Wall clock time and date at job start Tue Mar 31 2020 15:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30856 * 126.19848 * 2 1 4 4 C 1.34607 * 107.29133 * 179.97438 * 3 2 1 5 5 C 1.47707 * 126.02858 * 179.97438 * 4 3 2 6 6 O 1.21476 * 120.00264 * 174.89736 * 5 4 3 7 7 O 1.34728 * 119.99938 * 354.89811 * 5 4 3 8 8 C 1.45200 * 117.00218 * 185.16081 * 7 5 4 9 9 C 1.52999 * 109.47512 * 184.45900 * 8 7 5 10 10 C 1.50703 * 115.55115 * 60.35277 * 9 8 7 11 11 H 1.07998 * 119.99851 * 267.32171 * 10 9 8 12 12 C 1.37870 * 119.99740 * 87.32732 * 10 9 8 13 13 N 1.31520 * 119.99699 * 179.19866 * 12 10 9 14 14 Si 1.86798 * 120.00417 * 359.19450 * 12 10 9 15 15 H 1.48499 * 109.47178 * 91.56104 * 14 12 10 16 16 H 1.48497 * 109.47200 * 211.56466 * 14 12 10 17 17 H 1.48503 * 109.47001 * 331.55941 * 14 12 10 18 18 C 1.53005 * 117.49385 * 274.68747 * 9 8 7 19 19 C 1.52998 * 117.50100 * 206.02736 * 9 8 7 20 20 N 1.31604 * 107.94360 * 0.25814 * 4 3 2 21 21 N 1.28859 * 108.70004 * 359.56763 * 20 4 3 22 22 C 1.40129 * 125.76609 * 180.16701 * 21 20 4 23 23 C 1.38855 * 120.07133 * 41.96019 * 22 21 20 24 24 C 1.38118 * 119.92805 * 179.69840 * 23 22 21 25 25 C 1.38282 * 120.07344 * 0.59403 * 24 23 22 26 26 C 1.38283 * 120.13281 * 359.67930 * 25 24 23 27 27 C 1.38113 * 120.06663 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47193 * 95.19226 * 1 2 3 29 29 H 1.08998 * 109.47054 * 215.18907 * 1 2 3 30 30 H 1.09002 * 109.47118 * 335.18901 * 1 2 3 31 31 H 1.09007 * 109.46923 * 304.45562 * 8 7 5 32 32 H 1.09000 * 109.47199 * 64.45654 * 8 7 5 33 33 H 0.96996 * 119.99867 * 179.97438 * 13 12 10 34 34 H 1.08993 * 117.49944 * 359.97438 * 18 9 8 35 35 H 1.08997 * 117.49564 * 145.02367 * 18 9 8 36 36 H 1.08997 * 117.50164 * 214.97818 * 19 9 8 37 37 H 1.09001 * 117.49783 * 359.97166 * 19 9 8 38 38 H 1.07994 * 120.03424 * 359.97438 * 23 22 21 39 39 H 1.08001 * 119.96154 * 180.31848 * 24 23 22 40 40 H 1.07995 * 119.93774 * 179.69714 * 25 24 23 41 41 H 1.08003 * 119.96817 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.03469 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2798 1.0560 0.0000 4 6 3.5532 0.6198 0.0006 5 6 4.7622 1.4684 0.0003 6 8 5.8613 0.9598 0.0944 7 8 4.6459 2.8065 -0.1045 8 6 5.8770 3.5687 -0.2141 9 6 5.5532 5.0640 -0.2110 10 6 4.8543 5.5752 1.0224 11 1 3.7757 5.6202 1.0523 12 6 5.5919 5.9855 2.1125 13 7 4.9826 6.4464 3.1830 14 14 7.4568 5.8867 2.0692 15 1 8.0090 7.1705 1.5672 16 1 7.9708 5.6283 3.4382 17 1 7.8732 4.7825 1.1677 18 6 5.1882 5.7104 -1.5489 19 6 6.5443 6.0029 -0.9017 20 7 3.5311 -0.6960 -0.0047 21 7 2.3038 -1.0886 0.0007 22 6 1.8701 -2.4211 0.0010 23 6 2.5083 -3.3603 0.8001 24 6 2.0744 -4.6716 0.8028 25 6 1.0135 -5.0521 0.0016 26 6 0.3795 -4.1203 -0.7996 27 6 0.8048 -2.8062 -0.8021 28 1 -0.3633 -0.0930 -1.0234 29 1 -0.3633 -0.8398 0.5922 30 1 -0.3633 0.9328 0.4312 31 1 6.5251 3.3355 0.6308 32 1 6.3838 3.3086 -1.1434 33 1 5.5015 6.7347 3.9501 34 1 5.1793 5.0705 -2.4312 35 1 4.4431 6.5058 -1.5368 36 1 6.6906 6.9904 -0.4642 37 1 7.4273 5.5553 -1.3579 38 1 3.3402 -3.0649 1.4221 39 1 2.5672 -5.4015 1.4280 40 1 0.6792 -6.0790 0.0018 41 1 -0.4491 -4.4203 -1.4239 42 1 0.3090 -2.0788 -1.4277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744278559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:36 Heat of formation + Delta-G solvation = 54.446366 kcal Electronic energy + Delta-G solvation = -26616.266810 eV Core-core repulsion = 22757.253056 eV Total energy + Delta-G solvation = -3859.013754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.98424 -41.48341 -40.24928 -38.88073 -37.22978 -35.80901 -34.51832 -34.26918 -32.06039 -31.16569 -29.53141 -29.01680 -27.61822 -26.20572 -24.31127 -23.52910 -23.32580 -22.39489 -21.60085 -21.06880 -19.71475 -18.74409 -18.59103 -18.26540 -17.66333 -17.37896 -17.24378 -16.71385 -15.85959 -15.75968 -15.43057 -15.23791 -14.89628 -14.68758 -14.61783 -14.26109 -14.24772 -14.01659 -13.92775 -13.63598 -13.18560 -13.08609 -12.82211 -12.62431 -12.37689 -12.30480 -12.14226 -12.06422 -11.90959 -11.80094 -11.76569 -11.56591 -10.97748 -10.92302 -10.68137 -10.39971 -10.09781 -9.78400 -8.31430 -6.38852 -0.52510 0.15604 0.25251 0.70099 0.84160 1.31099 1.35653 1.44685 1.48842 1.76836 2.33549 2.58332 2.73622 3.00874 3.09558 3.28140 3.49070 3.78155 3.80667 3.92446 4.14361 4.15527 4.18879 4.26095 4.32637 4.34909 4.38077 4.48694 4.52093 4.57916 4.59050 4.81427 4.92889 4.95930 4.97959 4.99807 5.10522 5.23807 5.27521 5.30850 5.42778 5.44502 5.51072 5.63834 5.86136 6.27640 6.38661 6.69138 6.75127 7.29403 8.84756 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.002668 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.341702 B =10494.141499 C =10644.792259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.227 3.773 3 N -0.486 5.486 4 C 0.144 3.856 5 C 0.560 3.440 6 O -0.516 6.516 7 O -0.321 6.321 8 C 0.108 3.892 9 C -0.043 4.043 10 C -0.480 4.480 11 H 0.030 0.970 12 C 0.018 3.982 13 N -0.948 5.948 14 Si 0.935 3.065 15 H -0.254 1.254 16 H -0.298 1.298 17 H -0.239 1.239 18 C -0.154 4.154 19 C -0.172 4.172 20 N -0.259 5.259 21 N -0.244 5.244 22 C 0.080 3.920 23 C -0.116 4.116 24 C -0.105 4.105 25 C -0.094 4.094 26 C -0.093 4.093 27 C -0.105 4.105 28 H 0.126 0.874 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.266 0.734 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.155 0.845 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 -25.825 -10.615 30.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.046 4.046 3 N -0.213 5.213 4 C -0.132 4.132 5 C 0.402 3.598 6 O -0.404 6.404 7 O -0.233 6.233 8 C 0.035 3.965 9 C -0.044 4.044 10 C -0.518 4.518 11 H 0.048 0.952 12 C -0.179 4.179 13 N -0.588 5.588 14 Si 0.759 3.241 15 H -0.178 1.178 16 H -0.225 1.225 17 H -0.162 1.162 18 C -0.191 4.191 19 C -0.209 4.209 20 N -0.100 5.100 21 N -0.034 5.034 22 C -0.008 4.008 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.112 4.112 26 C -0.111 4.111 27 C -0.124 4.124 28 H 0.144 0.856 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.173 0.827 40 H 0.185 0.815 41 H 0.192 0.808 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.479 -25.773 -10.407 30.072 hybrid contribution 1.132 0.566 0.932 1.572 sum -10.346 -25.207 -9.475 28.848 Atomic orbital electron populations 1.20819 0.78568 1.06838 1.06860 1.26153 0.99589 0.80105 0.98787 1.71464 0.99943 1.29487 1.20357 1.22104 0.91909 0.88058 1.11145 1.19122 0.85641 0.81999 0.73071 1.90799 1.27421 1.75421 1.46721 1.86694 1.38814 1.16397 1.81442 1.23110 0.82071 0.90438 1.00898 1.19201 1.02997 0.88031 0.94143 1.20333 0.92793 1.41087 0.97586 0.95154 1.25881 1.03728 0.93856 0.94464 1.70046 1.38016 1.44703 1.05986 0.85950 0.80003 0.80829 0.77320 1.17816 1.22499 1.16244 1.22910 0.97651 1.03144 0.95420 1.23093 0.93845 1.00175 1.03770 1.74342 1.03672 1.12484 1.19484 1.44808 1.02203 1.08094 1.48338 1.18059 1.00650 0.78509 1.03592 1.21201 0.99812 0.94325 0.98219 1.21417 0.97374 0.93958 0.99585 1.21867 0.93818 1.01824 0.93666 1.21540 1.00425 0.90481 0.98701 1.21399 0.95034 0.99104 0.96909 0.85634 0.86914 0.87809 0.92833 0.90016 0.92497 0.87637 0.89659 0.89363 0.87137 0.86910 0.82719 0.81477 0.80751 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 8.83 71.23 0.63 -0.38 16 2 C 0.23 6.28 7.78 138.07 1.07 7.35 16 3 N -0.49 -18.78 11.42 -180.78 -2.07 -20.85 16 4 C 0.14 6.05 7.98 137.03 1.09 7.15 16 5 C 0.56 26.23 7.96 70.32 0.56 26.79 16 6 O -0.52 -25.03 16.79 19.91 0.33 -24.70 16 7 O -0.32 -15.86 10.08 -56.38 -0.57 -16.43 16 8 C 0.11 5.05 5.10 71.98 0.37 5.41 16 9 C -0.04 -2.07 1.08 -52.93 -0.06 -2.13 16 10 C -0.48 -28.92 9.28 25.60 0.24 -28.68 16 11 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 12 C 0.02 1.09 5.47 84.65 0.46 1.55 16 13 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 14 Si 0.94 45.87 24.87 68.60 1.71 47.57 16 15 H -0.25 -11.47 7.11 99.48 0.71 -10.76 16 16 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 17 H -0.24 -10.85 5.68 99.48 0.57 -10.28 16 18 C -0.15 -6.20 9.95 30.62 0.30 -5.90 16 19 C -0.17 -6.90 7.56 30.62 0.23 -6.67 16 20 N -0.26 -9.67 11.86 -52.48 -0.62 -10.29 16 21 N -0.24 -6.93 3.43 -179.21 -0.62 -7.55 16 22 C 0.08 1.60 6.06 38.11 0.23 1.83 16 23 C -0.12 -2.15 9.78 22.39 0.22 -1.94 16 24 C -0.10 -1.10 10.04 22.25 0.22 -0.87 16 25 C -0.09 -0.51 10.04 22.29 0.22 -0.28 16 26 C -0.09 -0.49 10.04 22.25 0.22 -0.26 16 27 C -0.10 -1.15 8.54 22.39 0.19 -0.96 16 28 H 0.13 0.94 7.58 -2.39 -0.02 0.92 16 29 H 0.11 0.97 7.50 -2.39 -0.02 0.96 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 2.64 6.47 -2.38 -0.02 2.63 16 32 H 0.08 3.25 8.11 -2.39 -0.02 3.23 16 33 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 34 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 35 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.09 3.68 7.20 -2.39 -0.02 3.66 16 37 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 38 H 0.11 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 40 H 0.17 -0.19 8.06 -2.91 -0.02 -0.21 16 41 H 0.18 -0.31 8.06 -2.91 -0.02 -0.33 16 42 H 0.15 1.10 6.58 -2.91 -0.02 1.08 16 Total: -1.00 -87.21 362.42 5.59 -81.62 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.91 Total: 9.96 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 6.22 Total: 2.00 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -3.00 Total: -100.02 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.23 Total: -41.13 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.71 Total: 47.57 kcal Total: -87.21 5.59 -81.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.063 kcal (2) G-P(sol) polarization free energy of solvation -87.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds