Wall clock time and date at job start Tue Mar 31 2020 16:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47174 * 2 1 4 4 C 1.38541 * 120.01543 * 125.28095 * 3 2 1 5 5 C 1.40090 * 117.81735 * 180.21814 * 4 3 2 6 6 C 1.48098 * 121.14768 * 179.78712 * 5 4 3 7 7 O 1.21530 * 119.99480 * 182.74505 * 6 5 4 8 8 N 1.34774 * 119.99865 * 2.74227 * 6 5 4 9 9 C 1.39842 * 119.99457 * 174.19577 * 8 6 5 10 10 C 1.38987 * 120.03343 * 147.79202 * 9 8 6 11 11 C 1.38152 * 120.05985 * 179.97438 * 10 9 8 12 12 C 1.38173 * 120.14487 * 359.72300 * 11 10 9 13 13 C 1.38912 * 120.07188 * 0.55185 * 12 11 10 14 14 O 1.35753 * 120.03351 * 179.71956 * 13 12 11 15 15 C 1.34835 * 116.99623 * 353.90063 * 14 13 12 16 16 H 1.08000 * 119.99942 * 5.08438 * 15 14 13 17 17 C 1.38647 * 119.99560 * 185.08363 * 15 14 13 18 18 N 1.31555 * 120.00421 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99900 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46926 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47444 * 119.99774 * 19 17 15 22 22 H 1.48504 * 109.47089 * 240.00162 * 19 17 15 23 23 C 1.38738 * 120.04184 * 327.76598 * 9 8 6 24 24 C 1.39788 * 117.70230 * 359.51708 * 5 4 3 25 25 C 1.50697 * 120.17342 * 180.27051 * 24 5 4 26 26 N 1.31893 * 119.65113 * 0.24780 * 24 5 4 27 27 N 1.28277 * 122.33480 * 359.97438 * 26 24 5 28 28 H 1.08997 * 109.46947 * 299.99582 * 1 2 3 29 29 H 1.08994 * 109.47185 * 59.99989 * 1 2 3 30 30 H 1.09004 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.46959 * 240.00141 * 2 1 3 32 32 H 1.08995 * 109.47664 * 120.00241 * 2 1 3 33 33 H 1.07999 * 121.08841 * 359.97438 * 4 3 2 34 34 H 0.96995 * 120.00460 * 354.20433 * 8 6 5 35 35 H 1.07994 * 119.96829 * 359.97438 * 10 9 8 36 36 H 1.08003 * 119.92620 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.96261 * 180.27480 * 12 11 10 38 38 H 0.97004 * 120.00335 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.06449 * 0.04680 * 23 9 8 40 40 H 1.09000 * 109.47117 * 82.45207 * 25 24 5 41 41 H 1.08996 * 109.47192 * 202.44847 * 25 24 5 42 42 H 1.09001 * 109.47206 * 322.45182 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9166 1.8432 0.9793 5 6 3.3503 3.1746 0.9381 6 6 4.2915 3.7053 1.9510 7 8 4.6153 4.8764 1.9249 8 7 4.7889 2.8896 2.9015 9 6 5.7686 3.3583 3.7824 10 6 5.8207 2.8767 5.0851 11 6 6.7887 3.3391 5.9556 12 6 7.7113 4.2768 5.5329 13 6 7.6611 4.7662 4.2339 14 8 8.5644 5.6917 3.8211 15 6 9.4029 6.1870 4.7536 16 1 9.3924 5.7865 5.7566 17 6 10.2786 7.2104 4.4249 18 7 10.2917 7.6980 3.2031 19 14 11.4398 7.8972 5.7170 20 1 11.2285 7.1833 7.0019 21 1 12.8437 7.7093 5.2709 22 1 11.1699 9.3452 5.9055 23 6 6.6901 4.3041 3.3568 24 6 2.8686 3.9834 -0.0953 25 6 3.3037 5.4227 -0.1962 26 7 2.0317 3.4801 -0.9817 27 7 1.6350 2.2610 -0.9358 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.2572 1.1693 1.7514 34 1 4.4674 1.9774 2.9746 35 1 5.1038 2.1405 5.4172 36 1 6.8269 2.9637 6.9676 37 1 8.4695 4.6329 6.2146 38 1 10.9041 8.4143 2.9732 39 1 6.6515 4.6801 2.3451 40 1 4.2714 5.4756 -0.6951 41 1 2.5677 5.9853 -0.7705 42 1 3.3867 5.8482 0.8039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758950382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:10 Heat of formation + Delta-G solvation = 24.019117 kcal Electronic energy + Delta-G solvation = -26429.605668 eV Core-core repulsion = 22569.272489 eV Total energy + Delta-G solvation = -3860.333178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69940 -40.14655 -38.70140 -36.74636 -35.56509 -34.47477 -33.73041 -32.31008 -31.81840 -29.64828 -28.76723 -27.87241 -26.14258 -25.33463 -23.80337 -23.25446 -22.21266 -21.43490 -20.43671 -18.61439 -17.88232 -17.67481 -17.03272 -16.00129 -15.94028 -15.67154 -15.33613 -15.17329 -14.95334 -14.46197 -14.41952 -14.21395 -13.90609 -13.62849 -13.51894 -13.14037 -12.90891 -12.64105 -12.52738 -12.31171 -12.17981 -11.84393 -11.66748 -11.61838 -11.27574 -11.09425 -11.08788 -10.86845 -10.53775 -10.47199 -10.40178 -9.95378 -9.76762 -9.60895 -9.27263 -8.87421 -7.81893 -7.28275 -6.47104 -4.06550 0.01022 0.54186 1.89793 2.24500 2.69330 2.81271 3.10861 3.12731 3.18155 3.32297 3.59197 3.86931 3.94637 4.05292 4.25259 4.37400 4.51724 4.66081 4.73806 4.84315 5.06523 5.12895 5.17074 5.24176 5.36337 5.46011 5.51914 5.61854 5.66655 5.68044 5.70818 5.85781 5.93884 5.96877 6.07249 6.25711 6.28111 6.53429 6.71561 6.90954 6.98770 7.27061 7.37654 7.44705 7.65517 7.96971 8.03380 8.39503 8.97730 9.67063 10.70562 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.002586 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.981359 B =10824.984184 C =11902.105443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C 0.056 3.944 4 C -0.081 4.081 5 C -0.126 4.126 6 C 0.554 3.446 7 O -0.483 6.483 8 N -0.658 5.658 9 C 0.174 3.826 10 C -0.235 4.235 11 C -0.056 4.056 12 C -0.243 4.243 13 C 0.168 3.832 14 O -0.172 6.172 15 C -0.392 4.392 16 H 0.094 0.906 17 C 0.039 3.961 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.187 4.187 24 C 0.123 3.877 25 C -0.114 4.114 26 N -0.241 5.241 27 N -0.220 5.220 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.153 0.847 34 H 0.404 0.596 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.270 0.730 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.273 -14.890 -2.085 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.088 4.088 4 C -0.111 4.111 5 C -0.140 4.140 6 C 0.340 3.660 7 O -0.356 6.356 8 N -0.303 5.303 9 C 0.081 3.919 10 C -0.256 4.256 11 C -0.075 4.075 12 C -0.262 4.262 13 C 0.113 3.887 14 O -0.075 6.075 15 C -0.468 4.468 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.208 4.208 24 C -0.021 4.021 25 C -0.172 4.172 26 N -0.083 5.083 27 N -0.063 5.063 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.171 0.829 34 H 0.240 0.760 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.148 0.852 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.781 -13.476 -3.869 21.109 hybrid contribution 1.309 -0.510 2.047 2.483 sum -14.472 -13.986 -1.822 20.208 Atomic orbital electron populations 1.21716 0.93599 1.02240 1.02948 1.20460 0.97415 0.88839 1.03904 1.22835 0.94835 0.98806 0.92330 1.22544 0.94901 0.94955 0.98663 1.21094 1.00033 0.94901 0.98006 1.17928 0.80833 0.86127 0.81093 1.90848 1.57367 1.15296 1.72112 1.43203 1.39676 1.15381 1.32052 1.17111 0.88655 0.97358 0.88785 1.20234 1.04598 1.08431 0.92311 1.20513 0.93670 0.95408 0.97935 1.21209 1.03968 1.03656 0.97398 1.19084 0.88591 0.89370 0.91653 1.83989 1.39409 1.47355 1.36703 1.21399 1.15053 1.17960 0.92428 0.88870 1.25317 0.97949 0.95754 0.97522 1.70056 1.35978 1.25232 1.18030 0.85633 0.79260 0.78975 0.79461 1.19061 1.20130 1.20095 1.20013 0.96108 1.03551 1.01126 1.23212 0.90953 0.98888 0.89007 1.21111 1.02079 0.87677 1.06322 1.73114 1.09136 1.05276 1.20783 1.72749 1.17080 0.97573 1.18856 0.92733 0.91326 0.91794 0.89238 0.89774 0.82916 0.75968 0.87304 0.86887 0.85318 0.91982 0.85151 0.89108 0.90435 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.78 37.16 0.36 -0.53 16 2 C -0.07 -0.41 6.35 -27.88 -0.18 -0.58 16 3 C 0.06 0.54 6.25 -82.45 -0.52 0.02 16 4 C -0.08 -0.73 9.30 -38.78 -0.36 -1.09 16 5 C -0.13 -1.54 5.92 -104.58 -0.62 -2.16 16 6 C 0.55 8.12 7.51 -12.22 -0.09 8.03 16 7 O -0.48 -8.88 11.06 5.34 0.06 -8.82 16 8 N -0.66 -8.76 5.30 -10.66 -0.06 -8.82 16 9 C 0.17 3.02 6.29 -83.74 -0.53 2.50 16 10 C -0.23 -3.73 9.96 -39.34 -0.39 -4.13 16 11 C -0.06 -0.97 10.03 -39.64 -0.40 -1.37 16 12 C -0.24 -5.12 9.16 -39.36 -0.36 -5.48 16 13 C 0.17 4.07 6.64 -39.14 -0.26 3.81 16 14 O -0.17 -4.93 9.76 0.02 0.00 -4.93 16 15 C -0.39 -10.89 9.49 30.88 0.29 -10.60 16 16 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 19 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 C -0.19 -4.06 8.60 -39.20 -0.34 -4.40 16 24 C 0.12 1.65 6.91 -81.99 -0.57 1.08 16 25 C -0.11 -1.46 9.07 36.00 0.33 -1.14 16 26 N -0.24 -3.33 11.42 33.82 0.39 -2.94 16 27 N -0.22 -2.74 11.04 33.58 0.37 -2.37 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.51 7.96 -51.93 -0.41 0.09 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.08 0.31 7.92 -51.93 -0.41 -0.10 16 33 H 0.15 0.79 6.56 -52.49 -0.34 0.44 16 34 H 0.40 3.60 7.01 -40.82 -0.29 3.32 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 3.01 6.34 -52.49 -0.33 2.68 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.11 1.60 5.76 -51.93 -0.30 1.30 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -33.78 357.41 -6.59 -40.37 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.75 Total: 6.32 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -3.72 Total: -15.06 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 1.46 Total: -38.62 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.06 Total: -13.75 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.78 -6.59 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758950382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.391 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds