Wall clock time and date at job start Tue Mar 31 2020 15:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36697 * 126.60258 * 2 1 4 4 C 1.47370 * 125.77959 * 0.04330 * 3 2 1 5 5 O 1.21520 * 120.00223 * 0.09654 * 4 3 2 6 6 O 1.34751 * 119.99885 * 180.09757 * 4 3 2 7 7 C 1.45202 * 117.00184 * 185.57797 * 6 4 3 8 8 C 1.52998 * 109.47713 * 178.86646 * 7 6 4 9 9 C 1.50698 * 115.54902 * 305.69782 * 8 7 6 10 10 H 1.08003 * 120.00467 * 144.63012 * 9 8 7 11 11 C 1.37881 * 119.99709 * 324.62636 * 9 8 7 12 12 N 1.31501 * 120.00338 * 346.41733 * 11 9 8 13 13 Si 1.86806 * 119.99592 * 166.41826 * 11 9 8 14 14 H 1.48503 * 109.47223 * 60.00133 * 13 11 9 15 15 H 1.48500 * 109.46835 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47085 * 299.99950 * 13 11 9 17 17 C 1.52994 * 117.50102 * 160.02086 * 8 7 6 18 18 C 1.53001 * 117.49429 * 91.36069 * 8 7 6 19 19 N 1.34460 * 108.44343 * 180.27131 * 3 2 1 20 20 N 1.28752 * 109.56542 * 359.73538 * 19 3 2 21 21 N 1.35041 * 126.60742 * 179.82222 * 2 1 3 22 22 C 1.40228 * 126.60049 * 0.02562 * 21 2 1 23 23 C 1.38830 * 120.06175 * 144.71357 * 22 21 2 24 24 C 1.38122 * 119.93135 * 179.97438 * 23 22 21 25 25 C 1.38281 * 120.06632 * 0.02562 * 24 23 22 26 26 C 1.38281 * 120.13147 * 0.02562 * 25 24 23 27 27 C 1.38115 * 120.06578 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.46980 * 270.17967 * 1 2 3 29 29 H 1.08997 * 109.46882 * 30.17763 * 1 2 3 30 30 H 1.08997 * 109.47302 * 150.17759 * 1 2 3 31 31 H 1.09003 * 109.47457 * 298.87102 * 7 6 4 32 32 H 1.09008 * 109.46916 * 58.86716 * 7 6 4 33 33 H 0.97002 * 120.00499 * 185.09257 * 12 11 9 34 34 H 1.09000 * 117.49880 * 0.02562 * 17 8 7 35 35 H 1.09004 * 117.49626 * 145.02309 * 17 8 7 36 36 H 1.09004 * 117.49610 * 214.98004 * 18 8 7 37 37 H 1.08989 * 117.50427 * 359.97438 * 18 8 7 38 38 H 1.07993 * 120.03743 * 0.02562 * 23 22 21 39 39 H 1.08003 * 119.96881 * 179.71763 * 24 23 22 40 40 H 1.08002 * 119.93686 * 179.97438 * 25 24 23 41 41 H 1.07997 * 119.96449 * 179.97438 * 26 25 24 42 42 H 1.08001 * 120.03778 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3221 1.0974 0.0000 4 6 1.8761 2.5020 0.0009 5 8 0.6892 2.7626 0.0035 6 8 2.7844 3.4973 -0.0012 7 6 2.2780 4.8522 0.1256 8 6 3.4495 5.8362 0.1319 9 6 4.5169 5.5695 1.1617 10 1 5.5526 5.7698 0.9305 11 6 4.1710 5.0697 2.3994 12 7 2.9132 5.0752 2.7827 13 14 5.4895 4.3847 3.5316 14 1 6.4801 5.4479 3.8380 15 1 4.8629 3.9131 4.7926 16 1 6.1736 3.2483 2.8642 17 6 3.1475 7.2964 -0.2107 18 6 3.8944 6.4134 -1.2135 19 7 3.5997 0.6783 -0.0060 20 7 3.6314 -0.6088 -0.0042 21 7 2.3123 -1.0840 0.0034 22 6 1.9072 -2.4265 0.0070 23 6 2.6455 -3.3776 -0.6841 24 6 2.2443 -4.6993 -0.6783 25 6 1.1083 -5.0753 0.0146 26 6 0.3703 -4.1300 0.7031 27 6 0.7665 -2.8069 0.7009 28 1 -0.3633 0.0032 1.0276 29 1 -0.3633 0.8884 -0.5166 30 1 -0.3634 -0.8915 -0.5111 31 1 1.6210 5.0748 -0.7153 32 1 1.7199 4.9458 1.0573 33 1 2.6784 4.7927 3.6805 34 1 2.1141 7.5562 -0.4401 35 1 3.7211 8.0642 0.3086 36 1 4.9591 6.6006 -1.3534 37 1 3.3529 6.0918 -2.1029 38 1 3.5331 -3.0846 -1.2251 39 1 2.8157 -5.4389 -1.2195 40 1 0.7962 -6.1093 0.0175 41 1 -0.5167 -4.4267 1.2430 42 1 0.1900 -2.0691 1.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744278289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:15 Heat of formation + Delta-G solvation = 56.485809 kcal Electronic energy + Delta-G solvation = -27115.804278 eV Core-core repulsion = 23256.878961 eV Total energy + Delta-G solvation = -3858.925317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.75428 -41.09116 -40.23061 -38.56296 -36.91424 -36.00423 -34.19342 -33.81276 -32.03538 -30.94699 -29.50178 -28.28110 -27.37158 -25.28317 -24.91611 -23.60615 -22.98323 -22.08334 -21.54455 -21.11184 -19.62845 -18.58682 -17.95035 -17.78541 -17.43226 -17.09433 -17.01358 -16.48309 -15.89290 -15.71867 -15.47754 -15.16969 -14.97834 -14.67235 -14.38977 -14.12271 -13.93921 -13.81288 -13.78654 -13.53226 -13.19061 -12.86908 -12.82286 -12.69615 -12.52265 -12.39314 -12.37645 -12.12694 -11.88256 -11.76706 -11.42851 -11.30697 -11.09403 -10.65879 -10.54987 -10.10418 -10.04902 -9.75089 -8.11504 -6.16732 -0.64412 0.20696 0.25069 0.48940 0.74763 1.34443 1.41111 1.47276 1.70345 1.91988 2.38929 2.59691 2.93740 3.01509 3.27580 3.41193 3.50024 3.68482 3.78056 3.92978 4.14938 4.19356 4.24199 4.30776 4.38548 4.40231 4.45136 4.45514 4.56878 4.61160 4.74633 4.89711 4.92900 4.94468 5.01898 5.18748 5.20944 5.25052 5.39497 5.42089 5.45389 5.52832 5.65272 5.81167 5.86566 6.33116 6.54645 6.76097 6.88855 7.43517 8.89575 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.003217 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.673136 B = 8702.136158 C = 9322.828605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.146 3.854 3 C -0.108 4.108 4 C 0.545 3.455 5 O -0.523 6.523 6 O -0.329 6.329 7 C 0.123 3.877 8 C 0.006 3.994 9 C -0.500 4.500 10 H 0.053 0.947 11 C 0.039 3.961 12 N -0.902 5.902 13 Si 0.938 3.062 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.178 4.178 18 C -0.189 4.189 19 N -0.205 5.205 20 N -0.081 5.081 21 N -0.305 5.305 22 C 0.089 3.911 23 C -0.113 4.113 24 C -0.100 4.100 25 C -0.097 4.097 26 C -0.095 4.095 27 C -0.121 4.121 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.261 0.739 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 -23.068 -5.884 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.010 3.990 3 C -0.245 4.245 4 C 0.388 3.612 5 O -0.413 6.413 6 O -0.243 6.243 7 C 0.050 3.950 8 C 0.006 3.994 9 C -0.537 4.537 10 H 0.071 0.929 11 C -0.162 4.162 12 N -0.540 5.540 13 Si 0.764 3.236 14 H -0.188 1.188 15 H -0.208 1.208 16 H -0.209 1.209 17 C -0.215 4.215 18 C -0.226 4.226 19 N -0.078 5.078 20 N -0.059 5.059 21 N -0.084 5.084 22 C -0.001 4.001 23 C -0.133 4.133 24 C -0.119 4.119 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.142 4.142 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.143 0.857 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.187 0.813 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.058 -23.376 -5.764 25.724 hybrid contribution 0.206 0.617 0.703 0.958 sum -8.852 -22.759 -5.061 24.939 Atomic orbital electron populations 1.21082 0.81171 1.06800 1.06349 1.22403 0.97680 0.84464 0.94474 1.20261 0.89701 0.92998 1.21531 1.19621 0.83983 0.84943 0.72606 1.90713 1.17369 1.84753 1.48506 1.86633 1.39121 1.17477 1.81036 1.22666 0.95903 0.75635 1.00782 1.18986 0.95469 0.90674 0.94267 1.20617 0.92324 1.42856 0.97945 0.92917 1.25440 0.96914 0.94738 0.99085 1.69889 1.17706 1.47906 1.18537 0.85916 0.80298 0.79284 0.78106 1.18785 1.20832 1.20862 1.22962 0.99697 0.95125 1.03765 1.22983 0.99770 1.06432 0.93464 1.74803 1.20012 1.04154 1.08849 1.82031 0.96910 1.02811 1.24189 1.47768 1.05917 1.06103 1.48580 1.18062 0.99382 0.78267 1.04363 1.21188 0.99862 0.93716 0.98574 1.21458 0.97411 0.94056 0.98951 1.21855 0.93530 1.01744 0.94422 1.21499 1.00928 0.90411 0.98441 1.21444 0.95019 0.99273 0.98436 0.86595 0.87881 0.86658 0.93683 0.89505 0.92992 0.89528 0.89932 0.89950 0.89283 0.85743 0.82155 0.81462 0.81276 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 8.06 71.24 0.57 -1.45 16 2 C 0.15 4.57 6.85 41.71 0.29 4.86 16 3 C -0.11 -4.49 7.02 40.79 0.29 -4.20 16 4 C 0.55 25.44 7.95 70.23 0.56 26.00 16 5 O -0.52 -23.52 14.52 19.77 0.29 -23.23 16 6 O -0.33 -17.40 9.91 -56.62 -0.56 -17.96 16 7 C 0.12 6.36 4.60 71.98 0.33 6.70 16 8 C 0.01 0.34 2.10 -52.93 -0.11 0.23 16 9 C -0.50 -28.85 8.76 25.60 0.22 -28.62 16 10 H 0.05 3.04 7.85 -2.91 -0.02 3.01 16 11 C 0.04 2.23 5.17 84.66 0.44 2.67 16 12 N -0.90 -52.76 10.89 21.45 0.23 -52.53 16 13 Si 0.94 46.59 29.56 68.60 2.03 48.62 16 14 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 15 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 16 H -0.28 -14.50 7.11 99.48 0.71 -13.80 16 17 C -0.18 -7.96 9.96 30.62 0.30 -7.66 16 18 C -0.19 -8.33 9.92 30.62 0.30 -8.03 16 19 N -0.20 -9.12 12.39 -50.02 -0.62 -9.74 16 20 N -0.08 -3.09 13.57 37.02 0.50 -2.59 16 21 N -0.30 -9.18 3.75 -175.13 -0.66 -9.83 16 22 C 0.09 1.92 6.31 38.08 0.24 2.16 16 23 C -0.11 -2.07 9.79 22.38 0.22 -1.85 16 24 C -0.10 -1.05 10.04 22.25 0.22 -0.83 16 25 C -0.10 -0.66 10.04 22.29 0.22 -0.44 16 26 C -0.09 -0.77 10.04 22.25 0.22 -0.54 16 27 C -0.12 -1.77 8.36 22.38 0.19 -1.59 16 28 H 0.12 2.02 7.81 -2.39 -0.02 2.01 16 29 H 0.10 2.51 6.45 -2.39 -0.02 2.50 16 30 H 0.12 1.59 6.99 -2.39 -0.02 1.57 16 31 H 0.05 2.12 8.06 -2.39 -0.02 2.10 16 32 H 0.09 4.92 6.06 -2.38 -0.01 4.91 16 33 H 0.26 14.70 8.32 -92.71 -0.77 13.93 16 34 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 35 H 0.08 3.69 8.14 -2.38 -0.02 3.67 16 36 H 0.08 3.54 8.14 -2.38 -0.02 3.52 16 37 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 38 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.17 0.02 8.06 -2.91 -0.02 0.00 16 41 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 42 H 0.15 1.82 6.22 -2.91 -0.02 1.80 16 Total: -1.00 -75.48 363.43 6.78 -68.70 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.05 Total: 11.17 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.51 Total: -12.61 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -0.54 Total: -74.70 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.27 Total: -41.19 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -75.48 6.78 -68.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.190 kcal (2) G-P(sol) polarization free energy of solvation -75.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds