Wall clock time and date at job start Tue Mar 31 2020 15:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36697 * 126.60258 * 2 1 4 4 C 1.47370 * 125.77959 * 0.04330 * 3 2 1 5 5 O 1.21520 * 120.00223 * 0.09654 * 4 3 2 6 6 O 1.34751 * 119.99885 * 180.09757 * 4 3 2 7 7 C 1.45202 * 117.00184 * 185.57797 * 6 4 3 8 8 C 1.52998 * 109.47713 * 178.86646 * 7 6 4 9 9 C 1.50698 * 115.54902 * 305.69782 * 8 7 6 10 10 H 1.08003 * 120.00467 * 144.63012 * 9 8 7 11 11 C 1.37881 * 119.99709 * 324.62636 * 9 8 7 12 12 N 1.31501 * 120.00338 * 346.41733 * 11 9 8 13 13 Si 1.86806 * 119.99592 * 166.41826 * 11 9 8 14 14 H 1.48503 * 109.47223 * 60.00133 * 13 11 9 15 15 H 1.48500 * 109.46835 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47085 * 299.99950 * 13 11 9 17 17 C 1.52994 * 117.50102 * 160.02086 * 8 7 6 18 18 C 1.53001 * 117.49429 * 91.36069 * 8 7 6 19 19 N 1.34460 * 108.44343 * 180.27131 * 3 2 1 20 20 N 1.28752 * 109.56542 * 359.73538 * 19 3 2 21 21 N 1.35041 * 126.60742 * 179.82222 * 2 1 3 22 22 C 1.40228 * 126.60049 * 0.02562 * 21 2 1 23 23 C 1.38830 * 120.06175 * 144.71357 * 22 21 2 24 24 C 1.38122 * 119.93135 * 179.97438 * 23 22 21 25 25 C 1.38281 * 120.06632 * 0.02562 * 24 23 22 26 26 C 1.38281 * 120.13147 * 0.02562 * 25 24 23 27 27 C 1.38115 * 120.06578 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.46980 * 270.17967 * 1 2 3 29 29 H 1.08997 * 109.46882 * 30.17763 * 1 2 3 30 30 H 1.08997 * 109.47302 * 150.17759 * 1 2 3 31 31 H 1.09003 * 109.47457 * 298.87102 * 7 6 4 32 32 H 1.09008 * 109.46916 * 58.86716 * 7 6 4 33 33 H 0.97002 * 120.00499 * 185.09257 * 12 11 9 34 34 H 1.09000 * 117.49880 * 0.02562 * 17 8 7 35 35 H 1.09004 * 117.49626 * 145.02309 * 17 8 7 36 36 H 1.09004 * 117.49610 * 214.98004 * 18 8 7 37 37 H 1.08989 * 117.50427 * 359.97438 * 18 8 7 38 38 H 1.07993 * 120.03743 * 0.02562 * 23 22 21 39 39 H 1.08003 * 119.96881 * 179.71763 * 24 23 22 40 40 H 1.08002 * 119.93686 * 179.97438 * 25 24 23 41 41 H 1.07997 * 119.96449 * 179.97438 * 26 25 24 42 42 H 1.08001 * 120.03778 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3221 1.0974 0.0000 4 6 1.8761 2.5020 0.0009 5 8 0.6892 2.7626 0.0035 6 8 2.7844 3.4973 -0.0012 7 6 2.2780 4.8522 0.1256 8 6 3.4495 5.8362 0.1319 9 6 4.5169 5.5695 1.1617 10 1 5.5526 5.7698 0.9305 11 6 4.1710 5.0697 2.3994 12 7 2.9132 5.0752 2.7827 13 14 5.4895 4.3847 3.5316 14 1 6.4801 5.4479 3.8380 15 1 4.8629 3.9131 4.7926 16 1 6.1736 3.2483 2.8642 17 6 3.1475 7.2964 -0.2107 18 6 3.8944 6.4134 -1.2135 19 7 3.5997 0.6783 -0.0060 20 7 3.6314 -0.6088 -0.0042 21 7 2.3123 -1.0840 0.0034 22 6 1.9072 -2.4265 0.0070 23 6 2.6455 -3.3776 -0.6841 24 6 2.2443 -4.6993 -0.6783 25 6 1.1083 -5.0753 0.0146 26 6 0.3703 -4.1300 0.7031 27 6 0.7665 -2.8069 0.7009 28 1 -0.3633 0.0032 1.0276 29 1 -0.3633 0.8884 -0.5166 30 1 -0.3634 -0.8915 -0.5111 31 1 1.6210 5.0748 -0.7153 32 1 1.7199 4.9458 1.0573 33 1 2.6784 4.7927 3.6805 34 1 2.1141 7.5562 -0.4401 35 1 3.7211 8.0642 0.3086 36 1 4.9591 6.6006 -1.3534 37 1 3.3529 6.0918 -2.1029 38 1 3.5331 -3.0846 -1.2251 39 1 2.8157 -5.4389 -1.2195 40 1 0.7962 -6.1093 0.0175 41 1 -0.5167 -4.4267 1.2430 42 1 0.1900 -2.0691 1.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744278289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:16 Heat of formation + Delta-G solvation = 74.858841 kcal Electronic energy + Delta-G solvation = -27115.007564 eV Core-core repulsion = 23256.878961 eV Total energy + Delta-G solvation = -3858.128603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.47738 -39.68265 -39.18844 -36.70809 -35.19258 -34.84361 -32.69079 -32.08923 -31.38565 -30.03510 -28.27870 -26.50338 -25.30499 -24.21335 -23.76471 -22.69973 -21.22772 -21.06680 -20.10407 -19.12491 -18.42680 -16.97963 -16.63038 -16.47089 -16.22909 -15.52756 -15.41235 -15.00406 -14.68070 -14.47742 -14.23098 -14.04454 -13.72654 -13.54795 -13.20382 -13.03538 -12.96353 -12.30144 -12.07951 -11.98202 -11.84147 -11.65093 -11.53979 -11.23504 -10.87196 -10.83400 -10.77982 -10.44993 -10.28646 -10.06831 -9.54648 -9.51609 -9.40793 -9.29722 -9.05956 -8.89143 -8.69885 -8.04221 -6.00252 -4.00728 0.28974 0.81346 1.37249 1.82312 1.84239 3.16493 3.35290 3.36837 3.41656 3.49940 3.54960 4.11355 4.24053 4.38189 4.45266 4.51101 4.60369 4.74440 4.83707 4.87510 5.04551 5.09826 5.22064 5.29527 5.46872 5.50669 5.56746 5.75440 5.78725 5.85724 5.93951 6.01608 6.07363 6.19259 6.24947 6.49616 6.60497 6.64477 6.70221 6.83304 7.00103 7.30209 7.41624 7.45627 7.95362 7.96536 8.39965 8.58315 8.92753 9.58697 11.02706 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.003217 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.673136 B = 8702.136158 C = 9322.828605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.126 3.874 3 C -0.069 4.069 4 C 0.549 3.451 5 O -0.520 6.520 6 O -0.304 6.304 7 C 0.114 3.886 8 C 0.049 3.951 9 C -0.482 4.482 10 H 0.062 0.938 11 C 0.078 3.922 12 N -0.885 5.885 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.270 1.270 17 C -0.191 4.191 18 C -0.209 4.209 19 N -0.161 5.161 20 N -0.064 5.064 21 N -0.323 5.323 22 C 0.136 3.864 23 C -0.100 4.100 24 C -0.102 4.102 25 C -0.113 4.113 26 C -0.100 4.100 27 C -0.120 4.120 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.031 0.969 32 H 0.114 0.886 33 H 0.262 0.738 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.321 -20.087 -5.695 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.008 4.008 3 C -0.205 4.205 4 C 0.391 3.609 5 O -0.410 6.410 6 O -0.216 6.216 7 C 0.041 3.959 8 C 0.049 3.951 9 C -0.519 4.519 10 H 0.081 0.919 11 C -0.125 4.125 12 N -0.522 5.522 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.195 1.195 17 C -0.229 4.229 18 C -0.246 4.246 19 N -0.035 5.035 20 N -0.042 5.042 21 N -0.103 5.103 22 C 0.045 3.955 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.132 4.132 26 C -0.119 4.119 27 C -0.141 4.141 28 H 0.114 0.886 29 H 0.133 0.867 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.132 0.868 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.256 -20.377 -5.571 22.336 hybrid contribution -0.266 -0.042 0.694 0.745 sum -7.522 -20.419 -4.877 22.301 Atomic orbital electron populations 1.20885 0.84388 1.05680 1.04830 1.21904 0.96209 0.85643 0.97092 1.20309 0.88889 0.93321 1.18024 1.19261 0.84149 0.84416 0.73079 1.90749 1.17614 1.84456 1.48208 1.86643 1.37725 1.16976 1.80268 1.22912 0.96113 0.75220 1.01680 1.18841 0.94941 0.88782 0.92558 1.20369 0.92039 1.42498 0.96969 0.91941 1.24880 0.95359 0.94383 0.97861 1.69777 1.16719 1.47185 1.18498 0.86657 0.81927 0.80067 0.79498 1.20246 1.21399 1.19539 1.22970 0.98517 0.96970 1.04488 1.22960 0.99265 1.08282 0.94086 1.74857 1.18764 1.02816 1.07021 1.82179 0.94774 1.03772 1.23500 1.47592 1.07194 1.04675 1.50829 1.17560 0.97070 0.79902 1.00989 1.21087 1.00109 0.92510 0.98244 1.21120 0.96811 0.95092 0.99036 1.21356 0.94978 1.00075 0.96782 1.21061 1.00137 0.91676 0.99018 1.21221 0.96124 0.97747 0.98987 0.88637 0.86679 0.90249 0.95100 0.86830 0.92752 0.91476 0.89758 0.90269 0.91278 0.84389 0.84654 0.85057 0.84586 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 8.06 36.01 0.29 -0.84 16 2 C 0.13 1.96 6.85 -81.74 -0.56 1.40 16 3 C -0.07 -1.38 7.02 -83.56 -0.59 -1.97 16 4 C 0.55 12.29 7.95 34.45 0.27 12.56 16 5 O -0.52 -11.39 14.52 -19.28 -0.28 -11.67 16 6 O -0.30 -7.69 9.91 -40.63 -0.40 -8.10 16 7 C 0.11 2.86 4.60 37.16 0.17 3.03 16 8 C 0.05 1.26 2.10 -155.66 -0.33 0.94 16 9 C -0.48 -13.55 8.76 -34.44 -0.30 -13.85 16 10 H 0.06 1.75 7.85 -52.48 -0.41 1.34 16 11 C 0.08 2.19 5.17 -17.82 -0.09 2.10 16 12 N -0.88 -25.16 10.89 55.43 0.60 -24.56 16 13 Si 0.89 22.17 29.56 -169.99 -5.03 17.15 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 17 C -0.19 -4.36 9.96 -26.70 -0.27 -4.62 16 18 C -0.21 -4.66 9.92 -26.69 -0.26 -4.93 16 19 N -0.16 -3.38 12.39 32.84 0.41 -2.98 16 20 N -0.06 -1.16 13.57 60.35 0.82 -0.34 16 21 N -0.32 -4.83 3.75 -6.71 -0.03 -4.86 16 22 C 0.14 1.55 6.31 -83.58 -0.53 1.02 16 23 C -0.10 -0.96 9.79 -39.41 -0.39 -1.35 16 24 C -0.10 -0.70 10.04 -39.61 -0.40 -1.10 16 25 C -0.11 -0.66 10.04 -39.55 -0.40 -1.06 16 26 C -0.10 -0.64 10.04 -39.61 -0.40 -1.04 16 27 C -0.12 -1.06 8.36 -39.41 -0.33 -1.38 16 28 H 0.10 0.94 7.81 -51.93 -0.41 0.54 16 29 H 0.11 1.45 6.45 -51.93 -0.33 1.12 16 30 H 0.08 0.66 6.99 -51.93 -0.36 0.30 16 31 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 32 H 0.11 3.11 6.06 -51.92 -0.31 2.79 16 33 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.07 1.42 8.14 -51.94 -0.42 1.00 16 38 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.14 1.08 6.22 -52.49 -0.33 0.75 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -32.81 363.43 -7.62 -40.42 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.09 Total: 0.54 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -4.10 Total: -11.09 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 1.80 Total: -32.73 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.68 Total: -19.77 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.81 -7.62 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.283 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds