Wall clock time and date at job start Tue Mar 31 2020 15:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30856 * 126.19848 * 2 1 4 4 C 1.34607 * 107.29133 * 179.97438 * 3 2 1 5 5 C 1.47707 * 126.02858 * 179.97438 * 4 3 2 6 6 O 1.21476 * 120.00264 * 174.89736 * 5 4 3 7 7 O 1.34728 * 119.99938 * 354.89811 * 5 4 3 8 8 C 1.45200 * 117.00218 * 185.16081 * 7 5 4 9 9 C 1.52999 * 109.47512 * 184.45900 * 8 7 5 10 10 C 1.50703 * 115.55115 * 60.35277 * 9 8 7 11 11 H 1.07998 * 119.99851 * 267.32171 * 10 9 8 12 12 C 1.37870 * 119.99740 * 87.32732 * 10 9 8 13 13 N 1.31520 * 119.99699 * 179.19866 * 12 10 9 14 14 Si 1.86798 * 120.00417 * 359.19450 * 12 10 9 15 15 H 1.48499 * 109.47178 * 91.56104 * 14 12 10 16 16 H 1.48497 * 109.47200 * 211.56466 * 14 12 10 17 17 H 1.48503 * 109.47001 * 331.55941 * 14 12 10 18 18 C 1.53005 * 117.49385 * 274.68747 * 9 8 7 19 19 C 1.52998 * 117.50100 * 206.02736 * 9 8 7 20 20 N 1.31604 * 107.94360 * 0.25814 * 4 3 2 21 21 N 1.28859 * 108.70004 * 359.56763 * 20 4 3 22 22 C 1.40129 * 125.76609 * 180.16701 * 21 20 4 23 23 C 1.38855 * 120.07133 * 41.96019 * 22 21 20 24 24 C 1.38118 * 119.92805 * 179.69840 * 23 22 21 25 25 C 1.38282 * 120.07344 * 0.59403 * 24 23 22 26 26 C 1.38283 * 120.13281 * 359.67930 * 25 24 23 27 27 C 1.38113 * 120.06663 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47193 * 95.19226 * 1 2 3 29 29 H 1.08998 * 109.47054 * 215.18907 * 1 2 3 30 30 H 1.09002 * 109.47118 * 335.18901 * 1 2 3 31 31 H 1.09007 * 109.46923 * 304.45562 * 8 7 5 32 32 H 1.09000 * 109.47199 * 64.45654 * 8 7 5 33 33 H 0.96996 * 119.99867 * 179.97438 * 13 12 10 34 34 H 1.08993 * 117.49944 * 359.97438 * 18 9 8 35 35 H 1.08997 * 117.49564 * 145.02367 * 18 9 8 36 36 H 1.08997 * 117.50164 * 214.97818 * 19 9 8 37 37 H 1.09001 * 117.49783 * 359.97166 * 19 9 8 38 38 H 1.07994 * 120.03424 * 359.97438 * 23 22 21 39 39 H 1.08001 * 119.96154 * 180.31848 * 24 23 22 40 40 H 1.07995 * 119.93774 * 179.69714 * 25 24 23 41 41 H 1.08003 * 119.96817 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.03469 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2798 1.0560 0.0000 4 6 3.5532 0.6198 0.0006 5 6 4.7622 1.4684 0.0003 6 8 5.8613 0.9598 0.0944 7 8 4.6459 2.8065 -0.1045 8 6 5.8770 3.5687 -0.2141 9 6 5.5532 5.0640 -0.2110 10 6 4.8543 5.5752 1.0224 11 1 3.7757 5.6202 1.0523 12 6 5.5919 5.9855 2.1125 13 7 4.9826 6.4464 3.1830 14 14 7.4568 5.8867 2.0692 15 1 8.0090 7.1705 1.5672 16 1 7.9708 5.6283 3.4382 17 1 7.8732 4.7825 1.1677 18 6 5.1882 5.7104 -1.5489 19 6 6.5443 6.0029 -0.9017 20 7 3.5311 -0.6960 -0.0047 21 7 2.3038 -1.0886 0.0007 22 6 1.8701 -2.4211 0.0010 23 6 2.5083 -3.3603 0.8001 24 6 2.0744 -4.6716 0.8028 25 6 1.0135 -5.0521 0.0016 26 6 0.3795 -4.1203 -0.7996 27 6 0.8048 -2.8062 -0.8021 28 1 -0.3633 -0.0930 -1.0234 29 1 -0.3633 -0.8398 0.5922 30 1 -0.3633 0.9328 0.4312 31 1 6.5251 3.3355 0.6308 32 1 6.3838 3.3086 -1.1434 33 1 5.5015 6.7347 3.9501 34 1 5.1793 5.0705 -2.4312 35 1 4.4431 6.5058 -1.5368 36 1 6.6906 6.9904 -0.4642 37 1 7.4273 5.5553 -1.3579 38 1 3.3402 -3.0649 1.4221 39 1 2.5672 -5.4015 1.4280 40 1 0.6792 -6.0790 0.0018 41 1 -0.4491 -4.4203 -1.4239 42 1 0.3090 -2.0788 -1.4277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744278559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:37 Heat of formation + Delta-G solvation = 76.866074 kcal Electronic energy + Delta-G solvation = -26615.294618 eV Core-core repulsion = 22757.253056 eV Total energy + Delta-G solvation = -3858.041562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.80580 -39.87843 -39.51514 -37.08138 -35.44540 -34.81771 -33.49237 -32.03854 -31.51686 -30.35382 -28.40710 -27.50365 -25.64525 -24.70300 -23.61095 -22.67761 -21.68718 -21.28484 -20.29794 -19.11240 -18.65394 -17.31309 -17.06603 -16.80079 -16.63281 -15.77955 -15.74370 -15.19344 -14.89572 -14.71455 -14.35229 -14.10092 -13.87151 -13.59790 -13.39287 -13.00839 -12.91859 -12.55029 -12.46502 -12.40522 -12.14182 -11.99393 -11.64339 -11.10511 -10.93524 -10.84294 -10.57191 -10.49995 -10.42031 -10.15416 -9.96558 -9.83671 -9.59292 -9.58759 -9.05837 -8.98644 -8.53675 -8.52397 -6.05361 -4.07753 0.32088 0.74808 1.37268 1.83322 1.96316 2.85035 3.12947 3.31298 3.32151 3.41697 3.44452 3.87461 4.15005 4.29355 4.39565 4.45313 4.54452 4.66743 4.76752 4.86416 5.02839 5.10108 5.13241 5.17089 5.20423 5.39950 5.53917 5.67644 5.70293 5.70524 5.82346 5.89533 5.97842 6.00028 6.12852 6.15064 6.20797 6.31588 6.45753 6.54828 6.70837 6.85700 7.05742 7.11779 7.74024 7.81342 8.23847 8.57067 9.01740 9.56620 11.06658 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.002668 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.341702 B =10494.141499 C =10644.792259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.218 3.782 3 N -0.443 5.443 4 C 0.180 3.820 5 C 0.560 3.440 6 O -0.496 6.496 7 O -0.302 6.302 8 C 0.106 3.894 9 C -0.005 4.005 10 C -0.478 4.478 11 H 0.083 0.917 12 C 0.076 3.924 13 N -0.896 5.896 14 Si 0.875 3.125 15 H -0.276 1.276 16 H -0.292 1.292 17 H -0.260 1.260 18 C -0.172 4.172 19 C -0.190 4.190 20 N -0.247 5.247 21 N -0.257 5.257 22 C 0.125 3.875 23 C -0.094 4.094 24 C -0.103 4.103 25 C -0.108 4.108 26 C -0.103 4.103 27 C -0.110 4.110 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.520 -22.886 -8.186 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 N -0.168 5.168 4 C -0.098 4.098 5 C 0.400 3.600 6 O -0.382 6.382 7 O -0.214 6.214 8 C 0.033 3.967 9 C -0.006 4.006 10 C -0.515 4.515 11 H 0.101 0.899 12 C -0.127 4.127 13 N -0.533 5.533 14 Si 0.703 3.297 15 H -0.202 1.202 16 H -0.219 1.219 17 H -0.185 1.185 18 C -0.209 4.209 19 C -0.227 4.227 20 N -0.085 5.085 21 N -0.048 5.048 22 C 0.035 3.965 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.130 4.130 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.582 -22.819 -7.949 26.380 hybrid contribution 1.126 -0.104 0.182 1.145 sum -9.457 -22.923 -7.767 25.985 Atomic orbital electron populations 1.20458 0.82806 1.05739 1.04218 1.25204 0.97802 0.81272 1.01318 1.71551 1.00027 1.26941 1.18243 1.22485 0.91982 0.87545 1.07790 1.18805 0.84821 0.82457 0.73935 1.90847 1.26472 1.75329 1.45536 1.86696 1.38315 1.15340 1.81061 1.23197 0.82221 0.91150 1.00154 1.19303 0.99827 0.87076 0.94407 1.20233 0.94804 1.41393 0.95096 0.89884 1.24996 0.98329 0.94233 0.95100 1.69890 1.35853 1.42675 1.04910 0.86928 0.86411 0.79243 0.77124 1.20213 1.21880 1.18469 1.22852 0.97870 1.03832 0.96376 1.23006 0.92738 1.01482 1.05457 1.74455 1.01113 1.13407 1.19530 1.44528 1.03436 1.06461 1.50332 1.17555 0.98273 0.80048 1.00635 1.21185 0.99752 0.92799 0.97601 1.21146 0.96803 0.95156 0.99087 1.21387 0.95493 1.00133 0.95630 1.21060 1.00143 0.91775 0.99159 1.21116 0.96491 0.97601 0.97840 0.89017 0.89648 0.87668 0.91023 0.93156 0.92579 0.90746 0.89037 0.88699 0.90674 0.84468 0.84585 0.84957 0.84469 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 8.83 36.00 0.32 -0.27 16 2 C 0.22 3.00 7.78 -155.24 -1.21 1.79 16 3 N -0.44 -8.15 11.42 -8.49 -0.10 -8.25 16 4 C 0.18 3.57 7.98 -156.29 -1.25 2.32 16 5 C 0.56 12.45 7.96 34.60 0.28 12.72 16 6 O -0.50 -11.53 16.79 -19.25 -0.32 -11.85 16 7 O -0.30 -7.15 10.08 -40.57 -0.41 -7.56 16 8 C 0.11 2.47 5.10 37.16 0.19 2.66 16 9 C -0.01 -0.12 1.08 -155.66 -0.17 -0.29 16 10 C -0.48 -13.76 9.28 -34.44 -0.32 -14.08 16 11 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 12 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 13 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 14 Si 0.88 22.09 24.87 -169.99 -4.23 17.86 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 17 H -0.26 -6.26 5.68 56.52 0.32 -5.93 16 18 C -0.17 -3.60 9.95 -26.69 -0.27 -3.86 16 19 C -0.19 -4.06 7.56 -26.69 -0.20 -4.26 16 20 N -0.25 -4.38 11.86 32.06 0.38 -4.00 16 21 N -0.26 -3.59 3.43 -7.99 -0.03 -3.62 16 22 C 0.12 1.29 6.06 -83.61 -0.51 0.79 16 23 C -0.09 -0.88 9.78 -39.40 -0.39 -1.26 16 24 C -0.10 -0.66 10.04 -39.61 -0.40 -1.05 16 25 C -0.11 -0.53 10.04 -39.55 -0.40 -0.93 16 26 C -0.10 -0.51 10.04 -39.61 -0.40 -0.91 16 27 C -0.11 -0.78 8.54 -39.40 -0.34 -1.12 16 28 H 0.09 0.50 7.58 -51.93 -0.39 0.11 16 29 H 0.08 0.50 7.50 -51.93 -0.39 0.11 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.75 6.47 -51.92 -0.34 1.41 16 32 H 0.05 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.09 2.09 7.20 -51.93 -0.37 1.72 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.32 8.06 -52.49 -0.42 -0.10 16 41 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 42 H 0.14 0.76 6.58 -52.48 -0.35 0.41 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -36.26 362.42 -8.89 -45.15 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.28 Total: -0.55 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -5.15 Total: -5.63 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 1.03 Total: -42.88 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.73 Total: -19.41 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.23 Total: 17.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.26 -8.89 -45.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.020 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds