Wall clock time and date at job start Tue Mar 31 2020 14:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35945 * 117.00147 * 2 1 4 4 C 1.38196 * 120.00698 * 0.25961 * 3 2 1 5 5 C 1.39765 * 119.85085 * 180.27559 * 4 3 2 6 6 C 1.47351 * 120.06097 * 179.74262 * 5 4 3 7 7 N 1.29874 * 119.99539 * 179.72183 * 6 5 4 8 8 N 1.40107 * 119.99746 * 179.97438 * 7 6 5 9 9 C 1.38944 * 119.99944 * 180.02562 * 8 7 6 10 10 C 1.39186 * 119.70446 * 180.02562 * 9 8 7 11 11 C 1.38296 * 119.08740 * 180.25423 * 10 9 8 12 12 C 1.50700 * 120.74734 * 179.74542 * 11 10 9 13 13 C 1.38891 * 118.51178 * 359.50494 * 11 10 9 14 14 C 1.38076 * 119.33327 * 0.51669 * 13 11 10 15 15 N 1.31929 * 120.86101 * 359.72630 * 14 13 11 16 16 C 1.39831 * 119.87385 * 359.46066 * 5 4 3 17 17 C 1.37770 * 120.01001 * 0.28694 * 16 5 4 18 18 C 1.38965 * 120.14656 * 359.96610 * 17 16 5 19 19 O 1.35705 * 119.93387 * 180.02562 * 18 17 16 20 20 C 1.34793 * 116.99697 * 354.38363 * 19 18 17 21 21 H 1.08001 * 120.00425 * 5.06801 * 20 19 18 22 22 C 1.38602 * 119.99635 * 185.06496 * 20 19 18 23 23 N 1.31585 * 120.00154 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99793 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47212 * 89.99847 * 24 22 20 26 26 H 1.48496 * 109.46755 * 209.99921 * 24 22 20 27 27 H 1.48496 * 109.47157 * 329.99970 * 24 22 20 28 28 H 1.09003 * 109.46967 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46921 * 299.99897 * 1 2 3 30 30 H 1.09001 * 109.47243 * 59.99740 * 1 2 3 31 31 H 1.07995 * 120.07178 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.99712 * 359.72197 * 6 5 4 33 33 H 0.97003 * 120.00026 * 0.02562 * 8 7 6 34 34 H 1.07992 * 120.45956 * 359.97438 * 10 9 8 35 35 H 1.09003 * 109.47171 * 89.99479 * 12 11 10 36 36 H 1.08995 * 109.47257 * 209.99562 * 12 11 10 37 37 H 1.09004 * 109.47089 * 330.00079 * 12 11 10 38 38 H 1.07997 * 120.33878 * 180.24554 * 13 11 10 39 39 H 1.08003 * 119.56976 * 179.74922 * 14 13 11 40 40 H 1.07999 * 119.99571 * 180.29933 * 16 5 4 41 41 H 1.07997 * 119.92657 * 180.02562 * 17 16 5 42 42 H 0.97007 * 120.00360 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2937 2.3704 0.0054 5 6 1.9316 3.6139 -0.0004 6 6 1.1338 4.8528 -0.0004 7 7 1.7279 6.0077 -0.0004 8 7 0.9693 7.1856 -0.0009 9 6 1.6048 8.4212 -0.0014 10 6 0.8452 9.5875 -0.0014 11 6 1.4910 10.8104 -0.0073 12 6 0.7055 12.0965 -0.0132 13 6 2.8798 10.8268 -0.0025 14 6 3.5704 9.6312 -0.0029 15 7 2.9282 8.4787 -0.0024 16 6 3.3283 3.6803 -0.0003 17 6 4.0732 2.5213 -0.0004 18 6 3.4396 1.2845 0.0001 19 8 4.1775 0.1456 0.0005 20 6 5.5134 0.2820 -0.1172 21 1 5.9572 1.2666 -0.1238 22 6 6.3174 -0.8414 -0.2296 23 7 5.7766 -2.0410 -0.2219 24 14 8.1688 -0.6524 -0.3919 25 1 8.7865 -0.6507 0.9586 26 1 8.7141 -1.7837 -1.1843 27 1 8.4774 0.6273 -1.0789 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2152 2.3154 0.0101 32 1 0.0551 4.8003 -0.0004 33 1 0.0004 7.1386 -0.0009 34 1 -0.2335 9.5382 -0.0014 35 1 0.5162 12.4114 1.0130 36 1 1.2755 12.8680 -0.5307 37 1 -0.2435 11.9402 -0.5262 38 1 3.4143 11.7653 -0.0028 39 1 4.6504 9.6395 -0.0032 40 1 3.8233 4.6401 0.0001 41 1 5.1519 2.5741 0.0001 42 1 6.3393 -2.8272 -0.3009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755900533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:55 Heat of formation + Delta-G solvation = 26.596959 kcal Electronic energy + Delta-G solvation = -25533.850513 eV Core-core repulsion = 21673.629118 eV Total energy + Delta-G solvation = -3860.221395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26076 -41.13032 -39.25744 -38.57667 -37.29359 -34.83544 -34.38014 -33.82385 -31.36053 -30.96043 -29.40107 -28.61691 -27.76214 -27.31583 -24.55053 -24.24597 -23.26744 -22.42908 -21.35461 -19.90160 -19.33499 -18.58029 -18.21547 -17.38599 -16.95261 -16.81054 -16.61741 -16.30365 -16.29832 -15.64560 -15.58717 -15.49774 -15.22732 -15.07468 -14.88057 -14.30317 -13.96081 -13.61602 -13.54256 -13.48731 -13.29066 -12.98811 -12.97854 -12.71118 -12.58221 -12.47166 -12.17648 -12.01406 -11.94225 -11.42881 -11.03282 -11.01752 -10.67320 -10.37747 -10.27020 -9.55525 -8.98489 -8.46232 -8.31681 -6.10236 -0.08717 0.35703 0.52870 0.59840 1.36337 1.42697 1.53926 1.58991 1.68124 2.18301 2.60432 2.85611 2.99991 3.16923 3.37245 3.41755 3.82311 3.86567 3.96299 4.11236 4.19635 4.32077 4.32138 4.35817 4.49704 4.51089 4.53956 4.71714 4.73812 4.78382 4.81737 4.84588 4.88803 4.97304 5.09572 5.13708 5.26213 5.42999 5.48482 5.56901 5.64278 5.75834 5.93434 5.99627 6.18429 6.65806 6.96475 6.97866 7.51762 7.77495 8.76289 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.002390 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.221572 B =11712.922306 C =13648.448634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.044 3.956 4 C -0.121 4.121 5 C -0.101 4.101 6 C 0.121 3.879 7 N -0.262 5.262 8 N -0.569 5.569 9 C 0.391 3.609 10 C -0.232 4.232 11 C -0.010 4.010 12 C -0.112 4.112 13 C -0.225 4.225 14 C 0.124 3.876 15 N -0.557 5.557 16 C -0.061 4.061 17 C -0.219 4.219 18 C 0.101 3.899 19 O -0.212 6.212 20 C -0.414 4.414 21 H 0.103 0.897 22 C -0.021 4.021 23 N -0.914 5.914 24 Si 1.019 2.981 25 H -0.262 1.262 26 H -0.270 1.270 27 H -0.254 1.254 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.172 0.828 32 H 0.150 0.850 33 H 0.407 0.593 34 H 0.155 0.845 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.158 0.842 39 H 0.168 0.832 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.220 25.283 0.225 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C -0.001 4.001 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.089 4.089 7 N -0.068 5.068 8 N -0.295 5.295 9 C 0.158 3.842 10 C -0.257 4.257 11 C -0.018 4.018 12 C -0.168 4.168 13 C -0.247 4.247 14 C -0.033 4.033 15 N -0.273 5.273 16 C -0.082 4.082 17 C -0.239 4.239 18 C 0.049 3.951 19 O -0.118 6.118 20 C -0.490 4.490 21 H 0.120 0.880 22 C -0.220 4.220 23 N -0.551 5.551 24 Si 0.838 3.162 25 H -0.187 1.187 26 H -0.195 1.195 27 H -0.177 1.177 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.189 0.811 32 H 0.167 0.833 33 H 0.249 0.751 34 H 0.173 0.827 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.176 0.824 39 H 0.185 0.815 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.803 24.374 0.227 27.533 hybrid contribution -0.718 -0.095 -0.031 0.725 sum -13.522 24.280 0.195 27.792 Atomic orbital electron populations 1.23316 0.76904 1.05008 1.02400 1.86205 1.23164 1.26556 1.89841 1.18264 0.88719 0.85971 1.07163 1.21069 1.00479 0.88826 1.03761 1.17878 0.91934 0.90714 1.09900 1.24181 0.98471 0.89095 0.97131 1.74856 1.25176 0.93339 1.13414 1.45199 1.06553 0.99894 1.77826 1.18324 0.89177 0.84189 0.92551 1.21406 1.01569 0.90430 1.12288 1.20462 0.94161 0.95687 0.91530 1.20885 0.99854 0.92217 1.03868 1.22137 0.94623 1.00064 1.07871 1.22911 1.01026 0.86774 0.92570 1.67243 1.08976 1.31523 1.19598 1.21047 0.93589 0.96930 0.96630 1.20950 1.00733 0.91035 1.11178 1.19503 0.89918 0.87687 0.98017 1.83999 1.19971 1.27590 1.80215 1.21887 0.79083 0.95695 1.52344 0.87973 1.26604 1.05980 0.93578 0.95792 1.70224 1.38316 0.98655 1.47924 0.84591 0.73439 0.79007 0.79197 1.18721 1.19458 1.17715 0.87500 0.91158 0.91237 0.81110 0.83280 0.75096 0.82701 0.89369 0.89677 0.90054 0.82399 0.81496 0.85324 0.85520 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.59 16 2 O -0.34 -14.75 10.28 -78.96 -0.81 -15.56 16 3 C 0.04 1.91 6.70 22.57 0.15 2.07 16 4 C -0.12 -3.92 8.77 22.63 0.20 -3.72 16 5 C -0.10 -3.35 5.87 -20.12 -0.12 -3.46 16 6 C 0.12 3.14 10.74 87.38 0.94 4.08 16 7 N -0.26 -7.82 10.18 -52.21 -0.53 -8.35 16 8 N -0.57 -13.55 6.42 -55.40 -0.36 -13.90 16 9 C 0.39 9.80 7.59 133.08 1.01 10.81 16 10 C -0.23 -4.03 9.64 22.51 0.22 -3.82 16 11 C -0.01 -0.15 5.91 -19.69 -0.12 -0.27 16 12 C -0.11 -0.78 10.06 71.24 0.72 -0.07 16 13 C -0.23 -3.59 9.81 22.39 0.22 -3.37 16 14 C 0.12 2.72 11.17 84.64 0.95 3.67 16 15 N -0.56 -16.25 9.91 -193.21 -1.91 -18.16 16 16 C -0.06 -2.40 9.57 22.54 0.22 -2.19 16 17 C -0.22 -10.13 9.14 22.33 0.20 -9.92 16 18 C 0.10 5.24 6.67 22.76 0.15 5.39 16 19 O -0.21 -13.22 9.53 -7.89 -0.08 -13.29 16 20 C -0.41 -24.75 9.48 67.91 0.64 -24.10 16 21 H 0.10 5.62 5.19 -2.91 -0.02 5.60 16 22 C -0.02 -1.24 5.49 84.82 0.47 -0.77 16 23 N -0.91 -57.20 13.67 21.61 0.30 -56.90 16 24 Si 1.02 43.92 29.55 68.60 2.03 45.95 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 28 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.07 1.50 7.65 -2.39 -0.02 1.48 16 30 H 0.07 1.50 7.67 -2.39 -0.02 1.48 16 31 H 0.17 3.83 6.28 -2.91 -0.02 3.81 16 32 H 0.15 2.47 8.02 -2.91 -0.02 2.45 16 33 H 0.41 6.45 8.65 -213.31 -1.84 4.60 16 34 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.41 8.10 -2.39 -0.02 0.39 16 37 H 0.08 0.42 8.10 -2.38 -0.02 0.40 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 40 H 0.13 4.90 7.54 -2.91 -0.02 4.88 16 41 H 0.13 5.93 5.62 -2.91 -0.02 5.91 16 42 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -84.28 368.89 4.82 -79.46 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.77 Total: 24.86 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 6.96 Total: -24.10 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -2.51 Total: -97.32 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.89 Total: -28.85 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -84.28 4.82 -79.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755900533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.058 kcal (2) G-P(sol) polarization free energy of solvation -84.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds