.04 16 10 C -0.08 -2.27 9.61 22.55 0.22 -2.05 16 11 C -0.12 -3.59 5.87 -20.11 -0.12 -3.71 16 12 C 0.50 19.34 7.90 70.34 0.56 19.89 16 13 O -0.54 -22.69 16.13 19.93 0.32 -22.36 16 14 O -0.36 -15.24 9.47 -56.20 -0.53 -15.77 16 15 C 0.09 4.24 5.41 71.98 0.39 4.63 16 16 C 0.03 1.70 5.35 29.85 0.16 1.86 16 17 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 18 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 19 C 0.01 0.39 5.46 84.65 0.46 0.85 16 20 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 21 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 C -0.09 -2.34 9.51 22.68 0.22 -2.12 16 26 N -0.33 -7.47 8.26 -55.04 -0.45 -7.93 16 27 N -0.25 -5.45 11.42 -47.56 -0.54 -5.99 16 28 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.10 0.04 8.09 -2.39 -0.02 0.02 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.19 -0.33 8.06 -2.91 -0.02 -0.36 16 32 H 0.19 0.21 8.06 -2.91 -0.02 0.18 16 33 H 0.43 4.03 8.83 -92.71 -0.82 3.22 16 34 H 0.14 3.14 6.22 -2.91 -0.02 3.12 16 35 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.14 3.85 7.60 -2.91 -0.02 3.83 16 37 H 0.06 2.85 8.14 -2.39 -0.02 2.84 16 38 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.14 3.43 7.65 -2.91 -0.02 3.41 16 Total: -1.00 -77.30 369.78 5.54 -71.76 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.24 Total: 8.24 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.21 Total: -7.20 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.73 Total: -80.80 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.21 Total: -38.13 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -77.30 5.54 -71.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736874448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.643 kcal (2) G-P(sol) polarization free energy of solvation -77.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds